source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr1	41661437	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	1	B41
typical_cds_rare	Chr1	41661460	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	3	A3,B113,B25
typical_cds_rare	Chr1	41661677	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	2	B2,D5
lof_cds	Chr1	41662740	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	8	A15,B19,B77,C2,C34,C63,D8,D9
lof_cds	Chr1	41662741	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	8	A15,B19,B77,C2,C34,C63,D8,D9
lof_cds	Chr1	41662743	GCC	G	INDEL	2bp_deletion	frameshift_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	8	A15,B19,B77,C2,C34,C63,D8,D9
lof_cds	Chr1	41662750	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	6	B19,B77,C2,C34,D8,D9
lof_cds	Chr1	41662765	CAG	C	INDEL	2bp_deletion	frameshift_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	4	A15,B96,C62,C63
typical_cds_rare	Chr1	41662765	CAG	C	INDEL	2bp_deletion	CDS_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	4	A15,B96,C62,C63
lof_cds	Chr1	41662766	A	AAC	INDEL	2bp_insertion	frameshift_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	89	A14,A2,A22,A23,A3,A5,A6,A7,B102,B103,B108,B109,B11,B114,B118,B119,B124,B128,B129,B130,B132,B139,B15,B16,B18,B19,B2,B26,B28,B38,B43,B45,B54,B59,B6,B62,B65,B77,B79,B8,B88,B90,B91,B95,B96,B98,C1,C14,C15,C17,C19,C2,C21,C23,C24,C3,C32,C33,C34,C36,C37,C45,C46,C47,C5,C54,C55,C56,C58,C59,C60,C62,C70,C72,C77,C79,C80,C81,C82,C83,C84,C87,C9,D3,D4,D5,D6,D8,D9
lof_cds	Chr1	41662774	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	86	A14,A2,A22,A3,A5,A6,A7,B102,B103,B108,B109,B11,B114,B118,B124,B128,B129,B130,B132,B15,B16,B18,B19,B2,B26,B28,B38,B43,B45,B54,B59,B6,B62,B65,B66,B77,B79,B8,B88,B90,B91,B95,B96,C1,C14,C15,C17,C19,C2,C21,C23,C24,C3,C32,C33,C34,C36,C37,C45,C46,C47,C5,C54,C55,C56,C58,C59,C60,C62,C70,C72,C77,C79,C8,C80,C81,C83,C84,C87,C9,D3,D4,D5,D6,D8,D9
lof_cds	Chr1	41662776	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	4	A15,B96,C62,C63
typical_cds_rare	Chr1	41662776	T	TG	INDEL	1bp_insertion	CDS_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	4	A15,B96,C62,C63
typical_cds_rare	Chr1	41662778	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	2	B101,B87
lof_cds	Chr1	41662779	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	4	A15,B96,C62,C63
typical_cds_rare	Chr1	41662779	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	4	A15,B96,C62,C63
lof_cds	Chr1	41662795	T	TGG	INDEL	2bp_insertion	frameshift_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	90	A15,A2,A22,A23,A3,A5,A7,B102,B103,B109,B11,B114,B119,B124,B128,B129,B130,B132,B15,B16,B18,B19,B2,B26,B27,B28,B31,B38,B43,B45,B48,B59,B6,B62,B65,B66,B71,B77,B79,B8,B85,B88,B90,B91,B95,B96,C1,C14,C15,C17,C19,C2,C21,C23,C24,C3,C32,C33,C34,C36,C37,C45,C46,C47,C50,C54,C55,C56,C58,C59,C60,C62,C63,C70,C77,C79,C8,C80,C81,C82,C83,C84,C87,C9,D3,D4,D5,D6,D8,D9
lof_cds	Chr1	41662796	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	91	A15,A2,A22,A23,A3,A5,A7,B102,B103,B109,B11,B114,B119,B124,B128,B129,B130,B132,B15,B16,B18,B19,B2,B26,B27,B28,B31,B38,B43,B45,B48,B59,B6,B62,B65,B66,B71,B77,B79,B8,B85,B88,B9,B90,B91,B95,B96,C1,C14,C15,C17,C19,C2,C21,C23,C24,C3,C32,C33,C34,C36,C37,C45,C46,C47,C50,C54,C55,C56,C58,C59,C60,C62,C63,C70,C77,C79,C8,C80,C81,C82,C83,C84,C87,C9,D3,D4,D5,D6,D8,D9
