source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr1	1074354	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	4	A3,C3,C32,C68
lof_cds	Chr1	1074409	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	48	A16,A8,B100,B11,B117,B121,B130,B136,B139,B140,B17,B2,B23,B31,B36,B38,B50,B54,B55,B59,B63,B69,B72,B76,B79,B89,B9,B90,B97,C20,C21,C26,C3,C34,C35,C36,C47,C48,C50,C57,C59,C61,C69,C73,C77,C8,D5,D8
typical_cds_rare	Chr1	1074416	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	D11
lof_cds	Chr1	1074435	TAC	T	INDEL	2bp_deletion	frameshift_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	179	A15,A16,A18,A19,A2,A21,A22,A23,A24,A25,A3,A4,A5,A6,A8,A9,B100,B101,B105,B106,B108,B109,B11,B110,B111,B114,B117,B118,B12,B121,B123,B126,B127,B129,B130,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B17,B18,B19,B2,B21,B22,B23,B26,B28,B31,B33,B34,B35,B36,B37,B38,B4,B40,B41,B44,B45,B46,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B58,B59,B6,B60,B62,B63,B64,B66,B67,B68,B69,B7,B70,B72,B74,B75,B76,B78,B79,B8,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B93,B94,B96,B97,B98,B99,C1,C10,C14,C15,C16,C17,C18,C20,C21,C23,C24,C26,C27,C28,C29,C3,C30,C31,C33,C34,C35,C36,C37,C38,C39,C42,C43,C44,C47,C48,C5,C50,C51,C52,C53,C54,C57,C58,C59,C6,C60,C61,C62,C65,C66,C69,C71,C72,C73,C77,C78,C8,C80,C82,C9,D1,D10,D11,D2,D3,D5,D6,D8,D9
lof_cds	Chr1	1074449	C	CAA	INDEL	2bp_insertion	frameshift_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	6	A3,B100,B87,B99,D10,D9
lof_cds	Chr1	1074462	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	36	A15,A25,A3,A4,A5,A7,B100,B114,B123,B126,B127,B133,B15,B33,B49,B51,B52,B53,B67,B69,B70,B86,B87,B9,B90,B99,C1,C16,C24,C28,C44,C51,C65,C80,D10,D9
typical_cds_rare	Chr1	1074467	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	3	B133,B2,C52
typical_cds_rare	Chr1	1074471	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	3	B113,B68,B83
typical_cds_rare	Chr1	1074527	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B54,C64
lof_cds	Chr1	1074539	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	D4
typical_cds_rare	Chr1	1074539	ATT	A	INDEL	2bp_deletion	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	D4
lof_cds	Chr1	1074584	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	5	B118,B133,B80,C65,C77
typical_cds_rare	Chr1	1074584	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	5	B118,B133,B80,C65,C77
typical_cds_rare	Chr1	1074598	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B44,C24
typical_cds_rare	Chr1	1074604	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B32,C48
typical_cds_rare	Chr1	1074612	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B44,C24
typical_cds_rare	Chr1	1074620	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	3	B123,B66,D11
typical_cds_rare	Chr1	1074621	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	B75
typical_cds_rare	Chr1	1074705	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	A20,D11
typical_cds_rare	Chr1	1074710	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	D10
lof_cds	Chr1	1074721	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	11	B130,B2,B21,B26,B30,B51,B58,C15,C57,C59,D11
lof_cds	Chr1	1074727	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	5	A18,B131,C1,C2,C81
typical_cds_rare	Chr1	1074727	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	5	A18,B131,C1,C2,C81
typical_cds_rare	Chr1	1074795	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	5	B130,B26,B58,C59,D11
typical_cds_rare	Chr1	1074808	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	5	B130,B26,B58,C59,D11
typical_cds_rare	Chr1	1074824	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	3	B44,C24,C3
lof_cds	Chr1	1074842	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	B75
typical_cds_rare	Chr1	1074842	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	B75
typical_cds_rare	Chr1	1074903	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	B75
typical_cds_rare	Chr1	1074907	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	D7
lof_cds	Chr1	1074919	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B130,B21
typical_cds_rare	Chr1	1074919	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B130,B21
typical_cds_rare	Chr1	1074931	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	B104
typical_cds_rare	Chr1	1074938	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	C17
typical_cds_rare	Chr1	1074967	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	D11
typical_cds_rare	Chr1	1075034	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B26,B81
typical_cds_rare	Chr1	1075035	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	B44
lof_cds	Chr1	1075066	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B32,C48
typical_cds_rare	Chr1	1075066	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B32,C48
lof_cds	Chr1	1075076	TAC	T	INDEL	2bp_deletion	frameshift_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B130,B58
typical_cds_rare	Chr1	1075076	TAC	T	INDEL	2bp_deletion	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B130,B58
lof_cds	Chr1	1075079	T	TTA	INDEL	2bp_insertion	frameshift_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B130,B58
typical_cds_rare	Chr1	1075079	T	TTA	INDEL	2bp_insertion	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B130,B58
lof_cds	Chr1	1075107	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	D6
typical_cds_rare	Chr1	1075107	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	D6
