source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	25111964	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	2	B36,C38
typical_cds_rare	Chr1	25111964	A	AC	INDEL	1bp_insertion	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	2	B36,C38
lof_cds	Chr1	25112020	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	1	C77
typical_cds_rare	Chr1	25112020	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	1	C77
typical_cds_rare	Chr1	25112043	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	1	B140
typical_cds_rare	Chr1	25112095	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	4	B61,B7,C42,C81
typical_cds_rare	Chr1	25112147	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	1	C87
lof_cds	Chr1	25112206	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	2	B131,C87
typical_cds_rare	Chr1	25112206	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	2	B131,C87
typical_cds_rare	Chr1	25112211	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	4	B132,C21,C6,D8
lof_cds	Chr1	25112216	TCA	T	INDEL	2bp_deletion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	2	B131,C87
typical_cds_rare	Chr1	25112216	TCA	T	INDEL	2bp_deletion	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	2	B131,C87
typical_cds_rare	Chr1	25112239	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	2	B131,C87
lof_cds	Chr1	25112240	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	2	B131,C87
typical_cds_rare	Chr1	25112240	TTC	T	INDEL	2bp_deletion	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	2	B131,C87
lof_cds	Chr1	25112243	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	2	B131,C87
typical_cds_rare	Chr1	25112243	C	CAT	INDEL	2bp_insertion	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	2	B131,C87
typical_cds_rare	Chr1	25112253	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	5	A18,B120,B131,B95,C87
typical_cds_rare	Chr1	25112299	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	1	B124
lof_cds	Chr1	25112301	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	76	A10,A13,A15,A18,A19,A22,A4,B100,B103,B107,B109,B11,B112,B113,B12,B120,B122,B125,B126,B13,B131,B133,B134,B135,B137,B139,B14,B140,B24,B26,B29,B31,B32,B35,B4,B41,B52,B59,B6,B62,B63,B64,B67,B69,B9,B90,B95,B98,B99,C12,C14,C16,C2,C21,C23,C24,C34,C4,C47,C53,C55,C6,C61,C62,C63,C68,C70,C77,C8,C83,C84,C87,C9,D2,D6,D9
typical_cds_rare	Chr1	25112308	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	1	D8
lof_cds	Chr1	25112323	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	83	A10,A13,A15,A18,A19,A22,A4,B10,B101,B103,B107,B109,B11,B112,B113,B117,B12,B122,B125,B126,B13,B133,B134,B135,B137,B139,B14,B140,B2,B24,B26,B29,B31,B32,B35,B39,B4,B40,B41,B52,B58,B59,B6,B62,B63,B64,B67,B69,B9,B90,B92,B98,B99,C12,C14,C16,C2,C21,C23,C24,C34,C39,C4,C47,C53,C55,C59,C6,C61,C62,C63,C67,C68,C70,C77,C8,C83,C84,C87,C9,D2,D6,D9
lof_cds	Chr1	25112326	A	ATT	INDEL	2bp_insertion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	83	A10,A13,A15,A18,A19,A22,A4,B10,B101,B103,B107,B109,B11,B112,B113,B117,B12,B122,B125,B126,B13,B133,B134,B135,B137,B139,B14,B140,B2,B24,B26,B29,B31,B32,B35,B39,B4,B40,B41,B52,B58,B59,B6,B62,B63,B64,B67,B69,B9,B90,B92,B98,B99,C12,C14,C16,C2,C21,C23,C24,C34,C39,C4,C47,C53,C55,C59,C6,C61,C62,C63,C67,C68,C70,C77,C8,C83,C84,C87,C9,D2,D6,D9
typical_cds_rare	Chr1	25112330	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	1	B94
typical_cds_rare	Chr1	25112331	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	5	B132,B37,C21,C6,D8
lof_cds	Chr1	25112333	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	77	A10,A13,A15,A18,A19,A22,A4,A8,B10,B101,B103,B107,B109,B11,B112,B113,B117,B122,B125,B126,B13,B133,B134,B135,B137,B139,B14,B140,B2,B24,B26,B29,B31,B32,B35,B39,B4,B40,B41,B52,B58,B59,B6,B62,B63,B64,B69,B90,B92,B98,B99,C12,C14,C16,C2,C21,C23,C24,C39,C4,C47,C53,C55,C59,C6,C61,C62,C68,C70,C77,C8,C83,C84,C87,C9,D6,D9
lof_cds	Chr1	25112340	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	78	A10,A13,A15,A18,A19,A22,A4,A8,B10,B101,B103,B107,B109,B11,B112,B113,B117,B122,B125,B126,B13,B133,B134,B135,B137,B139,B14,B140,B2,B24,B26,B29,B31,B32,B35,B39,B4,B40,B41,B51,B52,B58,B59,B6,B62,B63,B64,B69,B90,B92,B98,B99,C12,C14,C16,C2,C21,C23,C24,C39,C4,C47,C53,C55,C59,C6,C61,C62,C68,C70,C77,C8,C83,C84,C87,C9,D6,D9