lof_cds	Chr1	41662884	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	2	C46,C53
typical_cds_rare	Chr1	41662884	A	AC	INDEL	1bp_insertion	CDS_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	2	C46,C53
lof_cds	Chr1	41662888	GAA	G	INDEL	2bp_deletion	frameshift_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	139	A1,A11,A14,A15,A19,A2,A20,A22,A23,A24,A3,A5,A6,A7,A9,B1,B102,B103,B104,B105,B107,B108,B109,B11,B112,B113,B114,B115,B118,B12,B120,B124,B126,B128,B129,B130,B131,B132,B133,B135,B139,B14,B15,B16,B18,B19,B2,B21,B23,B24,B26,B28,B30,B31,B33,B35,B37,B41,B42,B43,B44,B45,B51,B54,B55,B56,B58,B59,B6,B62,B65,B70,B71,B77,B79,B80,B81,B84,B86,B88,B9,B91,B93,B96,B97,B98,C1,C13,C14,C15,C17,C19,C2,C21,C23,C3,C30,C31,C32,C33,C34,C36,C38,C45,C47,C51,C55,C56,C58,C59,C6,C62,C63,C64,C65,C66,C68,C69,C71,C72,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C86,C87,C9,D10,D3,D4,D6,D8,D9
lof_cds	Chr1	41662891	G	GCC	INDEL	2bp_insertion	frameshift_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	135	A1,A11,A14,A15,A19,A2,A20,A22,A23,A24,A3,A5,A6,A7,A9,B1,B102,B103,B104,B105,B107,B108,B109,B11,B112,B113,B114,B115,B118,B12,B120,B124,B126,B128,B129,B130,B131,B132,B133,B135,B139,B14,B15,B16,B18,B2,B21,B23,B24,B26,B28,B30,B31,B33,B35,B37,B42,B43,B44,B45,B51,B54,B55,B56,B58,B59,B6,B62,B65,B70,B71,B77,B79,B80,B81,B84,B86,B88,B9,B91,B93,B96,B97,B98,C1,C13,C14,C15,C17,C19,C2,C21,C23,C3,C30,C31,C32,C33,C36,C38,C45,C47,C51,C55,C56,C58,C59,C6,C62,C63,C64,C65,C66,C68,C69,C71,C72,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C86,C87,C9,D10,D4,D6,D8,D9
typical_cds_rare	Chr1	41662912	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	1	B23
lof_cds	Chr1	41662915	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	133	A1,A11,A13,A14,A15,A2,A20,A22,A23,A24,A3,A4,A5,A6,A7,A9,B1,B102,B104,B105,B107,B108,B109,B112,B113,B114,B115,B118,B12,B120,B122,B124,B126,B129,B132,B133,B134,B139,B14,B15,B18,B19,B2,B21,B23,B24,B26,B27,B28,B30,B31,B33,B35,B37,B41,B42,B43,B44,B45,B54,B55,B56,B58,B59,B6,B62,B65,B70,B71,B77,B79,B80,B81,B85,B86,B88,B9,B91,B93,B96,B97,B98,C1,C10,C13,C14,C15,C17,C19,C2,C21,C23,C3,C31,C32,C33,C34,C36,C38,C45,C46,C47,C51,C53,C56,C58,C6,C62,C63,C64,C65,C66,C69,C71,C72,C75,C77,C78,C79,C8,C80,C81,C82,C83,C84,C86,C87,C9,D10,D4,D5,D8,D9
typical_cds_rare	Chr1	41662984	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	1	B108
lof_cds	Chr1	41662989	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	6	B102,B12,B23,B37,B56,C6
typical_cds_rare	Chr1	41663179	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	2	B2,D5
typical_cds_rare	Chr1	41665234	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	1	B30
typical_cds_rare	Chr1	41665437	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	3	B5,C71,D9
typical_cds_rare	Chr1	41665453	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	1	D11
typical_cds_rare	Chr1	41665467	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	4	A23,D4,D6,D7
typical_cds_rare	Chr1	41665899	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025223	SmilChr01G002420	131025223	rna-XM_057954883.1	2	C32,C68