source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr1	28736829	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	1	B1
typical_cds_rare	Chr1	28736872	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	2	C19,C6
lof_cds	Chr1	28736878	GAA	G	INDEL	2bp_deletion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	3	B19,C19,C6
typical_cds_rare	Chr1	28736878	GAA	G	INDEL	2bp_deletion	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	3	B19,C19,C6
lof_cds	Chr1	28736882	T	TTC	INDEL	2bp_insertion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	3	B19,C19,C6
typical_cds_rare	Chr1	28736882	T	TTC	INDEL	2bp_insertion	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	3	B19,C19,C6
typical_cds_rare	Chr1	28736884	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	1	C80
lof_cds	Chr1	28736894	GCC	G	INDEL	2bp_deletion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	3	B19,C19,C6
typical_cds_rare	Chr1	28736894	GCC	G	INDEL	2bp_deletion	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	3	B19,C19,C6
typical_cds_rare	Chr1	28736904	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	5	B19,C19,C6,C80,D3
typical_cds_rare	Chr1	28736936	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	3	A5,C80,D3
typical_cds_rare	Chr1	28736953	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	1	B132
lof_cds	Chr1	28736996	GTA	G	INDEL	2bp_deletion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	19	A15,A19,A7,B126,B129,B133,B35,B58,B69,B71,C16,C2,C25,C27,C31,C32,C35,C52,D6
lof_cds	Chr1	28737003	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	4	A5,B36,C80,D3
typical_cds_rare	Chr1	28737003	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	4	A5,B36,C80,D3
lof_cds	Chr1	28737011	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	8	B130,B70,B90,B92,C60,C70,C80,C87
lof_cds	Chr1	28737179	A	ATG	INDEL	2bp_insertion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	60	A14,A15,A16,A18,A2,A24,A6,B102,B11,B118,B123,B129,B132,B135,B139,B17,B19,B20,B21,B3,B30,B38,B41,B42,B45,B49,B60,B64,B65,B67,B68,B69,B71,B75,B79,B99,C14,C19,C21,C22,C24,C27,C29,C32,C34,C47,C5,C57,C58,C6,C71,C75,C77,C78,C79,C81,C83,C85,D2,D6
lof_cds	Chr1	28737181	T	TCG	INDEL	2bp_insertion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	94	A10,A13,A18,A19,A20,A24,A7,B100,B108,B11,B117,B122,B123,B124,B128,B130,B131,B133,B135,B138,B14,B15,B20,B21,B22,B24,B27,B33,B35,B37,B38,B39,B40,B44,B55,B56,B57,B62,B64,B69,B7,B71,B74,B76,B79,B8,B80,B85,B87,B88,B89,B93,B95,B96,C11,C12,C13,C17,C2,C20,C22,C23,C25,C27,C30,C31,C32,C36,C44,C47,C48,C51,C55,C58,C62,C67,C68,C69,C7,C71,C73,C77,C78,C79,C8,C80,C82,C83,C84,C86,C9,D3,D5,D8
lof_cds	Chr1	28737185	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	11	A18,A6,B20,B49,B60,B64,B79,C5,C6,C78,C79
typical_cds_rare	Chr1	28737195	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	3	B90,B92,C87
typical_cds_rare	Chr1	28737227	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	2	B41,C34
lof_cds	Chr1	28737234	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	132	A1,A10,A14,A15,A16,A18,A19,A2,A20,A22,A24,A5,A6,A8,B10,B100,B102,B108,B11,B111,B112,B115,B118,B121,B123,B126,B128,B129,B13,B131,B132,B133,B134,B135,B136,B139,B140,B15,B17,B19,B2,B20,B21,B22,B26,B27,B28,B29,B3,B30,B35,B38,B39,B4,B41,B42,B43,B45,B47,B49,B5,B51,B56,B58,B61,B64,B65,B68,B69,B71,B75,B76,B77,B78,B79,B80,B81,B86,B87,B96,B97,B99,C10,C11,C13,C14,C19,C2,C20,C21,C22,C24,C25,C27,C29,C30,C31,C32,C34,C35,C39,C47,C49,C5,C51,C52,C54,C55,C56,C57,C58,C6,C60,C62,C68,C69,C70,C71,C74,C75,C76,C77,C78,C81,C83,C84,C85,C87,C9,D2,D5,D6
typical_cds_rare	Chr1	28737247	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	1	C35
lof_cds	Chr1	28737262	G	GGT	INDEL	2bp_insertion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	7	B70,B76,B90,C52,C60,C65,C80
