source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr1	49605190	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	4	B34,B42,C87,D10
typical_cds_rare	Chr1	49605202	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	1	B51
typical_cds_rare	Chr1	49605255	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	4	A16,A8,B61,C54
typical_cds_rare	Chr1	49605258	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	2	A16,A8
typical_cds_rare	Chr1	49605315	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	2	A16,C54
typical_cds_rare	Chr1	49605346	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	4	A16,A8,C54,C67
lof_cds	Chr1	49605396	CCG	C	INDEL	2bp_deletion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	B16,B41,C75
typical_cds_rare	Chr1	49605396	CCG	C	INDEL	2bp_deletion	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	B16,B41,C75
typical_cds_rare	Chr1	49605403	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	A1,B78,B88
typical_cds_rare	Chr1	49605408	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	A1,B78,B88
typical_cds_rare	Chr1	49605423	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	A1,B78,B88
lof_cds	Chr1	49605509	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	7	B15,B50,C20,C3,C32,C68,D11
lof_cds	Chr1	49605539	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	1	B93
typical_cds_rare	Chr1	49605539	C	CA	INDEL	1bp_insertion	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	1	B93
lof_cds	Chr1	49605557	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	5	B113,B118,B124,B74,C40
typical_cds_rare	Chr1	49605557	G	GT	INDEL	1bp_insertion	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	5	B113,B118,B124,B74,C40
lof_cds	Chr1	49605772	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	16	A6,B106,B21,B45,B78,B83,B85,C13,C16,C18,C26,C51,C58,C82,D8,D9
lof_cds	Chr1	49605924	G	GTA	INDEL	2bp_insertion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	B120,C25,C30
typical_cds_rare	Chr1	49605924	G	GTA	INDEL	2bp_insertion	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	B120,C25,C30
lof_cds	Chr1	49605925	C	CAG	INDEL	2bp_insertion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	B120,C25,C30
typical_cds_rare	Chr1	49605925	C	CAG	INDEL	2bp_insertion	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	B120,C25,C30
typical_cds_rare	Chr1	49605930	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	5	A23,B60,B98,C30,C8
lof_cds	Chr1	49605955	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	13	A20,B106,B128,B132,B17,B2,B22,B47,B67,C34,C46,C79,D1
lof_cds	Chr1	49606004	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	1	C82
typical_cds_rare	Chr1	49606004	TA	T	INDEL	1bp_deletion	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	1	C82
typical_cds_rare	Chr1	49606020	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	2	C25,C59
typical_cds_rare	Chr1	49606128	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	2	B87,C31
typical_cds_rare	Chr1	49606148	TAG	*	INDEL	2bp_deletion	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	4	B79,B87,C35,C66
typical_cds_rare	Chr1	49606186	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	B87,B92,C31
typical_cds_rare	Chr1	49606218	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	2	B131,B94
typical_cds_rare	Chr1	49606247	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	A24,B113,C58
lof_cds	Chr1	49606331	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	19	A21,B103,B17,B26,B28,B44,B47,B55,B64,B69,B83,B85,B9,C25,C56,C59,C65,C74,C75
typical_cds_rare	Chr1	49606364	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	1	C63
typical_cds_rare	Chr1	49606404	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	1	C31
typical_cds_rare	Chr1	49606580	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	5	B113,B139,C30,C32,C68
lof_cds	Chr1	49606588	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	2	B36,C59
typical_cds_rare	Chr1	49606588	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	2	B36,C59
typical_cds_rare	Chr1	49606606	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	4	B8,C14,C22,C39
lof_cds	Chr1	49606609	ACT	A	INDEL	2bp_deletion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	4	B49,B8,C14,C22
typical_cds_rare	Chr1	49606609	ACT	A	INDEL	2bp_deletion	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	4	B49,B8,C14,C22
typical_cds_rare	Chr1	49606631	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	1	B124
typical_cds_rare	Chr1	49606647	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	4	A24,B113,B51,C58
typical_cds_rare	Chr1	49606649	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	4	B124,B55,B69,C65
typical_cds_rare	Chr1	49606654	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	B55,B69,C65
typical_cds_rare	Chr1	49606680	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	1	B124
typical_cds_rare	Chr1	49606704	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	B24,B85,B96
lof_cds	Chr1	49606708	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	28	A20,B110,B126,B132,B15,B25,B34,B38,B39,B42,B43,B44,B6,B61,B65,B68,B74,B75,B78,B91,B98,C24,C32,C34,C63,C74,C79,D8
typical_cds_rare	Chr1	49606726	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	1	B82
typical_cds_rare	Chr1	49606754	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	2	B131,B94
lof_cds	Chr1	49606765	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	16	A21,B103,B17,B26,B44,B47,B55,B69,B83,B85,B9,C25,C56,C59,C65,C75
