source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr1	3239072	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	2	A11,B106
lof_cds	Chr1	3239169	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	7	B105,B107,B29,B47,B87,B92,C55
typical_cds_rare	Chr1	3239179	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	1	B131
typical_cds_rare	Chr1	3239213	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	1	B16
lof_cds	Chr1	3239299	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	48	A13,A14,A16,A22,A7,A8,B100,B103,B108,B111,B112,B122,B128,B129,B13,B131,B136,B16,B17,B18,B2,B27,B31,B48,B5,B52,B60,B63,B7,B73,B76,B8,B81,B84,B97,C1,C11,C36,C4,C43,C49,C59,C69,C9,D1,D2,D6,D9
lof_cds	Chr1	3239334	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	38	A18,A20,A21,B104,B108,B124,B125,B133,B134,B21,B26,B30,B33,B4,B53,B54,B77,B84,B95,C11,C12,C15,C17,C19,C2,C20,C37,C42,C47,C56,C57,C6,C60,C65,C8,D2,D3,D4
lof_cds	Chr1	3239337	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	40	A18,A20,A21,A6,B104,B108,B124,B125,B133,B134,B21,B26,B30,B33,B4,B53,B54,B59,B77,B84,B95,C11,C12,C15,C17,C19,C2,C20,C37,C42,C47,C56,C57,C6,C60,C65,C8,D2,D3,D4
lof_cds	Chr1	3239359	C	CTT	INDEL	2bp_insertion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	56	A18,A2,A20,A21,A23,A24,A6,B102,B104,B108,B124,B125,B131,B133,B134,B21,B26,B30,B32,B33,B34,B4,B46,B53,B54,B59,B70,B77,B79,B84,B95,C11,C12,C15,C17,C19,C2,C20,C36,C37,C42,C46,C47,C53,C56,C57,C6,C60,C65,C69,C73,C8,D10,D2,D3,D4
lof_cds	Chr1	3239370	C	CAA	INDEL	2bp_insertion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	52	A18,A2,A20,A21,A23,A24,A6,B102,B104,B108,B124,B125,B131,B133,B134,B21,B23,B26,B30,B33,B34,B4,B46,B53,B54,B59,B70,B77,B84,C12,C17,C19,C2,C20,C37,C39,C42,C45,C46,C47,C56,C57,C6,C60,C65,C69,C73,C8,D10,D2,D3,D4
typical_cds_rare	Chr1	3239381	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	4	B55,C37,C51,C53
lof_cds	Chr1	3239396	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	1	C81
typical_cds_rare	Chr1	3239396	AC	A	INDEL	1bp_deletion	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	1	C81
typical_cds_rare	Chr1	3239401	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	5	B105,B110,B29,C71,C9
typical_cds_rare	Chr1	3239421	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	2	B55,C51
lof_cds	Chr1	3239422	AGG	A	INDEL	2bp_deletion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	27	A1,A21,A6,B108,B125,B131,B133,B15,B30,B53,B79,B84,C15,C19,C2,C20,C37,C39,C47,C5,C56,C6,C69,C76,C82,C85,D10
lof_cds	Chr1	3239425	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	28	A1,A21,A6,B108,B125,B131,B133,B15,B30,B53,B79,B84,C11,C15,C19,C2,C20,C37,C39,C47,C5,C56,C6,C69,C76,C82,C85,D10
typical_cds_rare	Chr1	3239433	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	3	B37,B61,C79
typical_cds_rare	Chr1	3239537	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	4	A25,B140,C20,C55
typical_cds_rare	Chr1	3239586	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	5	B18,B28,B35,B53,B72
typical_cds_rare	Chr1	3239589	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	3	B18,B35,B53
lof_cds	Chr1	3239595	GAT	G	INDEL	2bp_deletion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	19	A10,B104,B105,B109,B120,B131,B14,B66,C11,C12,C15,C17,C20,C30,C36,C53,C57,D6,D7
lof_cds	Chr1	3239598	G	GCC	INDEL	2bp_insertion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	19	A10,B104,B105,B109,B120,B131,B14,B66,C11,C12,C15,C17,C20,C30,C36,C53,C57,D6,D7
lof_cds	Chr1	3239614	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	10	B28,B57,B72,B76,B85,C44,C45,C5,C71,C78
