source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr1	5059420	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	B7
typical_cds_rare	Chr1	5059445	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	3	B104,B131,B76
typical_cds_rare	Chr1	5059447	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	2	B131,B76
typical_cds_rare	Chr1	5059459	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	B104
lof_cds	Chr1	5059476	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	2	B131,C43
typical_cds_rare	Chr1	5059476	T	TGA	INDEL	2bp_insertion	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	2	B131,C43
typical_cds_rare	Chr1	5059494	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	5	A16,B131,B136,B29,C23
typical_cds_rare	Chr1	5059526	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	C6
typical_cds_rare	Chr1	5059537	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	B25
typical_cds_rare	Chr1	5059540	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	A22
typical_cds_rare	Chr1	5059550	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	B70
typical_cds_rare	Chr1	5059555	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	C72
lof_cds	Chr1	5059560	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	71	A1,A11,B101,B102,B107,B109,B11,B112,B113,B117,B118,B120,B122,B124,B126,B13,B132,B133,B134,B136,B138,B2,B20,B22,B24,B29,B30,B31,B36,B37,B4,B42,B43,B50,B51,B55,B61,B63,B64,B65,B67,B68,B70,B71,B80,B81,B84,B85,B86,B90,B97,C11,C12,C13,C17,C19,C20,C22,C23,C39,C47,C52,C55,C56,C63,C7,C70,C72,C79,C81,D2
typical_cds_rare	Chr1	5059571	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	4	A1,B40,B60,C59
typical_cds_rare	Chr1	5059572	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	B55
lof_cds	Chr1	5059606	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	C61
typical_cds_rare	Chr1	5059606	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	C61
typical_cds_rare	Chr1	5059608	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	2	B59,C50
typical_cds_rare	Chr1	5059624	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	2	B37,C55
typical_cds_rare	Chr1	5059644	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	B131
typical_cds_rare	Chr1	5059646	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	2	C29,C66
typical_cds_rare	Chr1	5059670	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	B70
typical_cds_rare	Chr1	5059672	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	5	B124,B22,C25,C27,C83
typical_cds_rare	Chr1	5059707	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	B104
typical_cds_rare	Chr1	5059716	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	5	B22,C25,C27,C83,D2
typical_cds_rare	Chr1	5059728	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	5	A1,B29,B40,B60,B87
lof_cds	Chr1	5059774	G	GGC	INDEL	2bp_insertion	frameshift_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	4	B124,B22,C27,D2
typical_cds_rare	Chr1	5059774	G	GGC	INDEL	2bp_insertion	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	4	B124,B22,C27,D2
lof_cds	Chr1	5059788	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	D10
typical_cds_rare	Chr1	5059788	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	D10
typical_cds_rare	Chr1	5059814	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	2	B80,C61
lof_cds	Chr1	5059821	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	11	A1,A3,B13,B135,B33,B48,B66,B76,C10,C23,D2
lof_cds	Chr1	5059827	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	15	A6,B100,B134,B16,B24,B27,B29,B34,C17,C2,C27,C57,C63,C83,D6
lof_cds	Chr1	5059830	T	TTG	INDEL	2bp_insertion	frameshift_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	14	A6,B100,B134,B24,B27,B29,B34,C17,C2,C27,C57,C63,C83,D6
typical_cds_rare	Chr1	5059856	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	5	A11,B115,B124,B22,D2
lof_cds	Chr1	5059857	CAT	C	INDEL	2bp_deletion	frameshift_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	12	B100,B120,B134,B24,B26,B27,B29,B34,C17,C27,C57,C83
lof_cds	Chr1	5059861	G	GTT	INDEL	2bp_insertion	frameshift_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	12	B100,B120,B134,B24,B26,B27,B29,B34,C17,C27,C57,C83
typical_cds_rare	Chr1	5059866	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	3	B103,B59,C1
typical_cds_rare	Chr1	5059898	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	4	B124,B22,C27,D2
typical_cds_rare	Chr1	5059931	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	2	B131,C43
typical_cds_rare	Chr1	5059947	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	3	C17,D6,D7
typical_cds_rare	Chr1	5059954	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	2	C69,D9
typical_cds_rare	Chr1	5059984	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	4	B103,B59,B6,C1
typical_cds_rare	Chr1	5059998	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	3	B22,C27,D2
typical_cds_rare	Chr1	5060001	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	3	B22,C27,D2
