source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	31663005	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	157	A1,A13,A18,A2,A20,A21,A22,A24,A25,A3,A4,A5,A7,A8,B1,B10,B100,B102,B103,B105,B106,B107,B108,B109,B111,B113,B115,B117,B119,B120,B126,B127,B128,B13,B130,B133,B135,B137,B138,B14,B15,B16,B18,B19,B2,B20,B21,B24,B25,B26,B27,B29,B30,B31,B33,B34,B36,B38,B39,B40,B41,B42,B44,B45,B46,B47,B50,B53,B54,B55,B56,B57,B58,B59,B6,B60,B64,B65,B66,B68,B69,B7,B73,B75,B76,B77,B80,B82,B83,B86,B9,B91,B94,B95,B96,B97,B99,C12,C13,C17,C18,C19,C20,C21,C22,C23,C24,C27,C28,C3,C30,C31,C32,C33,C34,C35,C38,C39,C40,C44,C46,C49,C5,C50,C51,C54,C55,C57,C59,C6,C60,C61,C63,C65,C67,C68,C71,C73,C75,C76,C77,C78,C79,C8,C80,C81,C82,C84,C85,C86,C87,C9,D10,D11,D4,D5,D7
lof_cds	Chr1	31663014	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	45	A11,A19,A2,B108,B110,B12,B123,B124,B125,B132,B135,B136,B23,B24,B26,B29,B30,B42,B43,B46,B48,B71,B72,B79,B8,B81,B82,B90,B92,B98,C19,C25,C33,C39,C46,C52,C53,C54,C56,C72,C74,C78,C83,D2,D6
typical_cds_rare	Chr1	31663015	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	4	A8,B27,B28,C83
typical_cds_rare	Chr1	31663044	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	2	B79,C54
typical_cds_rare	Chr1	31663079	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	5	B28,B68,C42,C54,D2
typical_cds_rare	Chr1	31663087	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	C54
lof_cds	Chr1	31663105	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	3	B100,B47,D7
typical_cds_rare	Chr1	31663105	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	3	B100,B47,D7
typical_cds_rare	Chr1	31663112	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	D10
lof_cds	Chr1	31663137	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	18	A14,A23,A8,B101,B103,B13,B133,B138,B139,B22,B27,B28,B32,C20,C3,C51,C56,C83
typical_cds_rare	Chr1	31663139	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	C13
lof_cds	Chr1	31663175	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	7	B114,B31,B50,B95,C21,C7,D1
typical_cds_rare	Chr1	31663179	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	C13
lof_cds	Chr1	31663184	G	GCA	INDEL	2bp_insertion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	2	B93,C54
typical_cds_rare	Chr1	31663184	G	GCA	INDEL	2bp_insertion	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	2	B93,C54
typical_cds_rare	Chr1	31663217	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	3	B129,B22,B7
typical_cds_rare	Chr1	31663263	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	D11
lof_cds	Chr1	31663290	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	23	A16,A20,B101,B106,B117,B120,B139,B15,B16,B18,B25,B47,B57,B6,B66,B75,B77,B95,C34,C37,C47,C65,D4
typical_cds_rare	Chr1	31663324	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	3	B100,B47,D7
lof_cds	Chr1	31663344	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	4	A14,C11,C3,C69
typical_cds_rare	Chr1	31663344	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	4	A14,C11,C3,C69
lof_cds	Chr1	31663360	GTA	G	INDEL	2bp_deletion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	159	A1,A18,A2,A20,A21,A22,A24,A25,A3,A4,A5,A7,A8,B1,B10,B100,B102,B103,B105,B106,B107,B108,B109,B111,B113,B115,B117,B118,B119,B120,B126,B127,B128,B13,B130,B133,B135,B137,B138,B14,B15,B16,B17,B18,B19,B2,B20,B21,B24,B25,B26,B27,B29,B30,B31,B33,B34,B36,B37,B38,B39,B40,B41,B42,B43,B44,B45,B46,B49,B50,B53,B54,B55,B56,B57,B58,B59,B6,B60,B64,B65,B66,B68,B69,B7,B73,B74,B76,B77,B80,B82,B83,B86,B9,B91,B94,B95,B96,B97,B99,C12,C17,C18,C19,C20,C21,C22,C23,C24,C27,C28,C3,C30,C31,C32,C33,C34,C35,C38,C39,C40,C44,C46,C49,C5,C50,C51,C54,C55,C57,C59,C6,C60,C61,C63,C65,C67,C68,C71,C73,C75,C76,C77,C78,C79,C8,C80,C81,C82,C84,C85,C86,C87,C9,D10,D11,D4,D5,D7
