source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	49319336	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	5	B119,B12,B20,B46,D5
typical_cds_rare	Chr1	49319336	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	5	B119,B12,B20,B46,D5
typical_cds_rare	Chr1	49319352	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	2	A18,B81
typical_cds_rare	Chr1	49319364	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	1	B36
typical_cds_rare	Chr1	49319370	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	2	C15,C21
typical_cds_rare	Chr1	49319373	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	1	C35
typical_cds_rare	Chr1	49319378	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	5	B23,B62,B85,C2,D10
lof_cds	Chr1	49319407	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	235	A1,A10,A11,A13,A14,A16,A18,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B5,B50,B51,B52,B53,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B71,B72,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B95,B96,B97,B98,B99,C1,C11,C12,C13,C14,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C3,C30,C31,C32,C33,C34,C35,C36,C37,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C67,C68,C69,C7,C71,C72,C73,C74,C75,C77,C78,C79,C80,C81,C82,C84,C85,C86,C87,D1,D10,D11,D2,D3,D4,D5,D7,D9
lof_cds	Chr1	49319420	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	7	B129,B40,B68,C32,C39,C52,C68
lof_cds	Chr1	49319432	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	7	B50,B57,B98,C28,C55,C73,D3
lof_cds	Chr1	49319472	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	3	B139,B14,B57
typical_cds_rare	Chr1	49319472	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	3	B139,B14,B57
lof_cds	Chr1	49319491	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	2	B23,B85
typical_cds_rare	Chr1	49319491	T	TA	INDEL	1bp_insertion	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	2	B23,B85
typical_cds_rare	Chr1	49319508	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	3	A2,B80,D6
typical_cds_rare	Chr1	49319511	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	2	B42,B43
lof_cds	Chr1	49319562	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	5	B3,B87,C16,C39,C6
typical_cds_rare	Chr1	49319562	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	5	B3,B87,C16,C39,C6
lof_cds	Chr1	49319571	CTA	C	INDEL	2bp_deletion	frameshift_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	10	A16,B108,B33,B40,B47,B63,B89,C32,C42,C50
lof_cds	Chr1	49319574	C	CCA	INDEL	2bp_insertion	frameshift_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	10	A16,B108,B33,B40,B47,B63,B89,C32,C42,C50
typical_cds_rare	Chr1	49319592	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	2	B124,B78
typical_cds_rare	Chr1	49319605	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	5	A22,B4,C29,C36,C38
lof_cds	Chr1	49319629	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	13	B106,B19,B2,B42,B43,B52,B54,B71,B91,C4,C55,C78,D9
typical_cds_rare	Chr1	49319647	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	4	B129,B40,C52,D11
typical_cds_rare	Chr1	49319678	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	1	B104
lof_cds	Chr1	49319733	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	15	A15,A22,A7,B108,B117,B128,B134,B25,B53,B59,B88,C27,C41,C58,C62
typical_cds_rare	Chr1	49319766	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	4	B125,B90,B92,C60
typical_cds_rare	Chr1	49319771	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	2	B117,B16
typical_cds_rare	Chr1	49319785	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	2	C31,C35
lof_cds	Chr1	49319843	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	58	A11,A14,A15,A20,A6,A7,B100,B101,B103,B105,B109,B110,B112,B122,B123,B13,B130,B131,B135,B138,B21,B24,B26,B28,B3,B37,B41,B49,B5,B55,B57,B58,B59,B60,B68,B75,B84,B89,B90,B92,C14,C22,C32,C35,C42,C5,C57,C61,C65,C68,C72,C73,C75,C76,C8,C86,D4,D8
typical_cds_rare	Chr1	49319884	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	2	C31,C35
typical_cds_rare	Chr1	49319902	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	1	D11
typical_cds_rare	Chr1	49319905	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	4	C24,C31,C35,D3
typical_cds_rare	Chr1	49319922	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	2	C24,D3
lof_cds	Chr1	49319929	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	54	A2,A23,A24,A25,A4,A8,B10,B101,B103,B108,B110,B113,B114,B115,B131,B134,B19,B20,B23,B30,B34,B38,B39,B4,B47,B6,B61,B63,B65,B77,B79,B82,B87,B9,B95,C15,C16,C21,C23,C29,C38,C43,C49,C53,C54,C56,C60,C70,C71,C76,C8,D1,D11,D9
typical_cds_rare	Chr1	49319944	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	1	B104
typical_cds_rare	Chr1	49319946	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	4	C24,C78,C87,D3
typical_cds_rare	Chr1	49319947	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	2	C31,C35
typical_cds_rare	Chr1	49319958	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	4	C24,C78,C87,D3
typical_cds_rare	Chr1	49319967	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	4	C24,C78,C87,D3
typical_cds_rare	Chr1	49319994	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	4	B35,B37,B98,C48
lof_cds	Chr1	49320002	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	2	C24,C87
typical_cds_rare	Chr1	49320002	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	2	C24,C87
typical_cds_rare	Chr1	49320043	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	4	B85,C24,C64,C87
typical_cds_rare	Chr1	49320265	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	1	B46
lof_cds	Chr1	49320266	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	17	A19,B102,B139,B14,B29,B45,B48,B57,B61,B81,C1,C15,C51,C63,C66,C68,D5
lof_cds	Chr1	49320269	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	1	C30
typical_cds_rare	Chr1	49320269	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	1	C30
typical_cds_rare	Chr1	49320413	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	1	B132
typical_cds_rare	Chr1	49320416	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	1	B36
typical_cds_rare	Chr1	49320429	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	1	B112
lof_cds	Chr1	49320437	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	60	A11,A14,A15,A20,A6,A7,B100,B103,B105,B107,B109,B110,B112,B122,B123,B13,B130,B131,B135,B138,B21,B24,B26,B28,B3,B37,B41,B49,B5,B55,B57,B58,B59,B60,B68,B75,B84,B89,B90,B92,C14,C22,C32,C35,C40,C42,C5,C57,C61,C65,C68,C72,C73,C75,C76,C8,C82,C83,C86,D4
typical_cds_rare	Chr1	49320439	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	3	C26,C39,C48
lof_cds	Chr1	49320446	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	14	A15,A22,B108,B117,B128,B134,B25,B53,B59,B88,C27,C41,C58,C62
typical_cds_rare	Chr1	49320450	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	4	B109,C26,C39,C48
typical_cds_rare	Chr1	49320456	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	1	B46
typical_cds_rare	Chr1	49320466	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	2	C26,C48
typical_cds_rare	Chr1	49320489	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	1	B104
typical_cds_rare	Chr1	49320536	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	5	A20,B104,C78,C87,D3
typical_cds_rare	Chr1	49320544	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	1	B46
typical_cds_rare	Chr1	49320595	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	2	C31,C35
typical_cds_rare	Chr1	49320605	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	3	B139,B14,B57
typical_cds_rare	Chr1	49320613	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	2	C31,C35
typical_cds_rare	Chr1	49320623	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	1	C70
typical_cds_rare	Chr1	49320656	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	3	B139,B14,B57
typical_cds_rare	Chr1	49320776	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009299	SmilChr01G003027	131009299	rna-XM_057936599.1	3	B125,B90,B92