source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr1	1111494	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	D1
typical_cds_rare	Chr1	1111497	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	2	A24,D1
typical_cds_rare	Chr1	1111499	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	D11
lof_cds	Chr1	1111507	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	56	A1,A14,A20,A21,A24,A8,B106,B120,B126,B127,B128,B129,B133,B136,B15,B22,B23,B29,B3,B50,B51,B63,B65,B66,B68,B74,B79,B8,B80,B85,B86,B88,B95,C1,C12,C14,C19,C2,C26,C28,C31,C37,C42,C43,C44,C45,C62,C65,C76,C8,C82,C87,C9,D11,D6,D7
lof_cds	Chr1	1111508	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	57	A1,A14,A20,A21,A24,A8,B106,B120,B126,B127,B128,B129,B133,B136,B15,B22,B23,B29,B3,B50,B51,B63,B65,B66,B68,B74,B79,B8,B85,B86,B88,B95,C1,C12,C14,C16,C19,C2,C26,C28,C3,C31,C37,C42,C43,C44,C45,C62,C65,C76,C8,C82,C87,C9,D11,D6,D7
typical_cds_rare	Chr1	1111537	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	2	B65,D1
typical_cds_rare	Chr1	1111578	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	3	A16,B41,B74
typical_cds_rare	Chr1	1111580	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	D1
typical_cds_rare	Chr1	1111593	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	2	B32,B36
typical_cds_rare	Chr1	1111616	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	4	B134,B138,B31,B33
typical_cds_rare	Chr1	1111653	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	4	B134,B138,B31,B33
typical_cds_rare	Chr1	1111654	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	B71
typical_cds_rare	Chr1	1111663	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	5	A2,B127,B129,B14,B89
typical_cds_rare	Chr1	1111664	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	2	B104,B2
lof_cds	Chr1	1111718	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	B71
typical_cds_rare	Chr1	1111718	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	B71
typical_cds_rare	Chr1	1111735	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	5	B117,B122,B30,B90,B92
typical_cds_rare	Chr1	1111751	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	3	B11,C27,C41
typical_cds_rare	Chr1	1111758	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	B2
typical_cds_rare	Chr1	1111800	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	C65
typical_cds_rare	Chr1	1111816	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	B65
typical_cds_rare	Chr1	1112149	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	4	A16,B29,B41,C18
typical_cds_rare	Chr1	1112156	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	3	B104,B2,D1
typical_cds_rare	Chr1	1112157	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	C15
typical_cds_rare	Chr1	1112180	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	5	A16,B29,B41,B74,C18
typical_cds_rare	Chr1	1112220	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	B35
typical_cds_rare	Chr1	1112225	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	B49
lof_cds	Chr1	1112226	CTT	C	INDEL	2bp_deletion	frameshift_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	B99
typical_cds_rare	Chr1	1112226	CTT	C	INDEL	2bp_deletion	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	B99
lof_cds	Chr1	1112229	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	14	B122,B137,B31,B35,B42,B45,B49,B76,C15,C17,C5,C50,C68,D5
lof_cds	Chr1	1112256	CCA	C	INDEL	2bp_deletion	frameshift_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	4	B133,B24,B32,B41
typical_cds_rare	Chr1	1112256	CCA	C	INDEL	2bp_deletion	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	4	B133,B24,B32,B41
lof_cds	Chr1	1112260	C	CGA	INDEL	2bp_insertion	frameshift_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	4	B133,B24,B32,B41
typical_cds_rare	Chr1	1112260	C	CGA	INDEL	2bp_insertion	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	4	B133,B24,B32,B41
lof_cds	Chr1	1112270	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	4	B98,C58,C78,C8
typical_cds_rare	Chr1	1112270	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	4	B98,C58,C78,C8
typical_cds_rare	Chr1	1112273	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	5	A16,B29,B41,B74,C18
