source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr1	49690205	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	A4,B112,B21,B23,C53
typical_cds_rare	Chr1	49690316	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	A1,B33,C10,C18,C25
typical_cds_rare	Chr1	49690333	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	B70
typical_cds_rare	Chr1	49690334	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B104,B123,D4
typical_cds_rare	Chr1	49690338	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	B21,B23,B53,B79,C53
lof_cds	Chr1	49690348	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	75	A11,A19,A21,A23,A8,B1,B104,B110,B112,B115,B117,B124,B125,B126,B13,B132,B133,B140,B15,B29,B32,B35,B37,B41,B43,B45,B49,B5,B50,B55,B56,B6,B62,B68,B69,B71,B73,B76,B77,B88,B92,B94,B95,B96,C1,C15,C19,C2,C22,C3,C31,C33,C34,C4,C40,C49,C5,C52,C54,C60,C63,C65,C67,C72,C76,C78,C80,C81,C85,D10,D11,D3,D4,D6,D7
lof_cds	Chr1	49690350	A	ACT	INDEL	2bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	74	A11,A19,A21,A23,A8,B1,B104,B110,B112,B115,B117,B124,B125,B126,B13,B132,B133,B140,B15,B29,B32,B35,B37,B41,B43,B45,B49,B5,B50,B55,B56,B6,B62,B68,B69,B71,B73,B76,B77,B88,B92,B94,B95,B96,C1,C15,C19,C2,C22,C3,C31,C33,C34,C4,C40,C49,C5,C52,C54,C60,C63,C65,C67,C72,C78,C80,C81,C85,D10,D11,D3,D4,D6,D7
lof_cds	Chr1	49690395	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	88	A1,A11,A13,A19,A21,A23,A4,B1,B104,B110,B115,B117,B124,B125,B126,B129,B13,B132,B136,B140,B15,B23,B29,B3,B32,B33,B35,B37,B38,B39,B41,B43,B45,B49,B5,B50,B54,B55,B56,B6,B60,B64,B68,B69,B71,B73,B76,B8,B88,B91,B92,B94,B95,B96,C1,C14,C15,C16,C19,C2,C3,C30,C31,C33,C34,C39,C4,C40,C47,C49,C5,C50,C54,C57,C60,C63,C65,C67,C7,C72,C78,C80,C81,C83,C85,D10,D11,D7
lof_cds	Chr1	49690398	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	88	A1,A11,A13,A19,A21,A23,A4,B1,B104,B110,B115,B117,B124,B125,B126,B129,B13,B132,B136,B140,B15,B23,B29,B3,B32,B33,B35,B37,B38,B39,B41,B43,B45,B49,B5,B50,B54,B55,B56,B6,B64,B68,B69,B71,B72,B73,B76,B8,B88,B91,B92,B94,B95,B96,C1,C14,C15,C16,C19,C2,C3,C30,C31,C33,C34,C39,C4,C40,C47,C49,C5,C50,C54,C57,C60,C63,C65,C67,C7,C72,C78,C80,C81,C83,C85,D10,D11,D7
lof_cds	Chr1	49690423	GTC	G	INDEL	2bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	A16,A4,B65,C37,C68
typical_cds_rare	Chr1	49690423	GTC	G	INDEL	2bp_deletion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	A16,A4,B65,C37,C68
lof_cds	Chr1	49690426	C	CTG	INDEL	2bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	A16,C37,C68
typical_cds_rare	Chr1	49690426	C	CTG	INDEL	2bp_insertion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	A16,C37,C68
lof_cds	Chr1	49690430	C	CGT	INDEL	2bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	29	A1,B124,B126,B129,B13,B140,B15,B29,B33,B35,B37,B41,B43,B45,B5,B56,B6,B69,B76,B95,B96,C10,C40,C65,C72,C78,D10,D11,D7