typical_cds_rare	Chr1	3239621	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	2	B140,C55
typical_cds_rare	Chr1	3239628	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	1	C53
typical_cds_rare	Chr1	3239652	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	2	B53,B85
lof_cds	Chr1	3239654	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	21	A15,A19,A5,A6,B131,B139,B22,B47,B51,B54,B69,C1,C22,C36,C56,C6,C62,C81,C85,D10,D4
typical_cds_rare	Chr1	3239671	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	1	C53
lof_cds	Chr1	3239675	CCG	C	INDEL	2bp_deletion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	12	A9,B12,B124,B133,B9,B90,C18,C28,C29,C54,C70,D8
typical_cds_rare	Chr1	3239699	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	4	A11,B106,C77,D9
typical_cds_rare	Chr1	3239701	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	3	B24,B71,C6
typical_cds_rare	Chr1	3239703	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	5	B79,B85,C35,C6,C71
lof_cds	Chr1	3239710	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	82	A16,A19,A4,A5,A6,B101,B103,B106,B113,B115,B117,B118,B123,B124,B126,B130,B131,B135,B139,B18,B22,B24,B25,B28,B30,B31,B32,B36,B37,B41,B43,B44,B45,B47,B51,B54,B59,B63,B64,B65,B66,B68,B69,B71,B72,B73,B74,B80,B87,B91,B93,B94,B96,C1,C10,C14,C22,C23,C24,C32,C33,C35,C36,C37,C56,C58,C6,C60,C61,C71,C72,C73,C74,C8,C81,C83,C84,C85,C87,C9,D10,D4
typical_cds_rare	Chr1	3239742	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	2	B139,B32
lof_cds	Chr1	3239752	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	22	B102,B103,B134,B140,B29,B35,B4,B49,B60,B70,B79,B85,B86,B98,C26,C35,C6,C61,C67,C71,C73,D1
lof_cds	Chr1	3239758	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	4	B25,B39,B95,C25
typical_cds_rare	Chr1	3239758	TC	T	INDEL	1bp_deletion	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	4	B25,B39,B95,C25
typical_cds_rare	Chr1	3239762	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	3	B124,B75,B9
lof_cds	Chr1	3239776	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	76	A2,A20,A4,A6,A7,A8,B10,B101,B102,B106,B115,B123,B126,B130,B133,B134,B135,B19,B2,B20,B21,B25,B27,B30,B33,B4,B40,B42,B43,B44,B45,B46,B47,B51,B52,B54,B55,B64,B65,B72,B73,B78,B79,B80,B87,B91,C1,C19,C20,C22,C23,C28,C30,C32,C33,C34,C42,C46,C47,C52,C56,C64,C65,C66,C68,C7,C72,C73,C77,C81,C83,C84,C87,C9,D1,D5
typical_cds_rare	Chr1	3239817	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	4	B39,B41,B58,C80
lof_cds	Chr1	3239842	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	8	B117,B57,B78,C26,C4,C5,C60,C87
lof_cds	Chr1	3239845	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	143	A1,A11,A13,A18,A2,A20,A23,A4,A8,B1,B10,B100,B101,B102,B109,B11,B114,B117,B118,B12,B120,B123,B124,B126,B13,B130,B131,B135,B136,B139,B140,B15,B16,B17,B18,B19,B2,B20,B21,B28,B3,B30,B34,B35,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B50,B51,B53,B54,B55,B57,B58,B62,B63,B65,B68,B7,B72,B73,B75,B76,B77,B78,B79,B80,B83,B86,B87,B99,C1,C10,C15,C16,C20,C22,C23,C24,C25,C26,C27,C28,C29,C3,C33,C35,C36,C37,C38,C39,C4,C42,C44,C45,C46,C49,C5,C51,C52,C53,C56,C58,C6,C60,C63,C64,C65,C66,C67,C68,C69,C7,C71,C73,C74,C75,C77,C79,C80,C81,C83,C84,C86,C87,C9,D10,D2,D3,D5,D6,D7,D8
typical_cds_rare	Chr1	3239848	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	4	A16,B53,B74,C71
typical_cds_rare	Chr1	3239851	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	1	B90