typical_cds_rare	Chr1	25112385	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	4	A23,B19,B49,C54
typical_cds_rare	Chr1	25112419	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	4	B104,B124,C25,C87
typical_cds_rare	Chr1	25112427	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	1	B94
lof_cds	Chr1	25112438	C	CAG	INDEL	2bp_insertion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	3	B99,C23,C4
typical_cds_rare	Chr1	25112438	C	CAG	INDEL	2bp_insertion	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	3	B99,C23,C4
lof_cds	Chr1	25112447	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	1	B67
typical_cds_rare	Chr1	25112447	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	1	B67
lof_cds	Chr1	25112449	AAG	A	INDEL	2bp_deletion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	30	A19,A4,A8,B101,B103,B133,B134,B135,B137,B24,B31,B35,B4,B40,B51,B63,C12,C16,C34,C39,C53,C55,C61,C67,C77,C8,C83,C9,D6,D9
lof_cds	Chr1	25112462	A	ATT	INDEL	2bp_insertion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	30	A19,A8,B101,B103,B133,B134,B135,B137,B24,B31,B35,B4,B40,B51,B63,B67,C12,C16,C34,C39,C53,C55,C61,C67,C77,C8,C83,C9,D6,D9
lof_cds	Chr1	25112469	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	33	A19,A8,B101,B125,B133,B134,B135,B137,B24,B31,B35,B4,B40,B51,B58,B62,B63,B67,B90,C12,C16,C34,C39,C53,C54,C55,C61,C67,C77,C83,C9,D6,D9
lof_cds	Chr1	25112470	T	TTG	INDEL	2bp_insertion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	34	A19,A8,B101,B103,B125,B133,B134,B135,B137,B24,B31,B35,B4,B40,B51,B58,B62,B63,B67,B90,C12,C16,C34,C39,C53,C54,C55,C61,C67,C77,C83,C9,D6,D9
lof_cds	Chr1	25112492	T	TGC	INDEL	2bp_insertion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	17	A19,B125,B137,B24,B35,B4,B49,B51,B62,B63,B90,C16,C54,C55,C61,C67,D9
lof_cds	Chr1	25112495	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	18	A19,A25,B125,B137,B24,B35,B4,B49,B51,B62,B63,B90,C16,C54,C55,C61,C67,D9
lof_cds	Chr1	25112505	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	22	A19,B101,B125,B133,B135,B137,B24,B31,B35,B4,B49,B51,B63,B90,C54,C55,C61,C67,C83,C9,D6,D9
lof_cds	Chr1	25112507	TAC	T	INDEL	2bp_deletion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	22	A19,B101,B125,B133,B135,B137,B24,B31,B35,B4,B49,B51,B63,B90,C54,C55,C61,C67,C83,C9,D6,D9
typical_cds_rare	Chr1	25112524	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	5	B132,B37,C21,C6,D8
typical_cds_rare	Chr1	25112531	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	1	C25
typical_cds_rare	Chr1	25112573	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	2	B118,C87
lof_cds	Chr1	25112595	G	GGA	INDEL	2bp_insertion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	103	A1,A10,A11,A13,A20,A21,A3,B1,B100,B101,B103,B104,B111,B114,B117,B118,B119,B121,B126,B127,B129,B132,B17,B18,B19,B2,B20,B29,B30,B34,B35,B36,B37,B38,B39,B40,B42,B43,B44,B48,B50,B52,B57,B6,B60,B61,B63,B64,B66,B7,B70,B71,B72,B79,B81,B87,B93,B94,B97,B98,C1,C10,C11,C12,C13,C14,C17,C19,C21,C24,C25,C27,C30,C31,C32,C35,C37,C38,C41,C42,C43,C5,C53,C59,C6,C60,C61,C64,C66,C69,C7,C71,C75,C78,C81,C85,C87,C9,D1,D10,D11,D4,D8
lof_cds	Chr1	25112598	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	4	B101,B63,C61,C9
typical_cds_rare	Chr1	25112598	TTG	T	INDEL	2bp_deletion	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	4	B101,B63,C61,C9
lof_cds	Chr1	25112601	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	4	B101,B63,C61,C9
typical_cds_rare	Chr1	25112601	CT	C	INDEL	1bp_deletion	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	4	B101,B63,C61,C9
lof_cds	Chr1	25112603	AGG	A	INDEL	2bp_deletion	frameshift_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	4	B101,B63,C61,C9
typical_cds_rare	Chr1	25112603	AGG	A	INDEL	2bp_deletion	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	4	B101,B63,C61,C9
typical_cds_rare	Chr1	25112632	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	5	B132,B37,C21,C6,D8
lof_cds	Chr1	25112663	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131005012	SmilChr01G001250	131005012	rna-XM_057931797.1	11	A11,B103,B114,B121,B132,B37,B52,B98,C64,C66,D4