lof_cds	Chr1	49690434	T	TAA	INDEL	2bp_insertion	stop_gained,frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	27	A1,B124,B126,B13,B140,B15,B29,B33,B35,B37,B41,B43,B45,B5,B56,B6,B69,B76,B95,B96,C10,C40,C65,C72,D10,D11,D7
typical_cds_rare	Chr1	49690437	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	2	C34,C70
lof_cds	Chr1	49690439	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	C31
typical_cds_rare	Chr1	49690439	T	TA	INDEL	1bp_insertion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	C31
typical_cds_rare	Chr1	49690487	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	4	B111,B70,C31,C50
typical_cds_rare	Chr1	49690564	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	B60
typical_cds_rare	Chr1	49690691	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	B53
typical_cds_rare	Chr1	49690775	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	A25,B69,B80,B99,D7
typical_cds_rare	Chr1	49690779	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	A25,B69,B80,B99,D7
typical_cds_rare	Chr1	49690814	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B81,B92,C37
typical_cds_rare	Chr1	49690825	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B81,B92,C37
lof_cds	Chr1	49690893	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	6	A10,B71,B92,C37,C4,C59
lof_cds	Chr1	49690897	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	C13
typical_cds_rare	Chr1	49690897	A	ACC	INDEL	2bp_insertion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	C13
lof_cds	Chr1	49690898	G	GT	INDEL	1bp_insertion	stop_gained,frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	6	A10,B71,B92,C37,C4,C59
lof_cds	Chr1	49690905	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	2	B43,C4
typical_cds_rare	Chr1	49690905	AG	A	INDEL	1bp_deletion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	2	B43,C4
lof_cds	Chr1	49690907	AGG	A	INDEL	2bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	7	A10,B71,B92,C37,C38,C4,C59
typical_cds_rare	Chr1	49690941	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	2	B92,C73
lof_cds	Chr1	49690960	ACC	A	INDEL	2bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	256	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C38,C39,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
typical_cds_rare	Chr1	49691048	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	B19,B52,B85,C37,D6
typical_cds_rare	Chr1	49691049	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	C31
typical_cds_rare	Chr1	49691050	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	B85
lof_cds	Chr1	49691051	ACG	A	INDEL	2bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B52,B85,D6
typical_cds_rare	Chr1	49691051	ACG	A	INDEL	2bp_deletion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B52,B85,D6
lof_cds	Chr1	49691054	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B52,B85,D6
typical_cds_rare	Chr1	49691054	A	ACC	INDEL	2bp_insertion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B52,B85,D6
typical_cds_rare	Chr1	49691083	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B52,B98,C7
