source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr1	6069699	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	D11
typical_cds_rare	Chr1	6069728	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	3	A24,B20,C58
typical_cds_rare	Chr1	6069738	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	B108,B122
typical_cds_rare	Chr1	6069787	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	4	A11,B6,B73,C38
lof_cds	Chr1	6069789	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	13	A13,A25,A7,B44,B79,B81,B84,B97,B98,C56,C59,C60,D9
typical_cds_rare	Chr1	6069799	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	4	C12,C31,C43,D8
lof_cds	Chr1	6069812	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	59	A10,A14,A19,A6,A7,B105,B109,B111,B113,B114,B117,B127,B133,B137,B138,B25,B28,B36,B5,B50,B55,B57,B66,B71,B72,B73,B74,B76,B78,B83,B88,B9,B95,C11,C14,C15,C17,C19,C22,C27,C30,C39,C40,C41,C5,C50,C53,C64,C69,C7,C70,C73,C76,C79,C8,C87,D4,D6,D9
lof_cds	Chr1	6069827	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	9	A11,B103,B140,B16,C12,C32,C38,C57,C68
lof_cds	Chr1	6069844	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	A13,C4
typical_cds_rare	Chr1	6069844	TTG	T	INDEL	2bp_deletion	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	A13,C4
typical_cds_rare	Chr1	6069866	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	D11
typical_cds_rare	Chr1	6069869	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	B112,B57
lof_cds	Chr1	6069876	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	192	A1,A10,A11,A13,A14,A15,A19,A2,A20,A23,A24,A4,A5,A6,A7,A8,A9,B1,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B111,B112,B113,B114,B115,B119,B12,B121,B122,B123,B126,B128,B129,B13,B130,B132,B133,B134,B135,B137,B138,B139,B14,B140,B15,B16,B17,B18,B2,B20,B21,B22,B24,B25,B26,B27,B28,B3,B31,B32,B33,B36,B38,B39,B4,B44,B48,B49,B5,B50,B54,B55,B57,B61,B62,B64,B65,B66,B67,B68,B69,B7,B71,B72,B73,B74,B76,B78,B81,B82,B83,B85,B87,B88,B89,B9,B92,B94,B95,B98,C1,C10,C11,C12,C13,C14,C15,C16,C17,C19,C2,C20,C22,C23,C24,C25,C27,C28,C29,C3,C30,C31,C32,C33,C34,C36,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C49,C5,C50,C51,C52,C53,C54,C55,C57,C58,C59,C6,C60,C62,C63,C64,C65,C66,C67,C68,C69,C7,C71,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C85,C86,C87,D10,D11,D3,D4,D5,D6,D7,D8,D9
lof_cds	Chr1	6069926	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	68	A10,A11,A14,A7,B1,B10,B103,B105,B109,B111,B114,B115,B132,B133,B137,B138,B140,B16,B25,B28,B35,B36,B4,B44,B50,B6,B65,B66,B68,B71,B72,B73,B76,B88,B89,B9,C11,C12,C14,C15,C22,C23,C26,C27,C29,C30,C32,C34,C36,C38,C39,C40,C41,C5,C53,C56,C57,C64,C66,C68,C69,C73,C76,C8,C87,D4,D6,D9
typical_cds_rare	Chr1	6069944	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	D11
typical_cds_rare	Chr1	6069968	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	C19
lof_cds	Chr1	6069971	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	B101
typical_cds_rare	Chr1	6069971	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	B101
lof_cds	Chr1	6070047	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	19	A11,B103,B140,B16,B17,B29,B35,B44,B6,B73,B97,C12,C32,C38,C39,C56,C57,C68,D8
typical_cds_rare	Chr1	6070049	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	C4
typical_cds_rare	Chr1	6070054	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	5	A14,A8,B140,B15,C82
lof_cds	Chr1	6070055	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	15	A21,A9,B103,B107,B119,B123,B134,B25,B31,B37,B87,C22,C3,C80,D11
typical_cds_rare	Chr1	6070067	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	D10
lof_cds	Chr1	6070112	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	B138,B55
typical_cds_rare	Chr1	6070112	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	B138,B55
typical_cds_rare	Chr1	6070142	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	3	A2,B12,B99
typical_cds_rare	Chr1	6070148	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	B82
typical_cds_rare	Chr1	6070153	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	C19
typical_cds_rare	Chr1	6070154	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	5	B132,B14,B26,B64,C19
typical_cds_rare	Chr1	6070156	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	B61
lof_cds	Chr1	6070166	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	B82
typical_cds_rare	Chr1	6070166	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	B82
typical_cds_rare	Chr1	6070168	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	5	B103,B105,B70,D10,D11
typical_cds_rare	Chr1	6070196	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	B105,B70
typical_cds_rare	Chr1	6070231	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	C52
lof_cds	Chr1	6070241	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	5	A3,C12,C31,D11,D7
typical_cds_rare	Chr1	6070241	ATG	A	INDEL	2bp_deletion	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	5	A3,C12,C31,D11,D7
typical_cds_rare	Chr1	6070285	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	D11
typical_cds_rare	Chr1	6070295	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	B82
lof_cds	Chr1	6070307	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	5	B54,B65,C17,C29,D4
