source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	25601362	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	6	A13,B112,B25,B75,C42,C46
typical_cds_rare	Chr1	25601386	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	1	B60
lof_cds	Chr1	25601401	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	16	A5,B103,B111,B112,B137,B21,B28,B31,B54,B60,C27,C37,C43,C45,C61,C9
lof_cds	Chr1	25601410	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	52	A10,A19,A20,A24,A6,A9,B1,B108,B110,B112,B113,B121,B128,B138,B140,B20,B39,B53,B75,B76,B80,B83,B96,C10,C16,C19,C2,C23,C24,C25,C28,C3,C33,C46,C47,C49,C54,C57,C6,C64,C66,C68,C7,C70,C77,C82,C85,C86,D4,D5,D7,D8
lof_cds	Chr1	25601413	AGG	A	INDEL	2bp_deletion	frameshift_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	69	A10,A15,A19,A20,A24,A5,A6,A9,B1,B103,B108,B110,B111,B112,B113,B121,B128,B137,B138,B140,B16,B20,B21,B28,B31,B39,B53,B54,B60,B74,B75,B76,B80,B83,B96,C10,C16,C19,C2,C23,C24,C27,C28,C3,C33,C37,C43,C45,C46,C49,C54,C57,C6,C61,C64,C66,C68,C7,C70,C77,C80,C82,C85,C86,C9,D4,D5,D7,D8
typical_cds_rare	Chr1	25601633	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	1	C34
typical_cds_rare	Chr1	25601650	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	1	C64
typical_cds_rare	Chr1	25601652	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	1	B26
typical_cds_rare	Chr1	25601659	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	1	C45
lof_cds	Chr1	25601665	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	63	A14,A19,A24,A7,A8,B1,B101,B102,B105,B117,B12,B123,B125,B13,B130,B14,B15,B17,B2,B27,B31,B33,B35,B49,B56,B58,B59,B6,B67,B68,B69,B74,B81,B85,B89,B90,B92,B94,B95,C14,C15,C17,C19,C20,C28,C29,C31,C36,C4,C41,C42,C46,C48,C49,C51,C62,C64,C65,C66,C75,C87,D1,D6
typical_cds_rare	Chr1	25601684	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	2	B99,C87
typical_cds_rare	Chr1	25601699	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	5	B41,B76,B80,C40,C41
typical_cds_rare	Chr1	25601712	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	4	B80,C41,C49,C64
typical_cds_rare	Chr1	25601715	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	3	B80,C49,C64
typical_cds_rare	Chr1	25601717	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	3	B80,C49,C64
lof_cds	Chr1	25601733	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	1	B140
typical_cds_rare	Chr1	25601733	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	1	B140
lof_cds	Chr1	25601736	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	3	B5,C29,C6
typical_cds_rare	Chr1	25601736	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	3	B5,C29,C6
lof_cds	Chr1	25601750	ATC	A	INDEL	2bp_deletion	frameshift_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	5	B117,B21,B46,B59,B89
typical_cds_rare	Chr1	25601750	ATC	A	INDEL	2bp_deletion	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	5	B117,B21,B46,B59,B89
typical_cds_rare	Chr1	25601775	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	4	B121,B59,C49,C52
typical_cds_rare	Chr1	25601795	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	2	B140,C53
typical_cds_rare	Chr1	25601812	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	2	B104,D10
typical_cds_rare	Chr1	25601931	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	1	C82
lof_cds	Chr1	25601967	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	4	B138,B78,C33,C43
typical_cds_rare	Chr1	25601967	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	4	B138,B78,C33,C43
typical_cds_rare	Chr1	25601978	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	2	C53,D7
typical_cds_rare	Chr1	25601998	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	1	D11
lof_cds	Chr1	25602003	C	CTG	INDEL	2bp_insertion	frameshift_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	5	A3,B37,B78,C20,C47
typical_cds_rare	Chr1	25602003	C	CTG	INDEL	2bp_insertion	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	5	A3,B37,B78,C20,C47
typical_cds_rare	Chr1	25602006	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	2	B32,B76
typical_cds_rare	Chr1	25602007	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	2	B32,B76
typical_cds_rare	Chr1	25602009	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	4	B18,B27,B99,C87