typical_cds_rare	Chr1	49691093	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	2	B52,B98
lof_cds	Chr1	49691129	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B52,B62,B98
typical_cds_rare	Chr1	49691129	TG	T	INDEL	1bp_deletion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B52,B62,B98
typical_cds_rare	Chr1	49691134	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B52,B62,B98
lof_cds	Chr1	49691143	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B52,B62,B98
typical_cds_rare	Chr1	49691143	GA	G	INDEL	1bp_deletion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B52,B62,B98
lof_cds	Chr1	49691203	CAT	C	INDEL	2bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	4	B52,B62,B98,C52
typical_cds_rare	Chr1	49691203	CAT	C	INDEL	2bp_deletion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	4	B52,B62,B98,C52
lof_cds	Chr1	49691232	G	GGT	INDEL	2bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	B37,C10,C35,C68,C71
typical_cds_rare	Chr1	49691232	G	GGT	INDEL	2bp_insertion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	B37,C10,C35,C68,C71
lof_cds	Chr1	49691234	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	B37,C10,C35,C68,C71
typical_cds_rare	Chr1	49691234	CAA	C	INDEL	2bp_deletion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	B37,C10,C35,C68,C71
lof_cds	Chr1	49691243	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	90	A10,A11,A14,A18,A19,A2,A24,A3,A4,A5,A7,A8,A9,B1,B10,B103,B104,B105,B107,B109,B112,B113,B114,B127,B130,B134,B137,B14,B16,B18,B20,B26,B3,B30,B32,B33,B34,B36,B44,B46,B47,B48,B5,B55,B57,B59,B61,B63,B7,B72,B74,B82,B83,B85,B86,B9,B97,C12,C14,C15,C17,C18,C19,C26,C28,C3,C4,C40,C41,C42,C44,C45,C50,C51,C53,C58,C6,C63,C70,C75,C77,C8,C81,C82,C85,C86,C9,D1,D5,D7
lof_cds	Chr1	49691247	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	86	A10,A11,A14,A18,A19,A2,A24,A3,A4,A5,A7,A8,A9,B1,B10,B103,B104,B105,B109,B112,B113,B114,B127,B130,B134,B137,B14,B16,B18,B20,B26,B3,B30,B32,B33,B34,B36,B44,B46,B47,B48,B5,B55,B57,B59,B61,B63,B7,B72,B74,B82,B83,B85,B86,B9,B97,C12,C14,C15,C17,C18,C19,C26,C28,C3,C4,C41,C42,C44,C45,C50,C51,C53,C58,C6,C63,C70,C77,C8,C81,C82,C85,C86,D1,D5,D7
lof_cds	Chr1	49691261	GAC	G	INDEL	2bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	2	B129,B69
typical_cds_rare	Chr1	49691261	GAC	G	INDEL	2bp_deletion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	2	B129,B69
lof_cds	Chr1	49691266	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	23	A16,A2,A25,B105,B11,B117,B139,B21,B3,B42,B47,B66,B95,B98,B99,C15,C38,C47,C48,C56,C57,C73,D9
lof_cds	Chr1	49691306	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	76	A11,A2,A24,A25,A4,A5,A8,B10,B103,B104,B105,B108,B109,B111,B112,B130,B134,B136,B139,B14,B16,B18,B23,B30,B33,B34,B36,B42,B44,B46,B47,B48,B49,B52,B54,B58,B63,B66,B68,B74,B8,B82,B86,B91,B92,B94,B97,C14,C16,C17,C25,C26,C27,C28,C3,C31,C36,C41,C42,C44,C45,C48,C50,C55,C57,C6,C72,C74,C75,C77,C78,C80,C82,C85,C86,D7