lof_cds	Chr1	3239887	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	48	A1,A18,A2,A24,A5,B106,B121,B125,B128,B129,B135,B22,B25,B29,B32,B34,B35,B38,B50,B61,B62,B76,B78,B8,B80,B88,B89,B91,B94,C1,C11,C25,C42,C44,C48,C53,C60,C61,C63,C64,C68,C71,C72,C74,C80,D1,D2,D4
typical_cds_rare	Chr1	3239915	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	2	B50,B68
typical_cds_rare	Chr1	3239920	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	4	A25,B140,C20,C55
typical_cds_rare	Chr1	3239934	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	3	B70,C17,D4
typical_cds_rare	Chr1	3239935	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	4	A15,C49,C63,D1
typical_cds_rare	Chr1	3239937	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	1	C66
typical_cds_rare	Chr1	3239951	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	4	A25,B140,C20,C55
lof_cds	Chr1	3239967	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	2	C49,C63
typical_cds_rare	Chr1	3239967	TG	T	INDEL	1bp_deletion	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	2	C49,C63
typical_cds_rare	Chr1	3240012	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	3	A6,B32,B60
lof_cds	Chr1	3240027	C	CGT	INDEL	2bp_insertion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	2	A6,B32
typical_cds_rare	Chr1	3240027	C	CGT	INDEL	2bp_insertion	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	2	A6,B32
typical_cds_rare	Chr1	3240038	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	1	D10
typical_cds_rare	Chr1	3240061	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	3	B130,B53,C59
typical_cds_rare	Chr1	3240063	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	2	C60,D11
lof_cds	Chr1	3240085	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	1	C24
typical_cds_rare	Chr1	3240085	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	1	C24
typical_cds_rare	Chr1	3240102	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	3	C1,C19,D6
typical_cds_rare	Chr1	3240129	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	3	B140,C20,C55
typical_cds_rare	Chr1	3240130	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	3	B140,C20,C55
lof_cds	Chr1	3240170	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	78	A10,A16,A19,A23,A4,A5,A6,B104,B106,B107,B113,B114,B124,B126,B127,B135,B138,B14,B2,B20,B22,B24,B29,B3,B30,B34,B35,B4,B45,B46,B47,B49,B56,B62,B64,B66,B69,B7,B71,B79,B81,B83,B87,B9,B93,B96,C1,C10,C13,C15,C19,C23,C25,C26,C27,C28,C31,C33,C35,C38,C45,C46,C48,C50,C52,C61,C66,C67,C7,C72,C80,C81,C84,C85,C87,D5,D6,D8
typical_cds_rare	Chr1	3240243	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	4	B113,B29,C26,C72
lof_cds	Chr1	3240245	A	AGT	INDEL	2bp_insertion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	1	C72
typical_cds_rare	Chr1	3240245	A	AGT	INDEL	2bp_insertion	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	1	C72
typical_cds_rare	Chr1	3240260	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	4	B113,B29,B96,C72
lof_cds	Chr1	3240276	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	1	C5
typical_cds_rare	Chr1	3240276	TG	T	INDEL	1bp_deletion	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	1	C5
lof_cds	Chr1	3240281	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	4	B106,B25,B8,C16
typical_cds_rare	Chr1	3240281	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	4	B106,B25,B8,C16
typical_cds_rare	Chr1	3240288	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	3	B45,B83,C53
typical_cds_rare	Chr1	3240317	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	3	B120,B85,C84
typical_cds_rare	Chr1	3240342	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130984912	SmilChr01G000189	130984912	rna-XM_057907980.1	2	B131,B31