lof_cds	Chr1	31663364	T	TTG	INDEL	2bp_insertion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	C13
typical_cds_rare	Chr1	31663364	T	TTG	INDEL	2bp_insertion	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	C13
lof_cds	Chr1	31663392	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	12	B123,B125,B17,B59,B75,B85,B87,C41,C57,C75,D3,D9
lof_cds	Chr1	31663398	GAT	G	INDEL	2bp_deletion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	12	B123,B125,B17,B59,B75,B85,B87,C41,C57,C75,D3,D9
lof_cds	Chr1	31663404	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	12	B123,B125,B17,B59,B75,B85,B87,C41,C57,C75,D3,D9
lof_cds	Chr1	31663412	T	TGG	INDEL	2bp_insertion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	12	B123,B125,B17,B59,B75,B85,B87,C41,C57,C75,D3,D9
lof_cds	Chr1	31663433	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	30	A15,A6,B114,B118,B136,B14,B3,B44,B55,B58,B62,B67,B74,B86,B89,B91,B94,C1,C13,C15,C18,C26,C28,C50,C52,C64,C66,C70,C71,C85
typical_cds_rare	Chr1	31663532	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	B109
lof_cds	Chr1	31663537	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	C13
typical_cds_rare	Chr1	31663537	GT	G	INDEL	1bp_deletion	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	C13
lof_cds	Chr1	31663574	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	5	B20,B60,C6,C60,C79
typical_cds_rare	Chr1	31663574	A	AG	INDEL	1bp_insertion	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	5	B20,B60,C6,C60,C79
lof_cds	Chr1	31663576	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	7	B134,B78,C16,C35,C45,C61,C82
typical_cds_rare	Chr1	31663595	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	5	A4,B20,C6,C60,C79
typical_cds_rare	Chr1	31663601	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	4	A4,C6,C60,C79
typical_cds_rare	Chr1	31663604	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	5	A8,B133,B27,B28,C83
typical_cds_rare	Chr1	31663629	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	B67
lof_cds	Chr1	31663657	AAT	A	INDEL	2bp_deletion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	2	B109,C46
typical_cds_rare	Chr1	31663657	AAT	A	INDEL	2bp_deletion	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	2	B109,C46
lof_cds	Chr1	31663660	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	10	A16,B101,B139,B15,B25,B47,B6,C37,C47,D4
lof_cds	Chr1	31663669	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	3	B100,B47,D7
typical_cds_rare	Chr1	31663669	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	3	B100,B47,D7
lof_cds	Chr1	31663672	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	33	A13,A22,A3,A9,B102,B121,B122,B129,B140,B16,B18,B3,B37,B38,B39,B5,B51,B53,B60,B61,B65,B70,B78,B90,B92,B98,C14,C15,C2,C24,C48,C76,D9
typical_cds_rare	Chr1	31663676	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	2	B109,C46
lof_cds	Chr1	31663711	A	ATC	INDEL	2bp_insertion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	2	B109,C46
typical_cds_rare	Chr1	31663711	A	ATC	INDEL	2bp_insertion	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	2	B109,C46
lof_cds	Chr1	31663713	AAG	A	INDEL	2bp_deletion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	2	B109,C46
typical_cds_rare	Chr1	31663713	AAG	A	INDEL	2bp_deletion	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	2	B109,C46
typical_cds_rare	Chr1	31663774	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	5	B28,B68,C42,D11,D2
typical_cds_rare	Chr1	31663779	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	C13
lof_cds	Chr1	31663799	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	12	B110,B135,B29,B30,B92,B99,C15,C2,C51,C61,C64,C8