typical_cds_rare	Chr1	6070307	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	5	B54,B65,C17,C29,D4
typical_cds_rare	Chr1	6070328	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	4	B105,B33,B62,C43
lof_cds	Chr1	6070348	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	14	A7,B112,B17,B68,B70,B99,C10,C19,C23,C38,C43,C49,C50,C86
typical_cds_rare	Chr1	6070358	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	5	A10,B33,B62,B63,B83
typical_cds_rare	Chr1	6070359	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	C52
typical_cds_rare	Chr1	6070363	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	5	B109,B126,B136,B57,C31
typical_cds_rare	Chr1	6070371	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	3	B129,B70,B76
typical_cds_rare	Chr1	6070376	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	B138
typical_cds_rare	Chr1	6070381	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	4	A10,B13,B33,B62
typical_cds_rare	Chr1	6070397	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	4	B30,B44,C12,C31
typical_cds_rare	Chr1	6070406	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	A9,B103
typical_cds_rare	Chr1	6070411	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	A23,B70
typical_cds_rare	Chr1	6070415	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	B70,B76
lof_cds	Chr1	6070524	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	15	B127,B140,B34,B6,B72,B73,B79,B88,C32,C66,C67,C68,C73,C8,D8
typical_cds_rare	Chr1	6070528	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	B76,D6
typical_cds_rare	Chr1	6070553	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	4	B3,B9,C19,C50
lof_cds	Chr1	6070554	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	26	A11,A15,A3,A4,B104,B129,B133,B17,B20,B4,B50,B53,B64,B65,B75,B81,C12,C25,C31,C52,C64,C66,C7,C86,D11,D7
lof_cds	Chr1	6070562	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	59	A16,A9,B1,B100,B101,B102,B103,B106,B108,B111,B118,B12,B121,B126,B127,B13,B134,B138,B139,B15,B17,B23,B27,B29,B37,B40,B41,B5,B50,B51,B55,B57,B60,B84,B91,B93,B94,B98,B99,C1,C12,C14,C15,C16,C20,C24,C27,C49,C5,C51,C56,C70,C72,C77,C83,D1,D2,D7,D8
typical_cds_rare	Chr1	6070579	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	3	B3,B9,C50
lof_cds	Chr1	6070594	G	GTC	INDEL	2bp_insertion	frameshift_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	9	A15,B4,B50,B64,B65,B75,B81,C7,C86
typical_cds_rare	Chr1	6070612	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	B12,B55
typical_cds_rare	Chr1	6070640	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	3	A25,B54,B90
typical_cds_rare	Chr1	6070657	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	3	B35,B56,D4
typical_cds_rare	Chr1	6070658	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	3	B31,B68,C65
typical_cds_rare	Chr1	6070662	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	B15,B74
lof_cds	Chr1	6071006	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	D1
typical_cds_rare	Chr1	6071006	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	D1
typical_cds_rare	Chr1	6071035	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	B104
typical_cds_rare	Chr1	6071048	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	4	B50,C53,C58,C78
typical_cds_rare	Chr1	6071088	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	B140
lof_cds	Chr1	6071108	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	D11
typical_cds_rare	Chr1	6071108	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	D11
typical_cds_rare	Chr1	6071112	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	B118,C26
typical_cds_rare	Chr1	6071129	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	A3,D7
typical_cds_rare	Chr1	6071252	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	C44
typical_cds_rare	Chr1	6071265	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	5	B101,B119,B3,C24,C46
typical_cds_rare	Chr1	6071279	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	5	B125,B86,C44,C54,C79
typical_cds_rare	Chr1	6071282	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	B34,D11
typical_cds_rare	Chr1	6071298	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	C26
lof_cds	Chr1	6071308	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	B63,C57
typical_cds_rare	Chr1	6071308	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	2	B63,C57
typical_cds_rare	Chr1	6071417	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	D11
typical_cds_rare	Chr1	6071438	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	C39
typical_cds_rare	Chr1	6071440	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	3	B118,B51,C10
typical_cds_rare	Chr1	6071473	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	3	B4,B77,C5
lof_cds	Chr1	6071480	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	C75
typical_cds_rare	Chr1	6071480	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	C75
typical_cds_rare	Chr1	6071484	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	1	B12
typical_cds_rare	Chr1	6071487	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009032	SmilChr01G000315	131009032	rna-XM_057936264.1	5	A1,B62,B83,C39,C70