source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr1	49610852	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	4	B119,B121,C17,C28
lof_cds	Chr1	49610897	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	117	A1,A16,A2,A3,A4,A7,A9,B1,B106,B108,B110,B117,B119,B12,B120,B121,B122,B124,B125,B129,B13,B130,B132,B134,B136,B137,B139,B14,B15,B16,B17,B18,B19,B2,B21,B22,B23,B24,B27,B28,B31,B33,B38,B39,B4,B40,B47,B49,B52,B54,B58,B59,B62,B63,B64,B66,B67,B68,B7,B72,B73,B75,B77,B82,B83,B84,B93,B94,B95,B98,C10,C12,C17,C18,C20,C22,C23,C24,C25,C26,C27,C28,C3,C31,C33,C34,C36,C39,C4,C41,C42,C46,C48,C49,C5,C52,C53,C55,C60,C65,C69,C72,C73,C78,C79,C8,C80,C81,C82,C87,C9,D10,D11,D2,D3,D4,D9
typical_cds_rare	Chr1	49610900	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	2	A7,C48
lof_cds	Chr1	49611062	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	16	A5,B11,B135,B29,B48,B86,C11,C19,C35,C39,C44,C61,C69,C78,D2,D5
lof_cds	Chr1	49611090	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	23	B129,B132,B14,B18,B19,B2,B4,B52,B54,B58,B71,B90,B92,B93,C22,C26,C35,C36,C41,C60,C78,C8,C87
typical_cds_rare	Chr1	49611096	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	5	A8,B44,B79,C43,C71
typical_cds_rare	Chr1	49611152	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	B44
typical_cds_rare	Chr1	49611222	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	3	C10,C18,C25
typical_cds_rare	Chr1	49611247	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	2	B102,B46
typical_cds_rare	Chr1	49611373	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	5	A3,B12,B53,B7,C62
typical_cds_rare	Chr1	49611388	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	4	B64,B69,C56,C75
lof_cds	Chr1	49611618	A	AGT	INDEL	2bp_insertion	frameshift_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	C52
typical_cds_rare	Chr1	49611618	A	AGT	INDEL	2bp_insertion	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	C52
typical_cds_rare	Chr1	49611710	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	B104
lof_cds	Chr1	49611813	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	8	B139,B40,B7,C26,C4,C47,C52,C61
typical_cds_rare	Chr1	49611840	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	3	B130,C33,C58
lof_cds	Chr1	49611927	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	10	B15,B2,B31,B92,C26,C36,C4,C41,C79,C8
lof_cds	Chr1	49612062	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	2	B119,C17
typical_cds_rare	Chr1	49612062	CA	C	INDEL	1bp_deletion	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	2	B119,C17
typical_cds_rare	Chr1	49612094	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	B19
typical_cds_rare	Chr1	49612117	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	B104
typical_cds_rare	Chr1	49612179	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	2	B21,C55
typical_cds_rare	Chr1	49612190	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	3	B95,C48,C73
typical_cds_rare	Chr1	49612219	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	5	A22,C51,C69,C80,D8
typical_cds_rare	Chr1	49612258	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	2	B52,C76
typical_cds_rare	Chr1	49612381	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	2	B117,C65
lof_cds	Chr1	49612382	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	4	B35,B69,C37,C54
typical_cds_rare	Chr1	49612382	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	4	B35,B69,C37,C54
typical_cds_rare	Chr1	49612579	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	B82
typical_cds_rare	Chr1	49612597	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	2	B49,B77
typical_cds_rare	Chr1	49612603	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	3	B23,C30,D3
typical_cds_rare	Chr1	49612627	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	5	A9,B10,C55,C57,D8
typical_cds_rare	Chr1	49612737	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	3	A25,B103,C20
typical_cds_rare	Chr1	49612811	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	4	B103,B18,C87,D10
lof_cds	Chr1	49612814	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	14	B109,B12,B125,B136,B16,B95,C2,C20,C24,C48,C73,C81,C84,D4
lof_cds	Chr1	49612818	TGC	T	INDEL	2bp_deletion	frameshift_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	2	B63,C46