lof_cds	Chr1	49691307	A	ATG	INDEL	2bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	74	A11,A2,A24,A25,A4,A5,A8,B10,B103,B104,B105,B108,B109,B111,B112,B130,B134,B136,B139,B14,B16,B18,B23,B30,B33,B34,B36,B42,B44,B46,B47,B48,B49,B52,B54,B58,B63,B66,B68,B74,B8,B82,B86,B91,B92,B94,B97,C14,C16,C17,C25,C26,C27,C28,C3,C31,C36,C41,C42,C45,C50,C55,C57,C6,C72,C74,C75,C77,C78,C80,C82,C85,C86,D7
lof_cds	Chr1	49691356	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	132	A11,A15,A16,A2,A22,A24,A25,A4,A5,A6,A8,B1,B10,B101,B103,B104,B105,B108,B109,B11,B110,B111,B112,B117,B124,B126,B129,B130,B131,B133,B134,B136,B139,B14,B140,B16,B18,B19,B2,B20,B21,B23,B24,B28,B30,B33,B34,B36,B40,B42,B44,B45,B46,B47,B48,B49,B50,B52,B54,B56,B57,B58,B59,B6,B63,B7,B71,B74,B75,B8,B80,B82,B83,B85,B86,B88,B91,B92,B94,B96,B97,B98,C11,C14,C16,C17,C2,C20,C22,C24,C25,C26,C27,C28,C3,C31,C32,C33,C36,C37,C38,C39,C4,C41,C42,C43,C44,C45,C48,C50,C55,C56,C57,C58,C6,C72,C73,C74,C75,C77,C78,C8,C80,C82,C84,C85,C86,D11,D6,D7,D8,D9
lof_cds	Chr1	49691362	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	134	A1,A11,A15,A16,A2,A22,A24,A25,A4,A5,A6,A8,B1,B10,B101,B103,B104,B105,B108,B109,B11,B110,B111,B112,B117,B124,B126,B129,B130,B131,B133,B134,B136,B139,B14,B140,B16,B18,B19,B2,B20,B21,B23,B24,B28,B30,B33,B34,B36,B40,B42,B44,B45,B46,B47,B48,B49,B50,B52,B54,B56,B57,B58,B59,B6,B63,B7,B71,B74,B75,B8,B80,B82,B83,B85,B86,B87,B91,B92,B94,B96,B97,B98,C10,C11,C14,C16,C17,C2,C20,C22,C24,C25,C26,C27,C28,C3,C31,C32,C33,C36,C37,C38,C39,C4,C41,C42,C43,C44,C45,C48,C50,C55,C56,C57,C58,C6,C72,C73,C74,C75,C77,C78,C8,C80,C82,C84,C85,C86,D11,D6,D7,D8,D9
lof_cds	Chr1	49691413	C	CTG	INDEL	2bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	148	A1,A10,A11,A13,A15,A16,A18,A2,A21,A22,A24,A25,A4,A5,A6,A8,B1,B10,B100,B101,B103,B104,B105,B108,B109,B11,B110,B111,B112,B117,B12,B124,B126,B127,B129,B130,B131,B133,B134,B136,B138,B139,B14,B140,B16,B18,B19,B2,B20,B23,B24,B25,B28,B30,B33,B34,B36,B37,B40,B42,B43,B44,B45,B46,B47,B48,B50,B51,B52,B54,B56,B57,B58,B59,B6,B63,B66,B7,B71,B74,B75,B76,B80,B81,B82,B83,B85,B86,B87,B9,B91,B92,B94,B96,B97,B98,B99,C10,C11,C14,C16,C17,C20,C23,C24,C25,C26,C27,C28,C29,C3,C31,C32,C33,C36,C37,C38,C4,C40,C41,C42,C43,C44,C48,C50,C55,C56,C57,C58,C6,C67,C7,C72,C73,C74,C75,C77,C78,C80,C82,C84,C85,C86,D11,D6,D7,D8,D9
lof_cds	Chr1	49691416	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	146	A1,A10,A11,A13,A15,A16,A18,A2,A21,A22,A24,A25,A5,A6,A8,B1,B100,B101,B103,B104,B105,B108,B109,B11,B110,B111,B112,B117,B12,B124,B126,B127,B129,B130,B131,B133,B134,B136,B138,B139,B14,B140,B16,B18,B19,B2,B20,B23,B24,B25,B28,B30,B33,B34,B36,B37,B40,B42,B43,B44,B45,B46,B47,B48,B50,B51,B52,B54,B56,B57,B58,B59,B6,B63,B66,B7,B71,B74,B75,B76,B80,B81,B82,B83,B85,B86,B87,B9,B91,B92,B94,B96,B97,B98,B99,C10,C11,C14,C16,C17,C20,C23,C24,C25,C26,C27,C28,C29,C3,C31,C32,C33,C36,C37,C38,C4,C40,C41,C42,C43,C44,C48,C50,C55,C56,C57,C58,C6,C67,C7,C72,C73,C74,C75,C77,C78,C80,C82,C84,C85,C86,D11,D6,D7,D8,D9
