source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr1	11072834	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	1	A11
lof_cds	Chr1	11072839	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	15	A1,A16,A22,B129,B132,B2,B44,B69,B82,C1,C16,C34,C63,C67,D6
typical_cds_rare	Chr1	11072870	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	2	B105,C83
lof_cds	Chr1	11072947	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	23	A13,A23,A7,B105,B109,B119,B126,B66,B69,B75,B78,B9,B95,C12,C14,C17,C41,C44,C57,C60,C70,C83,D7
typical_cds_rare	Chr1	11073137	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	4	A6,B115,B12,C49
lof_cds	Chr1	11073144	GGT	G	INDEL	2bp_deletion	frameshift_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	5	A6,B115,B12,B39,C49
typical_cds_rare	Chr1	11073144	GGT	G	INDEL	2bp_deletion	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	5	A6,B115,B12,B39,C49
lof_cds	Chr1	11073147	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	5	B118,B138,B139,B44,C44
typical_cds_rare	Chr1	11073147	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	5	B118,B138,B139,B44,C44
lof_cds	Chr1	11073370	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	44	A21,A3,A5,A6,B102,B103,B104,B105,B113,B114,B12,B120,B137,B138,B24,B28,B31,B33,B38,B39,B49,B5,B57,B59,B63,B71,B83,B89,B97,B99,C29,C3,C39,C4,C57,C6,C64,C66,C84,C85,D1,D10,D2,D9
lof_cds	Chr1	11073372	GCA	G	INDEL	2bp_deletion	frameshift_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	44	A21,A3,A5,A6,B102,B103,B104,B105,B113,B114,B12,B120,B137,B138,B24,B28,B31,B33,B38,B39,B49,B5,B57,B59,B63,B71,B83,B89,B97,B99,C29,C3,C39,C4,C57,C6,C64,C66,C84,C85,D1,D10,D2,D9
lof_cds	Chr1	11073389	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	24	A21,A4,B100,B103,B109,B114,B115,B12,B120,B28,B31,B33,B39,B57,B97,C29,C3,C39,C6,C63,C80,C85,D2,D9
typical_cds_rare	Chr1	11073419	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	1	A11
lof_cds	Chr1	11073473	GAA	G	INDEL	2bp_deletion	frameshift_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	1	B123
typical_cds_rare	Chr1	11073473	GAA	G	INDEL	2bp_deletion	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	1	B123
typical_cds_rare	Chr1	11073489	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	3	B38,B39,C39
lof_cds	Chr1	11073507	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	8	A13,B105,B78,B95,C34,C60,C83,D7
lof_cds	Chr1	11073512	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	9	A19,B123,B29,B76,B79,C13,C22,C30,C51
lof_cds	Chr1	11073592	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	39	A14,A18,A8,B104,B105,B115,B124,B134,B137,B138,B15,B17,B24,B28,B38,B42,B43,B49,B59,B63,B71,B79,B80,B96,B99,C2,C3,C39,C4,C44,C53,C57,C64,C67,C73,C77,C86,D11,D4
lof_cds	Chr1	11073597	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	64	A14,A18,A21,A6,A8,B100,B103,B104,B105,B107,B109,B114,B115,B119,B12,B124,B131,B134,B137,B138,B139,B15,B17,B18,B24,B28,B31,B38,B39,B4,B42,B43,B49,B57,B59,B63,B66,B71,B79,B80,B96,B99,C10,C2,C20,C29,C3,C31,C39,C4,C44,C53,C57,C64,C67,C7,C73,C77,C78,C82,C86,D11,D4,D9
typical_cds_rare	Chr1	11073618	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	2	B38,C39
typical_cds_rare	Chr1	11073636	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	4	B140,B26,B86,D11
lof_cds	Chr1	11073679	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	26	A11,A19,A2,A8,B113,B123,B15,B19,B25,B29,B7,B76,B79,C13,C18,C2,C22,C27,C3,C30,C40,C43,C51,C61,C70,D8
typical_cds_rare	Chr1	11073690	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	2	C54,C74
typical_cds_rare	Chr1	11073711	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	2	C54,C74
typical_cds_rare	Chr1	11073726	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	2	C32,C68
lof_cds	Chr1	11073753	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	7	B10,B107,B11,B133,B16,B31,C83
typical_cds_rare	Chr1	11073765	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	4	B103,B138,B140,B74
lof_cds	Chr1	11073769	TCG	T	INDEL	2bp_deletion	frameshift_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	7	B114,B115,B59,C3,C4,D11,D4
lof_cds	Chr1	11073803	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	9	A2,B25,B8,B80,B81,B98,C15,C31,C53
