source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	9583664	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	3	A10,B71,B75
typical_cds_rare	Chr1	9583664	C	CA	INDEL	1bp_insertion	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	3	A10,B71,B75
lof_cds	Chr1	9583665	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	92	A11,A13,A18,A2,A7,B1,B103,B105,B106,B107,B111,B115,B119,B125,B127,B128,B129,B134,B136,B139,B17,B2,B24,B25,B26,B3,B31,B32,B34,B35,B37,B38,B39,B56,B57,B59,B6,B62,B68,B72,B74,B76,B77,B78,B79,B8,B80,B81,B83,B84,B85,B88,B89,B9,B90,B91,B92,B94,B95,B96,B97,B98,B99,C10,C15,C16,C20,C21,C22,C23,C24,C31,C35,C39,C43,C46,C53,C54,C59,C60,C65,C72,C73,C74,C8,C81,C86,C9,D11,D3,D4,D9
lof_cds	Chr1	9583666	AGT	A	INDEL	2bp_deletion	frameshift_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	B9,B94
typical_cds_rare	Chr1	9583666	AGT	A	INDEL	2bp_deletion	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	B9,B94
typical_cds_rare	Chr1	9583691	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	3	B43,C30,C5
lof_cds	Chr1	9583703	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	8	B28,B71,B94,C30,C51,C6,C7,D9
typical_cds_rare	Chr1	9583707	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	5	B43,C3,C30,C5,C87
lof_cds	Chr1	9583724	TAG	T	INDEL	2bp_deletion	frameshift_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	1	D10
typical_cds_rare	Chr1	9583724	TAG	T	INDEL	2bp_deletion	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	1	D10
typical_cds_rare	Chr1	9583825	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	5	B129,B130,C35,C59,D10
lof_cds	Chr1	9583835	G	GCT	INDEL	2bp_insertion	frameshift_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	10	B122,B13,B131,B15,C12,C26,C31,C64,C66,D1
typical_cds_rare	Chr1	9583850	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	5	B71,C35,C49,C54,C59
typical_cds_rare	Chr1	9583886	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	1	A1
typical_cds_rare	Chr1	9583890	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	B71,C49
typical_cds_rare	Chr1	9583910	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	3	B12,B71,C49
lof_cds	Chr1	9583911	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	8	B122,B131,B15,C12,C26,C31,C64,C66
lof_cds	Chr1	9583965	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	7	B138,B70,B79,C60,C65,C70,C80
lof_cds	Chr1	9584014	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	6	B11,B24,B66,C3,C37,C41
typical_cds_rare	Chr1	9584071	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	1	B62
typical_cds_rare	Chr1	9584074	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	5	B11,B115,B28,B9,C40
typical_cds_rare	Chr1	9584084	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	B15,D1
lof_cds	Chr1	9584119	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	81	A10,A15,A19,A22,A24,A25,A3,A5,A6,B1,B102,B103,B104,B107,B110,B113,B117,B118,B12,B121,B132,B133,B135,B137,B14,B22,B23,B25,B26,B27,B34,B35,B38,B39,B47,B5,B50,B53,B54,B58,B61,B65,B66,B67,B7,B70,B80,B82,B83,B84,B89,B93,B95,C16,C18,C21,C3,C30,C39,C4,C40,C42,C45,C5,C50,C53,C55,C58,C61,C62,C75,C77,C78,C79,C8,C80,C83,C84,C85,D10,D8
typical_cds_rare	Chr1	9584130	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	B6,B91
typical_cds_rare	Chr1	9584140	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	1	B129
lof_cds	Chr1	9584161	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	4	B114,B44,B75,C74
typical_cds_rare	Chr1	9584161	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	4	B114,B44,B75,C74
typical_cds_rare	Chr1	9584178	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	3	A10,B75,C71
typical_cds_rare	Chr1	9584182	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	B140,C24
typical_cds_rare	Chr1	9584200	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	3	A10,B75,C71
typical_cds_rare	Chr1	9584212	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	B71,C49
typical_cds_rare	Chr1	9584283	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	3	A16,B29,C42
typical_cds_rare	Chr1	9584311	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	1	C39
typical_cds_rare	Chr1	9584380	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	A10,C71
typical_cds_rare	Chr1	9584449	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	C32,C68
lof_cds	Chr1	9584509	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	1	B55
typical_cds_rare	Chr1	9584509	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	1	B55
typical_cds_rare	Chr1	9584514	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	1	C8
typical_cds_rare	Chr1	9584521	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	1	B129
typical_cds_rare	Chr1	9584529	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	1	B55
typical_cds_rare	Chr1	9584555	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	4	B13,C26,C31,C32
typical_cds_rare	Chr1	9584623	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	1	B130
typical_cds_rare	Chr1	9584673	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	1	C32
