source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr1	49617448	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	B104
typical_cds_rare	Chr1	49617482	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	D11
typical_cds_rare	Chr1	49617569	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	B36,D11
typical_cds_rare	Chr1	49617586	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	B33,B53
typical_cds_rare	Chr1	49617661	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	B87,D11
typical_cds_rare	Chr1	49617700	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	B131,B94
typical_cds_rare	Chr1	49617701	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	B13,B83,B90,C15,C57
lof_cds	Chr1	49617738	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	4	A6,B13,C15,C31
typical_cds_rare	Chr1	49617738	TCC	T	INDEL	2bp_deletion	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	4	A6,B13,C15,C31
lof_cds	Chr1	49617745	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	26	A2,A4,B101,B130,B131,B24,B45,B5,B50,B53,B60,B77,C1,C15,C20,C21,C26,C27,C51,C52,C63,C65,C86,D6,D7,D9
lof_cds	Chr1	49617751	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	26	A2,A4,B101,B130,B131,B24,B45,B5,B50,B53,B60,B77,C1,C15,C20,C21,C26,C27,C51,C52,C63,C65,C86,D6,D7,D9
typical_cds_rare	Chr1	49617771	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	B87,D11
typical_cds_rare	Chr1	49617790	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	3	B83,C31,D11
typical_cds_rare	Chr1	49617896	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	C33
typical_cds_rare	Chr1	49617923	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	B87
typical_cds_rare	Chr1	49617926	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	B82
typical_cds_rare	Chr1	49618240	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	B104
lof_cds	Chr1	49618267	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	A6,A8,B113,B38,C55
typical_cds_rare	Chr1	49618267	TA	T	INDEL	1bp_deletion	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	A6,A8,B113,B38,C55
lof_cds	Chr1	49618270	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	A6,A8,B113,B38,C55
typical_cds_rare	Chr1	49618270	CAA	C	INDEL	2bp_deletion	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	A6,A8,B113,B38,C55
lof_cds	Chr1	49618380	ATC	A	INDEL	2bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	8	B134,B18,B50,B68,C17,C19,C7,C74
lof_cds	Chr1	49618383	A	AGT	INDEL	2bp_insertion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	8	B134,B18,B50,B68,C17,C19,C7,C74
lof_cds	Chr1	49618391	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	10	B121,B24,B41,B53,B78,B88,C47,C58,C60,C67
lof_cds	Chr1	49618494	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	25	A11,A13,A6,A8,B102,B107,B113,B129,B17,B54,B56,B63,B73,B78,B90,B99,C18,C2,C5,C55,C58,C60,C67,C68,C71
lof_cds	Chr1	49618499	G	GGT	INDEL	2bp_insertion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	14	B10,B11,B134,B5,B50,B53,B68,B74,C17,C34,C47,C56,C74,D8
lof_cds	Chr1	49618504	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	12	B11,B134,B5,B50,B53,B68,B74,C34,C47,C56,C74,D8
lof_cds	Chr1	49618542	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	B129,B54
typical_cds_rare	Chr1	49618542	TG	T	INDEL	1bp_deletion	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	B129,B54
typical_cds_rare	Chr1	49618544	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	4	B119,B121,C17,C28
lof_cds	Chr1	49618558	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	A8,B45,B73,B78,C47
typical_cds_rare	Chr1	49618558	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	A8,B45,B73,B78,C47
typical_cds_rare	Chr1	49618560	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	A8,B45,B73,B78,C47
typical_cds_rare	Chr1	49618590	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	C55
typical_cds_rare	Chr1	49618592	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	4	B18,B40,C19,C7
typical_cds_rare	Chr1	49618625	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	B40,C19,C25,C7,C75
lof_cds	Chr1	49618779	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	D11
typical_cds_rare	Chr1	49618779	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	D11
typical_cds_rare	Chr1	49618861	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	B51
lof_cds	Chr1	49618869	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	17	A14,A15,A6,B100,B101,B113,B118,B123,B124,B3,B33,B55,B74,B84,C14,C40,C83
typical_cds_rare	Chr1	49618976	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	B82,B87
typical_cds_rare	Chr1	49619094	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	C75
typical_cds_rare	Chr1	49619118	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	C75
lof_cds	Chr1	49619140	TAC	T	INDEL	2bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	4	B5,B86,C16,C18
typical_cds_rare	Chr1	49619140	TAC	T	INDEL	2bp_deletion	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	4	B5,B86,C16,C18
lof_cds	Chr1	49619152	TAG	T	INDEL	2bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	47	A19,A22,A4,B1,B109,B112,B113,B12,B122,B123,B136,B140,B2,B21,B26,B29,B34,B38,B44,B55,B60,B64,B69,B70,B75,B78,B87,B9,B99,C1,C12,C14,C18,C2,C26,C34,C54,C55,C59,C60,C63,C67,C68,C74,C77,D2,D8
typical_cds_rare	Chr1	49619156	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	B106,B78
typical_cds_rare	Chr1	49619172	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	B86,B99
typical_cds_rare	Chr1	49619187	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	B85