lof_cds	Chr1	11073847	GTT	G	INDEL	2bp_deletion	frameshift_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	1	C64
typical_cds_rare	Chr1	11073847	GTT	G	INDEL	2bp_deletion	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	1	C64
lof_cds	Chr1	11073850	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	1	C64
typical_cds_rare	Chr1	11073850	C	CAT	INDEL	2bp_insertion	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	1	C64
typical_cds_rare	Chr1	11073865	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	2	B39,B91
typical_cds_rare	Chr1	11073898	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	3	B140,B59,B86
typical_cds_rare	Chr1	11073931	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	2	B80,D4
lof_cds	Chr1	11073939	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	48	A18,A22,A25,A3,B103,B115,B118,B12,B128,B16,B17,B18,B2,B26,B32,B33,B35,B36,B37,B40,B41,B48,B49,B5,B50,B52,B60,B73,B83,B98,B99,C11,C17,C24,C36,C47,C48,C49,C55,C6,C61,C62,C69,C83,D2,D4,D6,D7
lof_cds	Chr1	11073988	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	2	B55,C14
typical_cds_rare	Chr1	11073988	ATT	A	INDEL	2bp_deletion	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	2	B55,C14
lof_cds	Chr1	11074008	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	135	A1,A10,A11,A13,A14,A16,A18,A2,A20,A21,A22,A24,A4,A7,A9,B101,B105,B106,B109,B11,B112,B114,B117,B118,B119,B121,B124,B126,B128,B129,B13,B131,B132,B133,B135,B136,B138,B139,B14,B140,B15,B18,B19,B20,B22,B24,B25,B28,B29,B30,B32,B33,B34,B37,B38,B39,B4,B41,B44,B45,B48,B51,B52,B56,B58,B6,B61,B62,B64,B66,B68,B69,B7,B72,B74,B75,B78,B80,B81,B85,B86,B87,B89,B9,B90,B92,B93,B96,B98,C1,C10,C11,C14,C15,C18,C19,C2,C20,C23,C24,C25,C26,C28,C29,C33,C35,C36,C37,C38,C39,C4,C44,C45,C47,C5,C51,C53,C55,C59,C61,C63,C65,C69,C70,C71,C72,C75,C76,C8,C86,C87,D10,D11,D8,D9
typical_cds_rare	Chr1	11074009	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	1	B55
typical_cds_rare	Chr1	11074024	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	1	B57
typical_cds_rare	Chr1	11074031	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	1	B55
lof_cds	Chr1	11074032	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	135	A10,A11,A14,A16,A18,A2,A21,A22,A24,A4,A7,B10,B101,B105,B106,B107,B109,B11,B112,B114,B117,B118,B119,B122,B124,B126,B128,B129,B13,B131,B132,B133,B135,B136,B138,B139,B140,B15,B16,B17,B18,B19,B20,B22,B24,B25,B28,B29,B30,B31,B33,B37,B38,B39,B4,B44,B45,B47,B48,B51,B52,B56,B58,B6,B61,B62,B64,B66,B67,B68,B69,B7,B72,B74,B75,B80,B81,B84,B85,B86,B87,B9,B90,B92,B93,B94,B96,B98,C1,C10,C11,C14,C15,C18,C19,C2,C20,C23,C24,C25,C26,C28,C33,C35,C36,C37,C38,C39,C4,C43,C44,C45,C47,C5,C51,C53,C55,C56,C59,C61,C63,C69,C70,C71,C72,C75,C76,C8,C83,C86,C9,D10,D11,D8,D9
typical_cds_rare	Chr1	11074046	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	5	B74,B87,B93,C11,C69
typical_cds_rare	Chr1	11074083	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	3	B36,C43,C6
typical_cds_rare	Chr1	11074211	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	1	B65
typical_cds_rare	Chr1	11074220	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	1	C66
typical_cds_rare	Chr1	11074237	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	1	C24
typical_cds_rare	Chr1	11074303	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	3	B126,B9,C44
lof_cds	Chr1	11074355	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	1	C23
typical_cds_rare	Chr1	11074355	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	1	C23
typical_cds_rare	Chr1	11074370	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	3	B140,B59,B86
lof_cds	Chr1	11074371	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	19	A10,A4,A7,B101,B102,B13,B132,B136,B25,B38,B39,B66,B68,B86,B9,C51,C55,C59,C63
lof_cds	Chr1	11074372	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	5	B1,B140,B26,B59,B86
typical_cds_rare	Chr1	11074372	A	AG	INDEL	1bp_insertion	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	5	B1,B140,B26,B59,B86
typical_cds_rare	Chr1	11074428	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019338	SmilChr01G000539	131019338	rna-XM_057947908.1	3	B107,B11,B31