source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	43698750	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	23	A11,B107,B110,B112,B115,B119,B15,B17,B18,B2,B34,B36,B49,B5,C25,C31,C5,C55,C71,C74,D11,D8,D9
typical_cds_rare	Chr1	43698780	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	3	B1,B24,B7
lof_cds	Chr1	43698784	CCA	C	INDEL	2bp_deletion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	7	A14,B23,B50,C19,C28,C70,D5
lof_cds	Chr1	43698785	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	73	A1,A13,A21,A4,A6,B1,B100,B104,B108,B113,B115,B118,B12,B120,B121,B124,B125,B129,B13,B132,B134,B136,B139,B16,B2,B20,B24,B31,B32,B33,B35,B42,B43,B46,B51,B54,B55,B59,B65,B68,B69,B71,B76,B85,B9,B90,B92,C1,C10,C13,C17,C19,C20,C23,C40,C41,C42,C46,C47,C48,C49,C51,C52,C59,C64,C66,C80,C83,C85,C87,D10,D11,D2
lof_cds	Chr1	43698788	G	GTA	INDEL	2bp_insertion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	6	A14,B23,B50,C28,C70,D5
typical_cds_rare	Chr1	43698898	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B123,D4
lof_cds	Chr1	43698903	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B123,D4
typical_cds_rare	Chr1	43698903	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B123,D4
lof_cds	Chr1	43698917	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	61	A1,A13,A21,A6,B1,B108,B113,B115,B118,B12,B121,B124,B125,B129,B132,B134,B136,B139,B16,B20,B31,B32,B42,B43,B46,B51,B54,B55,B59,B65,B68,B69,B71,B85,B9,B90,B92,C1,C10,C13,C17,C20,C23,C40,C41,C42,C46,C47,C48,C49,C51,C52,C59,C64,C66,C80,C83,C85,C87,D10,D11
typical_cds_rare	Chr1	43698993	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	3	B1,B24,B7
lof_cds	Chr1	43699037	AAG	A	INDEL	2bp_deletion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B25,C35
typical_cds_rare	Chr1	43699037	AAG	A	INDEL	2bp_deletion	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B25,C35
lof_cds	Chr1	43699038	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	19	A13,A4,B117,B127,B35,B40,B48,B53,B69,B97,C16,C17,C18,C24,C26,C29,C38,C77,D11
typical_cds_rare	Chr1	43699044	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B102,B109
typical_cds_rare	Chr1	43699095	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	3	B1,B108,C23
typical_cds_rare	Chr1	43699098	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	3	B1,B24,B7
typical_cds_rare	Chr1	43699123	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	3	A10,A21,A24
typical_cds_rare	Chr1	43699132	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	5	B125,B90,B92,C64,C66
lof_cds	Chr1	43699145	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	1	B9
typical_cds_rare	Chr1	43699145	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	1	B9
typical_cds_rare	Chr1	43699151	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	1	C18
typical_cds_rare	Chr1	43699158	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	5	B102,B123,C14,C36,C9
typical_cds_rare	Chr1	43699163	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	5	B102,B123,C14,C36,C9
lof_cds	Chr1	43699188	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	48	A13,A23,A24,B10,B102,B107,B117,B127,B130,B14,B15,B16,B17,B24,B25,B34,B35,B40,B41,B48,B53,B61,B64,B68,B69,B84,B89,B95,B97,C12,C13,C16,C18,C24,C25,C27,C33,C38,C41,C45,C64,C74,C75,C77,C78,C86,D3,D9
typical_cds_rare	Chr1	43699207	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B40,C16
lof_cds	Chr1	43699218	C	CAA	INDEL	2bp_insertion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	61	A13,A23,A24,A4,B10,B102,B107,B117,B121,B127,B130,B14,B15,B16,B17,B24,B25,B34,B35,B40,B41,B42,B43,B48,B53,B58,B61,B62,B64,B68,B69,B84,B89,B91,B95,B97,C12,C13,C14,C16,C17,C18,C24,C25,C29,C33,C35,C38,C40,C41,C42,C45,C72,C74,C75,C77,C78,C86,D10,D3,D9
lof_cds	Chr1	43699223	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	10	B102,B123,B128,B64,B9,B97,C14,C15,C36,C9
lof_cds	Chr1	43699227	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B16,C45
typical_cds_rare	Chr1	43699227	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B16,C45