lof_cds	Chr1	28737310	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	8	B125,B130,B70,B90,C52,C60,C65,C87
lof_cds	Chr1	28737318	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	1	C55
typical_cds_rare	Chr1	28737318	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	1	C55
typical_cds_rare	Chr1	28737363	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	5	A5,B110,B36,B53,C80
typical_cds_rare	Chr1	28737454	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	1	B105
typical_cds_rare	Chr1	28737458	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	4	B70,C60,C65,C80
lof_cds	Chr1	28737621	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	11	B110,B115,B138,B18,B36,B50,B63,B90,B92,B97,D8
lof_cds	Chr1	28737623	C	CAA	INDEL	2bp_insertion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	9	B115,B138,B18,B36,B50,B63,B90,B92,D8
lof_cds	Chr1	28737624	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	2	B110,B97
typical_cds_rare	Chr1	28737624	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	2	B110,B97
lof_cds	Chr1	28737645	A	AGG	INDEL	2bp_insertion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	24	A20,A7,B100,B111,B129,B2,B47,B49,B58,B68,B70,B81,C21,C25,C35,C39,C56,C58,C68,C70,C81,C87,C9,D5
lof_cds	Chr1	28737675	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	9	B110,B114,B138,B36,B42,B50,B90,B97,D8
lof_cds	Chr1	28737682	G	GTC	INDEL	2bp_insertion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	9	B110,B114,B36,B42,B50,B73,B90,B97,D8
lof_cds	Chr1	28737719	G	GAT	INDEL	2bp_insertion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	5	B45,C31,C69,C84,D6
typical_cds_rare	Chr1	28737719	G	GAT	INDEL	2bp_insertion	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	5	B45,C31,C69,C84,D6
lof_cds	Chr1	28737722	GAA	G	INDEL	2bp_deletion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	5	B45,C31,C69,C84,D6
typical_cds_rare	Chr1	28737722	GAA	G	INDEL	2bp_deletion	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	5	B45,C31,C69,C84,D6
lof_cds	Chr1	28737732	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	34	A19,A20,B121,B123,B129,B18,B24,B26,B29,B34,B39,B41,B43,B45,B47,B5,B61,B65,B68,B84,B99,C29,C31,C35,C49,C54,C6,C68,C69,C70,C78,C84,C9,D6
lof_cds	Chr1	28737734	AGG	A	INDEL	2bp_deletion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	31	A19,A20,B121,B123,B129,B24,B26,B29,B39,B41,B43,B45,B47,B5,B61,B65,B68,B99,C29,C31,C35,C49,C54,C6,C68,C69,C70,C78,C84,C9,D6
typical_cds_rare	Chr1	28737749	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	1	D11
lof_cds	Chr1	28737753	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	1	C30
typical_cds_rare	Chr1	28737753	A	ACC	INDEL	2bp_insertion	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	1	C30
typical_cds_rare	Chr1	28737785	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	2	B50,C80
lof_cds	Chr1	28737788	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	2	B34,B84
typical_cds_rare	Chr1	28737788	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	2	B34,B84
lof_cds	Chr1	28737794	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	2	B130,B50
typical_cds_rare	Chr1	28737794	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	2	B130,B50
lof_cds	Chr1	28737797	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	1	B130
typical_cds_rare	Chr1	28737797	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	1	B130
lof_cds	Chr1	28737800	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	1	A8
typical_cds_rare	Chr1	28737800	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	1	A8
typical_cds_rare	Chr1	28737807	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005735	SmilChr01G001493	131005735	rna-XM_057932793.1	3	B10,B18,B34