typical_cds_rare	Chr1	49619215	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	4	B122,B130,B29,B58
typical_cds_rare	Chr1	49619219	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	B82,C3
typical_cds_rare	Chr1	49619227	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	B26,C40
lof_cds	Chr1	49619251	A	AGG	INDEL	2bp_insertion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	A20,B122,B29,B58,C32
typical_cds_rare	Chr1	49619251	A	AGG	INDEL	2bp_insertion	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	A20,B122,B29,B58,C32
lof_cds	Chr1	49619252	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	A20,B122,B29,B58,C32
typical_cds_rare	Chr1	49619252	CAA	C	INDEL	2bp_deletion	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	A20,B122,B29,B58,C32
typical_cds_rare	Chr1	49619276	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	4	B23,B62,C30,D3
typical_cds_rare	Chr1	49619278	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	3	A1,A18,C57
lof_cds	Chr1	49619310	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	8	A4,B140,B19,C20,C28,C3,C60,C71
lof_cds	Chr1	49619312	ACG	A	INDEL	2bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	8	A4,B140,B19,C20,C28,C3,C63,C71
typical_cds_rare	Chr1	49619366	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	B2,B65,B85,C25,C72
typical_cds_rare	Chr1	49619373	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	B2,B65,B85,C25,C72
typical_cds_rare	Chr1	49619382	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	4	B2,B5,B85,C25
lof_cds	Chr1	49619428	AAC	A	INDEL	2bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	10	A16,B53,B57,B6,B96,B98,C19,C22,C42,C75
lof_cds	Chr1	49619433	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	7	B53,B57,B96,B98,C19,C22,C42
typical_cds_rare	Chr1	49619449	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	B2,C68
typical_cds_rare	Chr1	49619455	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	D11
lof_cds	Chr1	49619479	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	7	B122,B49,B60,B73,C39,C72,C81
typical_cds_rare	Chr1	49619514	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	B60
typical_cds_rare	Chr1	49619563	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	A16,C11
typical_cds_rare	Chr1	49619579	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	A16,C11
lof_cds	Chr1	49619597	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	A16
typical_cds_rare	Chr1	49619597	CA	C	INDEL	1bp_deletion	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	A16
typical_cds_rare	Chr1	49619611	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	B108,B74,B78,C42,C68
typical_cds_rare	Chr1	49619615	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	B108,B74,B78,C42,C68
lof_cds	Chr1	49619656	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	B32
typical_cds_rare	Chr1	49619656	CG	C	INDEL	1bp_deletion	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	B32
typical_cds_rare	Chr1	49619667	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	B23,C53
typical_cds_rare	Chr1	49619678	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	B23,C53
typical_cds_rare	Chr1	49619794	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	B101
typical_cds_rare	Chr1	49619839	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	C5
typical_cds_rare	Chr1	49619862	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	B82
typical_cds_rare	Chr1	49619944	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	B32
lof_cds	Chr1	49620018	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	B6,B76,B80,C13,C67
typical_cds_rare	Chr1	49620018	TC	T	INDEL	1bp_deletion	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	B6,B76,B80,C13,C67
lof_cds	Chr1	49620131	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	17	A13,A9,B101,B103,B106,B108,B40,B60,B93,C10,C16,C19,C33,C47,C53,C55,C64
typical_cds_rare	Chr1	49620214	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	B104,D11
lof_cds	Chr1	49620234	ACC	A	INDEL	2bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	12	A15,A16,B113,B3,B46,B78,B91,C19,C46,C58,C64,C66
typical_cds_rare	Chr1	49620389	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	2	B100,B64
lof_cds	Chr1	49620414	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	10	B100,B122,B55,B80,B91,C22,C28,C63,C79,D9
lof_cds	Chr1	49620415	GAA	G	INDEL	2bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	24	B111,B117,B12,B124,B36,B41,B61,B77,B78,B85,B91,C2,C27,C32,C47,C5,C56,C72,C77,C85,D1,D10,D11,D7
lof_cds	Chr1	49620431	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	10	A15,B124,B136,B36,B41,B85,C2,C27,C56,C85
lof_cds	Chr1	49620447	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	C32
typical_cds_rare	Chr1	49620447	A	AT	INDEL	1bp_insertion	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	C32
lof_cds	Chr1	49620453	G	GTC	INDEL	2bp_insertion	stop_gained,frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	7	A15,B124,B136,B85,C2,C27,C56
typical_cds_rare	Chr1	49620528	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	5	B39,B86,C26,C32,C42
lof_cds	Chr1	49620568	CAG	C	INDEL	2bp_deletion	frameshift_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	C32
typical_cds_rare	Chr1	49620568	CAG	C	INDEL	2bp_deletion	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	1	C32
typical_cds_rare	Chr1	49620570	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989898	SmilChr01G003079	130989898	rna-XM_057914060.1	3	A5,C61,C78