lof_cds	Chr1	1112295	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	54	A1,A14,A20,A21,A24,A8,B106,B120,B126,B127,B128,B129,B130,B133,B15,B22,B23,B29,B3,B50,B51,B63,B65,B66,B68,B74,B79,B8,B80,B85,B86,B88,B95,C12,C14,C16,C19,C2,C26,C28,C3,C37,C42,C43,C45,C62,C76,C8,C82,C87,C9,D11,D6,D7
typical_cds_rare	Chr1	1112302	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	3	B15,B58,C45
lof_cds	Chr1	1112308	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	48	A1,A16,A5,B105,B112,B113,B126,B13,B130,B136,B21,B26,B27,B30,B31,B36,B44,B49,B54,B62,B66,B71,B73,B82,B88,B90,B91,B92,B97,C15,C17,C2,C23,C31,C33,C38,C49,C5,C60,C62,C65,C72,C8,C85,D4,D5,D6,D7
lof_cds	Chr1	1112313	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	49	A1,A16,A5,B105,B112,B113,B126,B129,B13,B130,B136,B21,B26,B27,B30,B31,B36,B44,B49,B54,B62,B66,B71,B73,B82,B88,B90,B91,B92,B97,C15,C17,C2,C23,C31,C33,C38,C49,C5,C60,C62,C65,C72,C8,C85,D4,D5,D6,D7
lof_cds	Chr1	1112345	G	GCA	INDEL	2bp_insertion	frameshift_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	11	B121,B18,B57,B6,B65,B77,B81,C29,C40,C47,C67
lof_cds	Chr1	1112359	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	3	C20,C58,C69
typical_cds_rare	Chr1	1112359	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	3	C20,C58,C69
lof_cds	Chr1	1112360	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	5	A1,B105,B44,C21,C73
typical_cds_rare	Chr1	1112360	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	5	A1,B105,B44,C21,C73
typical_cds_rare	Chr1	1112364	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	2	A6,D11
typical_cds_rare	Chr1	1112379	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	2	B30,C4
typical_cds_rare	Chr1	1112387	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	B73
typical_cds_rare	Chr1	1112399	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	2	C58,C69
typical_cds_rare	Chr1	1112410	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	4	B27,B55,C17,C43
typical_cds_rare	Chr1	1112437	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	B99
typical_cds_rare	Chr1	1112438	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	C87
lof_cds	Chr1	1112451	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	45	A10,A11,A13,A15,A24,A9,B12,B133,B137,B18,B19,B20,B24,B3,B32,B35,B38,B4,B41,B47,B60,B65,B74,B78,B86,B96,C16,C18,C19,C21,C23,C25,C28,C3,C46,C55,C56,C57,C58,C61,C68,C70,C74,C83,C9
typical_cds_rare	Chr1	1112458	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	C42
lof_cds	Chr1	1112466	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	10	A1,B111,B120,B82,C1,C10,C19,C78,C8,D11
typical_cds_rare	Chr1	1112467	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	1	C15
typical_cds_rare	Chr1	1112472	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	2	B104,B2
lof_cds	Chr1	1112498	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	204	A1,A10,A11,A13,A14,A15,A16,A19,A2,A21,A22,A23,A24,A25,A3,A5,A6,A7,A9,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B111,B112,B113,B115,B117,B118,B119,B12,B120,B121,B122,B125,B126,B127,B128,B129,B130,B131,B132,B133,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B22,B24,B26,B27,B29,B3,B31,B32,B33,B34,B35,B36,B37,B38,B39,B40,B41,B42,B43,B45,B47,B48,B49,B5,B51,B52,B53,B54,B55,B59,B6,B63,B64,B65,B66,B68,B69,B70,B72,B73,B74,B75,B77,B78,B79,B80,B81,B82,B83,B85,B86,B87,B88,B89,B9,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C21,C22,C25,C26,C27,C29,C3,C30,C31,C33,C35,C36,C39,C4,C40,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C54,C55,C56,C57,C58,C62,C64,C66,C68,C69,C7,C70,C71,C72,C74,C75,C76,C77,C78,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D4,D5,D6,D8
typical_cds_rare	Chr1	1112499	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	4	B107,B137,B14,B97
typical_cds_rare	Chr1	1112507	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	4	A11,C35,C62,C80
lof_cds	Chr1	1112514	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	31	A1,B112,B126,B129,B130,B136,B26,B27,B36,B48,B49,B54,B66,B73,B82,B88,B91,B92,B97,C15,C2,C31,C33,C5,C62,C72,C8,C84,C86,D5,D6
typical_cds_rare	Chr1	1112533	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	4	B11,B74,C64,D11
typical_cds_rare	Chr1	1112543	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	4	A16,B135,B140,C13
lof_cds	Chr1	1112544	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131006454	SmilChr01G000067	131006454	rna-XM_057933614.1	12	A10,A24,B133,B20,B78,B86,C25,C3,C60,C68,C70,C83