source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	13648126	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	75	A1,A13,A16,A19,A20,A25,A4,A6,A7,B101,B110,B112,B115,B12,B120,B121,B122,B124,B126,B127,B129,B13,B130,B133,B137,B14,B17,B2,B21,B29,B30,B34,B4,B44,B46,B47,B50,B52,B54,B64,B72,B74,B78,B80,B81,B84,B89,B94,C1,C10,C13,C16,C19,C20,C22,C23,C27,C29,C30,C33,C37,C47,C50,C52,C59,C70,C71,C73,C81,C82,C87,C9,D1,D10,D5
typical_cds_rare	Chr1	13648130	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	A18,C15
typical_cds_rare	Chr1	13648136	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	A18,C15
typical_cds_rare	Chr1	13648140	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	A18,C15
typical_cds_rare	Chr1	13648175	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	1	B66
lof_cds	Chr1	13648225	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	C12,C25
typical_cds_rare	Chr1	13648225	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	C12,C25
typical_cds_rare	Chr1	13648232	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	C12,C25
typical_cds_rare	Chr1	13648233	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	C12,C25
typical_cds_rare	Chr1	13648244	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	C12,C25
typical_cds_rare	Chr1	13648255	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	1	C12
typical_cds_rare	Chr1	13648259	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	1	C12
lof_cds	Chr1	13648283	C	CGG	INDEL	2bp_insertion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	B119,C12
typical_cds_rare	Chr1	13648283	C	CGG	INDEL	2bp_insertion	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	B119,C12
typical_cds_rare	Chr1	13648292	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	3	B11,C27,C41
typical_cds_rare	Chr1	13648307	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	5	B119,B85,B95,C12,C19
typical_cds_rare	Chr1	13648316	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	3	B25,C42,C80
lof_cds	Chr1	13648336	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	5	B90,B92,B95,C12,C87
typical_cds_rare	Chr1	13648336	TTG	T	INDEL	2bp_deletion	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	5	B90,B92,B95,C12,C87
lof_cds	Chr1	13648340	T	TCC	INDEL	2bp_insertion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	4	B90,B92,B95,C12
typical_cds_rare	Chr1	13648340	T	TCC	INDEL	2bp_insertion	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	4	B90,B92,B95,C12
lof_cds	Chr1	13648342	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	3	B28,B95,C12
typical_cds_rare	Chr1	13648342	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	3	B28,B95,C12
lof_cds	Chr1	13648348	A	AAC	INDEL	2bp_insertion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	5	B90,B92,B95,C12,C87
typical_cds_rare	Chr1	13648348	A	AAC	INDEL	2bp_insertion	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	5	B90,B92,B95,C12,C87
lof_cds	Chr1	13648350	TCA	T	INDEL	2bp_deletion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	5	B90,B92,B95,C12,C87
typical_cds_rare	Chr1	13648350	TCA	T	INDEL	2bp_deletion	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	5	B90,B92,B95,C12,C87
typical_cds_rare	Chr1	13648369	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	3	B104,C16,D11
lof_cds	Chr1	13648421	C	CGT	INDEL	2bp_insertion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	12	B112,B15,B42,B50,B70,B76,B85,B87,C13,C26,C67,C87
typical_cds_rare	Chr1	13648422	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	1	B129
lof_cds	Chr1	13648423	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	5	B13,C32,C62,C68,C74
typical_cds_rare	Chr1	13648423	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	5	B13,C32,C62,C68,C74
lof_cds	Chr1	13648440	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	13	A20,A3,B101,B105,B106,B110,B140,B21,B22,B52,C28,C62,C74
lof_cds	Chr1	13648443	AAG	A	INDEL	2bp_deletion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	3	B140,C62,C74
typical_cds_rare	Chr1	13648443	AAG	A	INDEL	2bp_deletion	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	3	B140,C62,C74
lof_cds	Chr1	13648450	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	B4,D5
typical_cds_rare	Chr1	13648450	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	B4,D5
lof_cds	Chr1	13648473	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	28	A20,A25,A3,B101,B110,B114,B128,B13,B140,B2,B21,B22,B26,B38,B39,B45,B52,B54,B60,B62,B63,B68,B71,C28,C60,C62,C74,D3
lof_cds	Chr1	13648476	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	29	A10,A20,A25,A3,B101,B105,B110,B114,B128,B13,B140,B2,B22,B26,B38,B39,B45,B52,B54,B60,B62,B63,B68,B71,C28,C60,C62,C74,D3
lof_cds	Chr1	13648483	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	16	A14,A21,A24,A8,B15,B19,B27,B68,C13,C3,C42,C45,C48,C56,C60,C82
typical_cds_rare	Chr1	13648489	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	5	B140,C25,C35,C40,C61