typical_cds_rare	Chr1	1075141	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B138,B31
typical_cds_rare	Chr1	1075143	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	5	A3,A7,B130,B58,C59
typical_cds_rare	Chr1	1075151	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	3	B51,B93,C65
typical_cds_rare	Chr1	1075171	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	B104
lof_cds	Chr1	1075202	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	8	A1,B107,B108,B3,B99,C12,C41,C56
typical_cds_rare	Chr1	1075302	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	3	B51,B93,C65
typical_cds_rare	Chr1	1075310	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	3	C6,C8,C85
typical_cds_rare	Chr1	1075420	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	3	A24,B26,C39
typical_cds_rare	Chr1	1075493	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	3	A3,C59,D7
typical_cds_rare	Chr1	1075506	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	5	A3,B26,B81,C59,D7
typical_cds_rare	Chr1	1075530	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B51,C65
lof_cds	Chr1	1075532	CAT	C	INDEL	2bp_deletion	frameshift_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	4	A3,B51,C24,C59
typical_cds_rare	Chr1	1075532	CAT	C	INDEL	2bp_deletion	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	4	A3,B51,C24,C59
typical_cds_rare	Chr1	1075537	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	4	B14,B32,C34,C57
typical_cds_rare	Chr1	1075543	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B51,C65
typical_cds_rare	Chr1	1075550	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B51,C65
typical_cds_rare	Chr1	1075563	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	3	A3,C24,C59
typical_cds_rare	Chr1	1075576	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B32,C57
typical_cds_rare	Chr1	1075580	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	3	A3,C24,C59
lof_cds	Chr1	1075585	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	3	A3,C24,C59
typical_cds_rare	Chr1	1075585	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	3	A3,C24,C59
lof_cds	Chr1	1075591	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	8	A1,B107,B108,B3,B99,C12,C41,C56
typical_cds_rare	Chr1	1075610	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	4	C3,C42,C70,C84
typical_cds_rare	Chr1	1075624	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	4	B91,B95,B98,C50
lof_cds	Chr1	1075657	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B138,B31
typical_cds_rare	Chr1	1075657	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B138,B31
typical_cds_rare	Chr1	1075662	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	4	A3,B115,B51,C48
lof_cds	Chr1	1075678	GCC	G	INDEL	2bp_deletion	frameshift_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	B36
typical_cds_rare	Chr1	1075678	GCC	G	INDEL	2bp_deletion	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	B36
typical_cds_rare	Chr1	1075726	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	B104
typical_cds_rare	Chr1	1075768	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B26,B81
typical_cds_rare	Chr1	1075781	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	3	B51,B93,C65
lof_cds	Chr1	1075841	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	D10,D11
typical_cds_rare	Chr1	1075841	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	D10,D11
typical_cds_rare	Chr1	1075846	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	C17
typical_cds_rare	Chr1	1075873	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	3	B28,B32,C48
typical_cds_rare	Chr1	1075909	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B123,D11
typical_cds_rare	Chr1	1075916	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B32,C48
lof_cds	Chr1	1075950	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	B21
typical_cds_rare	Chr1	1075950	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	B21
typical_cds_rare	Chr1	1075959	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	B138
typical_cds_rare	Chr1	1076063	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B138,B31
typical_cds_rare	Chr1	1076088	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	D11
lof_cds	Chr1	1076143	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B32,C48
typical_cds_rare	Chr1	1076143	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B32,C48
lof_cds	Chr1	1076198	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	51	A10,A11,A2,A4,B1,B108,B134,B135,B14,B19,B20,B29,B32,B33,B39,B40,B41,B42,B43,B44,B49,B51,B52,B54,B62,B68,B79,B87,B9,B98,C15,C19,C2,C20,C22,C26,C32,C36,C45,C53,C55,C61,C62,C68,C71,C74,C8,C80,C85,D2,D3
lof_cds	Chr1	1076225	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	7	B83,B85,C37,C51,C67,C8,D9
typical_cds_rare	Chr1	1076231	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B64,D10
typical_cds_rare	Chr1	1076308	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	B124,C87
typical_cds_rare	Chr1	1076311	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	B104
typical_cds_rare	Chr1	1076351	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	D10
typical_cds_rare	Chr1	1076355	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	1	D10
typical_cds_rare	Chr1	1076390	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	4	B125,B95,C43,C61
typical_cds_rare	Chr1	1076522	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007211	SmilChr01G000066	131007211	rna-XM_057934366.1	2	C39,D4