lof_cds	Chr1	31663805	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	10	B110,B135,B92,B99,C15,C2,C51,C61,C64,C8
lof_cds	Chr1	31663871	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	45	A11,A19,A2,B108,B110,B12,B123,B124,B125,B132,B135,B136,B23,B24,B26,B29,B30,B42,B43,B46,B48,B71,B72,B79,B8,B81,B82,B90,B92,B98,C19,C25,C33,C39,C46,C52,C53,C54,C56,C72,C74,C78,C83,D2,D6
lof_cds	Chr1	31663887	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	10	A25,B110,B112,B126,B88,C2,C23,C6,C63,C67
typical_cds_rare	Chr1	31663919	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	D11
typical_cds_rare	Chr1	31663946	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	B119
typical_cds_rare	Chr1	31663950	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	C13
typical_cds_rare	Chr1	31663952	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	2	B119,D11
lof_cds	Chr1	31663960	A	AGC	INDEL	2bp_insertion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	B119
typical_cds_rare	Chr1	31663960	A	AGC	INDEL	2bp_insertion	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	B119
typical_cds_rare	Chr1	31663964	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	2	B47,D7
lof_cds	Chr1	31663982	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	7	B134,B78,C16,C35,C45,C61,C82
typical_cds_rare	Chr1	31663991	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	B119
lof_cds	Chr1	31664001	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	47	A14,A16,A7,B104,B107,B109,B11,B112,B124,B129,B130,B22,B23,B4,B48,B49,B51,B52,B54,B63,B67,B69,B7,B70,B72,B83,B84,B85,B88,B89,C11,C14,C17,C29,C31,C38,C4,C41,C42,C43,C47,C53,C59,C69,D3,D5,D8
typical_cds_rare	Chr1	31664013	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	B119
typical_cds_rare	Chr1	31664014	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	B119
lof_cds	Chr1	31664020	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	7	B134,C13,C16,C35,C45,C61,C82
typical_cds_rare	Chr1	31664025	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	B119
typical_cds_rare	Chr1	31664027	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	4	B119,B47,C60,D7
typical_cds_rare	Chr1	31664033	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	5	B28,B68,C42,D11,D2
lof_cds	Chr1	31664044	GCA	G	INDEL	2bp_deletion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	43	A11,A19,A2,B108,B12,B123,B124,B125,B132,B135,B136,B23,B24,B26,B29,B30,B42,B43,B46,B48,B71,B72,B79,B8,B82,B90,B92,B98,C19,C25,C33,C39,C46,C52,C53,C54,C56,C72,C74,C78,C83,D2,D6
lof_cds	Chr1	31664140	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	10	A16,B101,B139,B15,B25,B47,B6,C37,C47,D4
lof_cds	Chr1	31664146	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	51	A10,A11,A19,A23,A25,B10,B101,B103,B110,B111,B112,B126,B13,B131,B138,B139,B140,B22,B28,B32,B4,B40,B45,B68,B88,B93,C1,C10,C2,C20,C23,C25,C34,C36,C42,C43,C48,C51,C56,C58,C6,C62,C63,C67,C72,C79,C8,C80,D11,D2,D8
typical_cds_rare	Chr1	31664202	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	C45
typical_cds_rare	Chr1	31664238	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	1	C13
lof_cds	Chr1	31664254	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	47	A14,A16,A7,B104,B107,B109,B11,B112,B124,B129,B130,B22,B23,B4,B48,B49,B51,B52,B54,B63,B67,B69,B7,B70,B72,B83,B84,B85,B88,B89,C11,C14,C17,C29,C31,C38,C4,C41,C42,C43,C47,C53,C59,C69,D3,D5,D8
lof_cds	Chr1	31664255	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	10	A16,B101,B139,B15,B25,B47,B6,C37,C47,D4
typical_cds_rare	Chr1	31664273	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	2	C61,C82
typical_cds_rare	Chr1	31664283	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006301	SmilChr01G001719	131006301	rna-XM_057933497.1	4	A14,C11,C3,C69