typical_cds_rare	Chr1	49612818	TGC	T	INDEL	2bp_deletion	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	2	B63,C46
lof_cds	Chr1	49613050	G	GAC	INDEL	2bp_insertion	frameshift_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	16	B128,B132,B15,B17,B2,B22,B31,B47,B53,B63,B67,C31,C34,C46,C79,D3
lof_cds	Chr1	49613056	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	141	A1,A10,A11,A18,A2,A22,A23,A24,A25,A3,A4,A5,A7,A8,A9,B1,B10,B101,B106,B107,B108,B109,B111,B112,B115,B117,B12,B120,B121,B122,B125,B126,B128,B132,B134,B135,B136,B137,B138,B139,B140,B15,B16,B17,B19,B2,B20,B21,B22,B23,B24,B25,B27,B28,B30,B31,B33,B35,B36,B38,B39,B4,B40,B45,B47,B48,B49,B53,B54,B60,B63,B64,B65,B66,B67,B7,B73,B74,B75,B76,B77,B81,B84,B87,B88,B89,B94,B95,B96,B98,C10,C11,C13,C17,C18,C20,C23,C25,C27,C28,C3,C31,C33,C34,C39,C4,C42,C45,C48,C49,C5,C50,C51,C52,C54,C57,C58,C61,C64,C65,C66,C70,C72,C73,C74,C79,C8,C80,C81,C82,C84,C86,C9,D10,D11,D3,D4,D6,D7,D8,D9
lof_cds	Chr1	49613057	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	151	A1,A10,A11,A14,A18,A2,A22,A23,A24,A25,A3,A4,A5,A7,A8,A9,B1,B10,B101,B104,B106,B107,B108,B109,B111,B112,B115,B117,B12,B120,B121,B122,B126,B128,B130,B132,B134,B135,B137,B138,B139,B140,B15,B16,B17,B19,B2,B20,B21,B22,B23,B24,B25,B27,B28,B30,B31,B33,B35,B36,B38,B39,B4,B40,B41,B45,B47,B48,B49,B53,B54,B56,B60,B63,B64,B65,B66,B67,B7,B71,B72,B73,B74,B75,B76,B77,B81,B84,B87,B88,B89,B94,B96,B97,B98,C10,C11,C13,C17,C18,C23,C24,C25,C26,C27,C28,C3,C31,C33,C34,C39,C4,C42,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C57,C58,C61,C62,C64,C65,C66,C70,C72,C73,C74,C79,C8,C80,C81,C82,C84,C86,C9,D10,D11,D3,D4,D6,D7,D8,D9
lof_cds	Chr1	49613065	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	D11
typical_cds_rare	Chr1	49613065	TG	T	INDEL	1bp_deletion	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	D11
lof_cds	Chr1	49613085	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	D10
typical_cds_rare	Chr1	49613085	AG	A	INDEL	1bp_deletion	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	D10
typical_cds_rare	Chr1	49613092	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	B82
lof_cds	Chr1	49613106	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	18	A20,B106,B128,B132,B15,B17,B2,B22,B31,B47,B53,B63,B67,C31,C34,C46,C79,D3
lof_cds	Chr1	49613128	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	D10
typical_cds_rare	Chr1	49613128	C	CA	INDEL	1bp_insertion	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	D10
typical_cds_rare	Chr1	49613140	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	2	A6,B100
lof_cds	Chr1	49613149	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	B103
typical_cds_rare	Chr1	49613149	TA	T	INDEL	1bp_deletion	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	B103
lof_cds	Chr1	49613214	CAT	C	INDEL	2bp_deletion	frameshift_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	B6
typical_cds_rare	Chr1	49613214	CAT	C	INDEL	2bp_deletion	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	B6
lof_cds	Chr1	49613269	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	2	B104,C82
typical_cds_rare	Chr1	49613269	T	TG	INDEL	1bp_insertion	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	2	B104,C82
lof_cds	Chr1	49613279	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	161	A1,A10,A13,A14,A16,A18,A2,A20,A22,A23,A24,A25,A4,A7,A8,A9,B1,B10,B101,B104,B105,B106,B107,B108,B109,B110,B111,B112,B117,B119,B120,B121,B122,B125,B126,B128,B130,B132,B134,B135,B136,B137,B138,B139,B140,B15,B16,B17,B2,B20,B21,B22,B23,B25,B27,B30,B31,B33,B36,B38,B39,B4,B40,B41,B47,B48,B49,B50,B53,B56,B58,B6,B61,B62,B63,B64,B65,B66,B67,B68,B7,B70,B71,B73,B75,B76,B77,B8,B81,B82,B83,B84,B87,B88,B89,B93,B94,B95,B96,B97,B98,C10,C11,C12,C13,C15,C18,C2,C20,C24,C25,C26,C27,C28,C3,C31,C33,C34,C39,C4,C42,C45,C46,C47,C48,C49,C5,C51,C52,C53,C54,C55,C57,C58,C61,C62,C64,C65,C69,C70,C72,C73,C74,C76,C79,C8,C80,C81,C82,C84,C85,C86,C9,D1,D10,D2,D3,D6,D7,D8,D9
lof_cds	Chr1	49613356	G	GGA	INDEL	2bp_insertion	frameshift_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	16	A14,A15,A6,B100,B101,B113,B118,B121,B123,B124,B136,B3,B32,B84,C40,C83
typical_cds_rare	Chr1	49613456	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	1	B82
typical_cds_rare	Chr1	49613467	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989890	SmilChr01G003078	130989890	rna-XM_057914047.1	2	B87,C82