lof_cds	Chr1	13648501	CGT	C	INDEL	2bp_deletion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	12	A20,A3,B101,B105,B110,B20,B21,B22,B52,B63,C28,C3
typical_cds_rare	Chr1	13648514	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	C11,C69
lof_cds	Chr1	13648520	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	1	B100
typical_cds_rare	Chr1	13648520	C	CA	INDEL	1bp_insertion	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	1	B100
typical_cds_rare	Chr1	13648537	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	4	B105,B22,C39,C84
typical_cds_rare	Chr1	13648550	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	A19,B68
lof_cds	Chr1	13648554	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	15	A14,B100,B136,B17,B43,B70,B87,B90,B92,B95,C14,C25,C40,C41,C87
lof_cds	Chr1	13648556	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	25	A19,A20,A3,B101,B110,B130,B19,B20,B21,B22,B29,B38,B45,B47,B48,B52,B68,B71,B9,C28,C3,C58,C60,C74,D3
lof_cds	Chr1	13648559	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	40	A14,A19,A20,A3,B100,B101,B110,B130,B136,B17,B19,B20,B21,B22,B29,B38,B43,B45,B47,B48,B52,B68,B70,B71,B87,B9,B90,B92,B95,C14,C25,C28,C3,C40,C41,C58,C60,C74,C87,D3
lof_cds	Chr1	13648562	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	103	A1,A10,A15,A22,A24,A25,A5,A6,A7,A8,A9,B1,B100,B103,B107,B109,B11,B111,B113,B115,B117,B118,B12,B128,B132,B135,B137,B139,B14,B16,B17,B18,B19,B2,B23,B26,B27,B28,B3,B32,B33,B35,B36,B37,B40,B41,B46,B48,B49,B5,B50,B52,B54,B55,B60,B61,B63,B65,B66,B70,B73,B82,B83,B84,B86,B89,B93,B98,B99,C1,C11,C14,C17,C18,C19,C2,C21,C24,C36,C4,C40,C45,C47,C48,C49,C5,C50,C53,C55,C56,C58,C6,C61,C62,C78,C83,C84,C85,C9,D2,D4,D6,D7
typical_cds_rare	Chr1	13648572	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	1	B100
lof_cds	Chr1	13648582	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	B121,B123
typical_cds_rare	Chr1	13648582	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	B121,B123
lof_cds	Chr1	13648588	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	B121,B123
typical_cds_rare	Chr1	13648588	C	CG	INDEL	1bp_insertion	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	B121,B123
lof_cds	Chr1	13648628	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	49	A11,A20,A5,B103,B106,B114,B131,B134,B136,B138,B139,B24,B28,B31,B44,B57,B58,B6,B62,B68,B71,B74,B76,B79,B91,B94,B95,B97,B99,C10,C11,C13,C20,C21,C28,C30,C43,C51,C65,C69,C7,C72,C74,C8,C85,C86,D1,D11,D3
lof_cds	Chr1	13648632	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	6	B38,B39,B57,B59,C54,C74
lof_cds	Chr1	13648637	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	37	A16,A18,A25,A4,B128,B130,B140,B15,B19,B2,B24,B26,B29,B34,B38,B39,B45,B47,B54,B60,B62,B71,B72,B73,B8,B87,B9,B94,C38,C5,C58,C62,C68,C74,C78,C84,D3
typical_cds_rare	Chr1	13648646	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	C10,D7
typical_cds_rare	Chr1	13648665	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	B75,C68
typical_cds_rare	Chr1	13648668	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	A16,B29
typical_cds_rare	Chr1	13648738	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	4	B103,B6,C1,C67
lof_cds	Chr1	13648739	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	21	B112,B15,B3,B32,B43,B50,B70,B73,B76,B85,B86,B87,B88,C13,C14,C26,C44,C63,C67,C83,C87
typical_cds_rare	Chr1	13648761	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	C10,D7
typical_cds_rare	Chr1	13648790	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	3	B50,B74,B89
typical_cds_rare	Chr1	13648792	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	3	A13,B41,B8
typical_cds_rare	Chr1	13648868	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	B131,C62
lof_cds	Chr1	13648893	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	A19,B68
typical_cds_rare	Chr1	13648893	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	A19,B68
lof_cds	Chr1	13648963	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	46	A14,A8,B10,B104,B109,B111,B112,B119,B125,B126,B129,B136,B17,B2,B27,B3,B32,B40,B42,B50,B51,B74,B76,B78,B85,B88,B89,B90,B92,B95,C12,C20,C25,C26,C27,C35,C40,C41,C6,C63,C67,C83,C87,D10,D4,D8
lof_cds	Chr1	13648976	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	69	A13,A18,A19,A20,A3,A6,B10,B101,B102,B103,B105,B106,B11,B110,B112,B114,B120,B121,B133,B134,B135,B19,B20,B21,B22,B25,B35,B36,B45,B52,B55,B57,B59,B6,B60,B64,B65,B70,B75,B83,B86,B88,B9,B94,B99,C1,C10,C15,C21,C28,C3,C30,C35,C40,C41,C51,C52,C57,C59,C63,C65,C67,C75,C77,C8,C80,C81,D8,D9
lof_cds	Chr1	13648977	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	3	A6,B67,C10
typical_cds_rare	Chr1	13648977	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	3	A6,B67,C10
typical_cds_rare	Chr1	13648983	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	A19,B68
typical_cds_rare	Chr1	13649076	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	2	A19,B68
typical_cds_rare	Chr1	13649084	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022621	SmilChr01G000619	131022621	rna-XM_057952163.1	4	A16,B128,B130,B15