lof_cds	Chr1	49606800	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	B76,B82,C34
typical_cds_rare	Chr1	49606800	A	AC	INDEL	1bp_insertion	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	B76,B82,C34
typical_cds_rare	Chr1	49606865	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	5	B119,B121,B33,C17,C28
lof_cds	Chr1	49606878	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	36	A16,A20,A5,B103,B120,B132,B15,B18,B2,B25,B30,B36,B39,B42,B44,B5,B51,B57,B58,B65,B72,B74,B90,B91,B98,C19,C21,C24,C32,C34,C37,C4,C42,C63,C79,D7
typical_cds_rare	Chr1	49606901	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	5	B119,B121,B33,C17,C28
typical_cds_rare	Chr1	49606927	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	1	B130
typical_cds_rare	Chr1	49606983	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	1	B129
lof_cds	Chr1	49606985	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	2	B83,B91
typical_cds_rare	Chr1	49606985	AG	A	INDEL	1bp_deletion	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	2	B83,B91
typical_cds_rare	Chr1	49606995	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	1	C31
typical_cds_rare	Chr1	49607002	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	1	A6
typical_cds_rare	Chr1	49607106	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	4	A5,B17,B58,C46
lof_cds	Chr1	49607119	TTA	T	INDEL	2bp_deletion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	C40,C59,D10
typical_cds_rare	Chr1	49607119	TTA	T	INDEL	2bp_deletion	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	C40,C59,D10
lof_cds	Chr1	49607121	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	5	B119,B121,B49,C17,C39
typical_cds_rare	Chr1	49607121	AT	A	INDEL	1bp_deletion	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	5	B119,B121,B49,C17,C39
typical_cds_rare	Chr1	49607126	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	B17,C46,C59
typical_cds_rare	Chr1	49607144	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	4	B17,B99,C27,C46
typical_cds_rare	Chr1	49607159	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	4	B112,C40,C59,D10
lof_cds	Chr1	49607180	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	4	B135,C39,C69,C78
typical_cds_rare	Chr1	49607180	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	4	B135,C39,C69,C78
lof_cds	Chr1	49607237	AAC	A	INDEL	2bp_deletion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	51	A15,A16,A2,A23,B101,B103,B108,B111,B115,B117,B118,B129,B13,B131,B132,B15,B26,B32,B39,B43,B47,B68,B71,B75,B77,B81,B91,B94,B96,C14,C15,C23,C26,C30,C36,C38,C40,C41,C44,C49,C56,C59,C60,C62,C74,C75,C76,C87,D1,D5,D8
lof_cds	Chr1	49607242	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	51	A15,A16,A2,A23,B101,B103,B108,B111,B115,B117,B118,B129,B13,B131,B132,B15,B26,B32,B39,B43,B47,B68,B71,B75,B77,B81,B91,B94,B96,C14,C15,C23,C30,C36,C38,C40,C41,C44,C49,C56,C59,C60,C62,C74,C75,C76,C87,D1,D3,D5,D8
lof_cds	Chr1	49607254	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	15	A4,B10,B106,B110,B122,B130,B27,B28,B38,B45,B75,C12,C31,C72,D9
lof_cds	Chr1	49607256	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	15	A4,B10,B106,B110,B122,B130,B27,B28,B38,B45,B75,C12,C31,C72,D9
lof_cds	Chr1	49607285	G	GTC	INDEL	2bp_insertion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	15	A4,B10,B106,B110,B112,B122,B130,B27,B28,B38,B45,B75,C12,C37,D9
typical_cds_rare	Chr1	49607301	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	4	B24,B33,B56,B85
typical_cds_rare	Chr1	49607313	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	B36,B64,C59
typical_cds_rare	Chr1	49607370	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	3	C2,C48,C58
typical_cds_rare	Chr1	49607414	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	2	B102,B99
typical_cds_rare	Chr1	49607454	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	2	B87,C32
typical_cds_rare	Chr1	49607469	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	2	B131,B94
typical_cds_rare	Chr1	49607514	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	1	D11
typical_cds_rare	Chr1	49607573	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	5	B24,B33,B56,B85,B96
typical_cds_rare	Chr1	49607595	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	5	B36,B64,C24,C59,C71
typical_cds_rare	Chr1	49607608	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	2	B63,B83
lof_cds	Chr1	49607677	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	20	A3,A5,B107,B109,B113,B122,B13,B139,B35,B49,B52,B71,B73,B78,B79,B87,C32,C68,C72,D11
lof_cds	Chr1	49607714	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	20	A13,A6,B106,B139,B29,B30,B34,B64,B72,B76,B86,C13,C16,C32,C39,C43,C47,C65,C68,C80
lof_cds	Chr1	49607717	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	20	A13,A6,B106,B139,B29,B30,B34,B64,B72,B76,B86,C13,C16,C32,C39,C43,C47,C65,C68,C80
typical_cds_rare	Chr1	49607755	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	1	C31
typical_cds_rare	Chr1	49607762	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	2	B85,B99
typical_cds_rare	Chr1	49607764	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	1	C16
typical_cds_rare	Chr1	49607768	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	4	A9,B32,B78,C30
typical_cds_rare	Chr1	49607771	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989884	SmilChr01G003077	130989884	rna-XM_057914035.1	5	B24,B33,B56,B85,B96