typical_cds_rare	Chr1	9584676	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	1	C32
typical_cds_rare	Chr1	9584737	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	1	B130
typical_cds_rare	Chr1	9584755	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	1	B138
typical_cds_rare	Chr1	9584800	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	3	B133,C45,C83
lof_cds	Chr1	9584812	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	100	A11,A13,A2,A24,A7,B103,B105,B106,B107,B111,B115,B119,B123,B125,B127,B128,B129,B132,B134,B136,B139,B17,B2,B22,B24,B25,B26,B29,B3,B31,B32,B34,B35,B37,B38,B39,B46,B47,B56,B57,B59,B6,B62,B72,B74,B76,B77,B78,B79,B8,B80,B81,B83,B84,B85,B88,B89,B90,B91,B95,B96,B97,B98,B99,C10,C15,C16,C18,C20,C21,C22,C23,C24,C28,C3,C31,C35,C39,C42,C43,C46,C50,C53,C54,C59,C60,C63,C65,C72,C73,C74,C77,C8,C81,C86,C9,D11,D3,D4,D9
typical_cds_rare	Chr1	9584847	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	B71,C49
typical_cds_rare	Chr1	9584856	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	5	B129,B132,B42,B43,B55
lof_cds	Chr1	9585002	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	7	B113,B42,B43,B62,C38,C63,C67
typical_cds_rare	Chr1	9585015	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	C32,C68
typical_cds_rare	Chr1	9585030	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	3	A13,C34,C83
typical_cds_rare	Chr1	9585065	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	1	D6
typical_cds_rare	Chr1	9585076	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	5	A18,B16,B8,C22,C67
lof_cds	Chr1	9585078	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	C32,C68
typical_cds_rare	Chr1	9585078	ATG	A	INDEL	2bp_deletion	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	C32,C68
typical_cds_rare	Chr1	9585080	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	B129,D10
lof_cds	Chr1	9585083	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	21	B115,B119,B129,B17,B2,B3,B46,B72,B78,B89,C10,C16,C22,C23,C24,C35,C73,C81,C9,D4,D9
typical_cds_rare	Chr1	9585097	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	5	A11,B129,C32,C68,D10
typical_cds_rare	Chr1	9585108	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	5	B18,B71,B85,C21,C31
typical_cds_rare	Chr1	9585125	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	B66,C26
typical_cds_rare	Chr1	9585146	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	3	B132,B42,B55
typical_cds_rare	Chr1	9585163	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	3	B74,B93,C26
lof_cds	Chr1	9585183	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	20	A2,B103,B125,B25,B31,B6,B78,B8,B80,B81,B92,B98,C15,C31,C39,C46,C48,C53,C60,D3
lof_cds	Chr1	9585188	G	GTA	INDEL	2bp_insertion	frameshift_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	3	B13,B131,C12
typical_cds_rare	Chr1	9585188	G	GTA	INDEL	2bp_insertion	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	3	B13,B131,C12
lof_cds	Chr1	9585195	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	5	B123,B132,B42,B43,B55
typical_cds_rare	Chr1	9585195	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	5	B123,B132,B42,B43,B55
typical_cds_rare	Chr1	9585204	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	3	B122,B131,C64
lof_cds	Chr1	9585209	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	28	A14,A16,A19,A24,A9,B112,B121,B137,B15,B40,B42,B43,B49,B51,B66,B75,B90,B93,B98,C11,C3,C38,C46,C63,C8,C80,C83,D6
typical_cds_rare	Chr1	9585228	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	A3,B54
typical_cds_rare	Chr1	9585239	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	4	B122,B15,C26,C31
lof_cds	Chr1	9585242	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	69	A1,A14,A16,A19,A20,A4,A8,B10,B101,B106,B112,B114,B117,B122,B123,B124,B126,B13,B130,B137,B138,B14,B19,B20,B21,B3,B30,B40,B41,B42,B44,B47,B57,B62,B63,B64,B68,B71,B76,B86,B9,B94,C1,C13,C15,C19,C25,C27,C33,C37,C4,C40,C42,C44,C51,C52,C6,C60,C62,C63,C7,C74,C76,C83,C85,C87,D6,D7,D9
typical_cds_rare	Chr1	9585245	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	B8,C53
typical_cds_rare	Chr1	9585246	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	5	B132,B18,B42,B43,B55
lof_cds	Chr1	9585247	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	B129,B130
typical_cds_rare	Chr1	9585247	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	B129,B130
lof_cds	Chr1	9585248	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	92	A11,A21,A22,A23,A24,A25,A5,A7,B10,B100,B101,B102,B11,B110,B111,B112,B114,B125,B127,B128,B13,B132,B140,B2,B21,B28,B29,B3,B30,B32,B37,B38,B39,B4,B44,B47,B54,B55,B56,B58,B59,B60,B63,B67,B69,B7,B72,B74,B77,B80,B81,B85,B86,B89,B9,B96,B99,C11,C12,C14,C2,C25,C26,C27,C28,C30,C31,C32,C35,C36,C4,C42,C43,C46,C58,C6,C62,C65,C68,C69,C71,C73,C75,C77,C79,C8,C81,C83,C84,D11,D4,D9
typical_cds_rare	Chr1	9585268	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	2	B102,B13
lof_cds	Chr1	9585273	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006532	SmilChr01G000468	131006532	rna-XM_057933685.1	16	A24,B102,B22,B26,B39,B53,B68,B7,B83,C13,C3,C45,C5,C59,C77,C79