typical_cds_rare	Chr1	25602011	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	2	B100,B66
typical_cds_rare	Chr1	25602020	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	2	B100,B66
lof_cds	Chr1	25602040	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	94	A18,A19,A20,A22,A3,A7,A9,B10,B101,B102,B103,B104,B105,B108,B11,B111,B113,B114,B122,B126,B128,B129,B131,B132,B134,B14,B16,B2,B25,B26,B3,B38,B40,B42,B43,B48,B5,B50,B52,B53,B55,B57,B58,B59,B60,B66,B67,B68,B70,B79,B8,B82,B84,B85,B88,B9,B90,B92,B99,C1,C12,C13,C16,C18,C2,C21,C23,C24,C25,C3,C35,C40,C42,C44,C45,C47,C5,C54,C56,C57,C61,C64,C66,C68,C71,C74,C76,C84,C86,C9,D1,D2,D4,D8
typical_cds_rare	Chr1	25602062	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	5	B100,B115,B128,B20,C36
lof_cds	Chr1	25602066	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	17	B120,B125,B127,B138,B22,B51,B7,B78,B83,B87,C22,C27,C37,C41,C59,C6,C77
typical_cds_rare	Chr1	25602080	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	4	B104,B138,B140,C33
typical_cds_rare	Chr1	25602083	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	1	B100
typical_cds_rare	Chr1	25602090	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	1	C82
lof_cds	Chr1	25602110	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	31	A1,A13,A16,A18,A23,A3,B107,B114,B119,B12,B121,B124,B133,B22,B33,B64,B73,B75,B79,B84,B97,C14,C16,C51,C52,C54,C63,C81,D3,D5,D7
typical_cds_rare	Chr1	25602120	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	2	B5,C29
typical_cds_rare	Chr1	25602133	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	4	B139,B32,B76,C37
typical_cds_rare	Chr1	25602134	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	3	C32,C53,C68
lof_cds	Chr1	25602143	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	11	A23,B19,B20,B32,B62,B76,B98,C27,C33,C37,D9
typical_cds_rare	Chr1	25602150	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	4	B115,B128,B20,B98
typical_cds_rare	Chr1	25602168	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	4	B104,B138,B78,C33
typical_cds_rare	Chr1	25602206	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	1	D11
typical_cds_rare	Chr1	25602214	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	5	B139,B32,B76,C37,D11
lof_cds	Chr1	25602311	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	39	A15,A22,A25,A6,B101,B104,B108,B113,B122,B136,B14,B25,B27,B28,B48,B49,B50,B53,B60,B67,B70,B81,B83,B91,B99,C12,C16,C17,C23,C32,C35,C40,C42,C47,C55,C64,C66,C68,D4
lof_cds	Chr1	25602315	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	1	C41
typical_cds_rare	Chr1	25602315	CT	C	INDEL	1bp_deletion	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	1	C41
typical_cds_rare	Chr1	25602320	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	2	B99,C87
typical_cds_rare	Chr1	25602337	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	1	B35
typical_cds_rare	Chr1	25602340	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	4	B111,B68,C6,D2
lof_cds	Chr1	25602364	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	1	B140
typical_cds_rare	Chr1	25602364	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	1	B140
lof_cds	Chr1	25602406	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	6	B110,B16,B6,B8,B88,C67
lof_cds	Chr1	25602429	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131005117	SmilChr01G001282	131005117	rna-XM_057931935.1	218	A1,A10,A14,A16,A18,A19,A2,A20,A22,A23,A24,A25,A3,A4,A5,A7,A8,A9,B1,B10,B100,B101,B102,B103,B105,B106,B107,B109,B11,B110,B111,B114,B115,B117,B118,B119,B12,B120,B121,B123,B124,B125,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B138,B139,B14,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B26,B27,B29,B3,B32,B33,B34,B35,B36,B38,B39,B4,B40,B42,B43,B44,B45,B46,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B65,B66,B67,B69,B7,B73,B74,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C14,C15,C17,C18,C19,C2,C21,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C40,C41,C42,C43,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C65,C68,C69,C7,C70,C71,C72,C74,C75,C76,C77,C78,C79,C8,C80,C81,C83,C84,C85,C86,C9,D1,D2,D3,D4,D5,D6,D7,D8,D9