typical_cds_rare	Chr1	43699246	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B16,C45
typical_cds_rare	Chr1	43699253	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	5	A20,B72,C33,C41,C46
typical_cds_rare	Chr1	43699280	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B123,D4
lof_cds	Chr1	43699286	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	10	B102,B109,B128,B64,B9,B97,C15,C34,C36,C9
lof_cds	Chr1	43699419	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	1	D4
typical_cds_rare	Chr1	43699419	T	TA	INDEL	1bp_insertion	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	1	D4
typical_cds_rare	Chr1	43699460	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	5	B16,B18,B35,B40,C45
lof_cds	Chr1	43699507	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	55	A18,A21,A23,A24,B10,B100,B102,B104,B107,B121,B13,B130,B14,B15,B17,B2,B24,B33,B34,B35,B41,B46,B58,B61,B62,B64,B68,B7,B72,B78,B84,B89,B95,C12,C13,C14,C16,C19,C25,C27,C33,C40,C41,C42,C45,C64,C66,C72,C74,C75,C78,C85,C86,D2,D3
lof_cds	Chr1	43699508	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B108,D1
typical_cds_rare	Chr1	43699508	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B108,D1
typical_cds_rare	Chr1	43699522	TG	*	INDEL	1bp_deletion	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	1	B31
lof_cds	Chr1	43699671	C	CTG	INDEL	2bp_insertion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	16	A16,B109,B123,B128,B23,B27,B28,B39,B55,B66,B76,C30,C55,C61,C70,D1
lof_cds	Chr1	43699674	T	TTG	INDEL	2bp_insertion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	15	A16,B109,B123,B128,B23,B27,B28,B55,B66,B76,C30,C55,C61,C70,D1
typical_cds_rare	Chr1	43699692	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	C61,C65
typical_cds_rare	Chr1	43699714	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B136,B138
typical_cds_rare	Chr1	43699719	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	1	B12
lof_cds	Chr1	43699732	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	15	A14,B118,B123,B128,B23,B27,B38,B39,B50,B55,B76,B93,C55,C70,D1
lof_cds	Chr1	43699736	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	14	A14,B118,B123,B128,B23,B27,B38,B39,B50,B55,B93,C55,C70,D1
typical_cds_rare	Chr1	43699745	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B136,B138
lof_cds	Chr1	43699753	C	CCA	INDEL	2bp_insertion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	13	A14,B118,B123,B128,B23,B38,B39,B50,B55,B93,C55,C70,D1
lof_cds	Chr1	43699755	AGG	A	INDEL	2bp_deletion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	13	A14,B118,B123,B128,B23,B38,B39,B50,B55,B93,C55,C70,D1
lof_cds	Chr1	43699783	CTA	C	INDEL	2bp_deletion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B136,B138
typical_cds_rare	Chr1	43699783	CTA	C	INDEL	2bp_deletion	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B136,B138
lof_cds	Chr1	43699786	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B136,B138
typical_cds_rare	Chr1	43699786	CT	C	INDEL	1bp_deletion	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	B136,B138
lof_cds	Chr1	43699789	AGG	A	INDEL	2bp_deletion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	3	A14,B118,B136
typical_cds_rare	Chr1	43699789	AGG	A	INDEL	2bp_deletion	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	3	A14,B118,B136
lof_cds	Chr1	43699793	G	GCC	INDEL	2bp_insertion	frameshift_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	A14,B118
typical_cds_rare	Chr1	43699793	G	GCC	INDEL	2bp_insertion	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	A14,B118
typical_cds_rare	Chr1	43699795	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	A14,B118
typical_cds_rare	Chr1	43699801	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	4	A14,B118,B136,B138
typical_cds_rare	Chr1	43699805	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	2	A14,B118
typical_cds_rare	Chr1	43699809	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	1	D10
typical_cds_rare	Chr1	43699817	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008477	SmilChr01G002557	131008477	rna-XM_057935353.1	4	A14,B118,B33,B85