typical_cds_rare	Chr1	5060043	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	5	A8,B44,B79,C11,C35
typical_cds_rare	Chr1	5060045	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	B60
lof_cds	Chr1	5060099	GTA	G	INDEL	2bp_deletion	frameshift_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	C52
typical_cds_rare	Chr1	5060099	GTA	G	INDEL	2bp_deletion	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	C52
lof_cds	Chr1	5060108	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	9	B115,B124,B15,B22,C25,C27,C45,C83,D2
lof_cds	Chr1	5060181	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	2	B80,C61
typical_cds_rare	Chr1	5060181	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	2	B80,C61
typical_cds_rare	Chr1	5060197	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	C40
typical_cds_rare	Chr1	5060237	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	4	B22,C27,C51,D2
lof_cds	Chr1	5060251	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	65	A14,A23,A25,A5,A6,B101,B106,B107,B108,B110,B113,B115,B119,B128,B131,B136,B15,B16,B19,B20,B29,B38,B39,B45,B51,B52,B53,B60,B67,B76,B77,B78,B8,B87,B89,B93,B94,B97,B98,C18,C2,C24,C28,C3,C32,C34,C38,C4,C41,C44,C47,C49,C58,C6,C61,C63,C65,C70,C72,C73,C76,C78,D2,D8,D9
typical_cds_rare	Chr1	5060284	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	2	B22,C27
typical_cds_rare	Chr1	5060303	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	A8
typical_cds_rare	Chr1	5060315	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	C74
typical_cds_rare	Chr1	5060316	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	4	B115,B140,B22,C85
typical_cds_rare	Chr1	5060318	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	A22
typical_cds_rare	Chr1	5060346	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	3	A1,B29,B40
lof_cds	Chr1	5060350	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	C43
typical_cds_rare	Chr1	5060350	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	C43
lof_cds	Chr1	5060384	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	3	C11,C69,D9
typical_cds_rare	Chr1	5060384	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	3	C11,C69,D9
typical_cds_rare	Chr1	5060396	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	5	B101,B24,B68,C48,C85
lof_cds	Chr1	5060426	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	2	B138,B55
typical_cds_rare	Chr1	5060426	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	2	B138,B55
typical_cds_rare	Chr1	5060451	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	B11
typical_cds_rare	Chr1	5060468	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	B11
lof_cds	Chr1	5060508	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	111	A1,A10,A13,A15,A20,A22,A24,A3,A4,A5,A6,A9,B1,B105,B11,B110,B113,B114,B115,B118,B123,B13,B130,B132,B135,B137,B138,B14,B140,B15,B20,B23,B25,B27,B28,B29,B33,B36,B37,B38,B39,B46,B47,B53,B54,B55,B56,B57,B59,B60,B62,B64,B65,B67,B70,B74,B75,B77,B78,B8,B81,B82,B84,B89,B90,B91,B94,B99,C1,C10,C13,C18,C2,C20,C21,C22,C27,C28,C30,C31,C32,C33,C34,C35,C39,C40,C45,C46,C5,C50,C51,C52,C54,C55,C56,C58,C59,C61,C62,C65,C68,C7,C71,C74,C75,C80,C81,C82,C84,C87,D3
typical_cds_rare	Chr1	5060533	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	C40
typical_cds_rare	Chr1	5060550	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	A8
typical_cds_rare	Chr1	5060590	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	2	A22,C63
typical_cds_rare	Chr1	5060613	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	B131
typical_cds_rare	Chr1	5060624	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	2	A22,C63
typical_cds_rare	Chr1	5060632	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	C17
typical_cds_rare	Chr1	5060649	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	5	B40,B60,B81,C18,C59
typical_cds_rare	Chr1	5060654	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	5	B40,B60,B81,C18,C59
typical_cds_rare	Chr1	5060658	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	5	B40,B60,B81,C18,C59
typical_cds_rare	Chr1	5060692	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	D10
typical_cds_rare	Chr1	5060701	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	4	B29,B40,C18,C59
lof_cds	Chr1	5060712	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	B12
typical_cds_rare	Chr1	5060712	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	B12
typical_cds_rare	Chr1	5060715	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	B131
typical_cds_rare	Chr1	5060720	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	B131
typical_cds_rare	Chr1	5060732	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	1	C35
typical_cds_rare	Chr1	5060736	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	4	B131,B44,C26,C35
typical_cds_rare	Chr1	5060756	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007040	SmilChr01G000263	131007040	rna-XM_057934212.1	2	A16,D11