lof_cds	Chr1	49691421	ACT	A	INDEL	2bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	146	A1,A10,A11,A13,A15,A16,A18,A2,A21,A22,A24,A25,A4,A5,A6,A8,B1,B10,B100,B101,B103,B104,B105,B108,B109,B110,B111,B112,B117,B12,B124,B126,B127,B129,B130,B131,B133,B134,B136,B138,B139,B14,B140,B16,B18,B19,B2,B20,B23,B24,B25,B28,B30,B33,B34,B36,B37,B40,B42,B43,B44,B45,B46,B47,B48,B50,B51,B52,B54,B56,B57,B58,B59,B6,B63,B66,B7,B71,B74,B75,B76,B80,B81,B82,B83,B85,B86,B87,B9,B91,B92,B94,B96,B97,B98,B99,C10,C14,C16,C17,C20,C23,C24,C25,C26,C27,C28,C29,C3,C31,C32,C33,C36,C37,C38,C4,C40,C41,C42,C43,C44,C48,C50,C55,C56,C57,C58,C6,C67,C7,C72,C73,C74,C75,C77,C78,C80,C82,C84,C85,C86,D11,D6,D7,D8,D9
lof_cds	Chr1	49691426	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	142	A1,A10,A13,A15,A16,A18,A2,A21,A22,A25,A5,A6,A8,B1,B10,B100,B101,B103,B104,B105,B108,B109,B11,B110,B112,B117,B12,B124,B126,B127,B129,B130,B131,B133,B134,B136,B138,B139,B14,B140,B16,B18,B19,B2,B20,B23,B24,B25,B28,B30,B33,B34,B36,B37,B40,B42,B43,B44,B45,B46,B47,B48,B50,B51,B52,B54,B56,B57,B58,B59,B6,B63,B66,B7,B71,B74,B75,B76,B80,B81,B82,B85,B86,B87,B88,B9,B91,B92,B94,B96,B97,B98,B99,C10,C14,C16,C17,C20,C23,C24,C25,C26,C28,C29,C3,C31,C32,C33,C36,C37,C38,C4,C40,C41,C42,C43,C44,C48,C50,C55,C56,C57,C58,C6,C67,C7,C72,C73,C74,C75,C77,C78,C80,C82,C84,C85,C86,D11,D6,D7,D8,D9
lof_cds	Chr1	49691448	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	16	A11,A7,B10,B102,B120,B13,B16,B3,B38,B99,C15,C21,C59,C62,C71,C76
typical_cds_rare	Chr1	49691450	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	C68
lof_cds	Chr1	49691451	A	AAG	INDEL	2bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	15	A11,A7,B10,B102,B120,B13,B16,B3,B99,C15,C21,C59,C62,C71,C8
lof_cds	Chr1	49691454	A	ATG	INDEL	2bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	12	A11,A7,B102,B13,B16,B99,C15,C21,C59,C62,C71,C8
lof_cds	Chr1	49691455	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	129	A1,A10,A11,A15,A16,A18,A2,A21,A22,A25,A5,A6,A8,B1,B100,B103,B104,B105,B108,B109,B111,B112,B114,B117,B12,B126,B127,B129,B130,B131,B133,B134,B136,B138,B139,B14,B140,B18,B19,B2,B25,B28,B30,B33,B34,B36,B37,B40,B42,B43,B44,B46,B47,B48,B49,B50,B51,B52,B54,B56,B58,B59,B63,B66,B69,B7,B71,B74,B75,B76,B80,B81,B82,B84,B85,B86,B87,B9,B91,B92,B94,B96,B97,B98,B99,C10,C16,C17,C20,C23,C24,C25,C26,C28,C29,C3,C31,C32,C33,C37,C38,C4,C40,C41,C42,C44,C50,C55,C57,C58,C6,C67,C72,C73,C74,C75,C77,C78,C80,C82,C84,C85,C86,C87,D1,D11,D6,D7,D9
lof_cds	Chr1	49691457	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	131	A1,A10,A11,A15,A16,A18,A2,A21,A22,A25,A5,A6,A8,B1,B100,B103,B104,B105,B108,B109,B111,B112,B114,B117,B12,B126,B127,B129,B130,B131,B133,B134,B136,B138,B139,B14,B140,B16,B18,B19,B2,B25,B28,B30,B33,B34,B36,B37,B40,B42,B43,B44,B46,B47,B48,B49,B50,B51,B52,B54,B56,B58,B59,B63,B66,B69,B7,B71,B74,B75,B76,B80,B81,B82,B84,B85,B86,B87,B9,B91,B92,B94,B96,B97,B98,B99,C10,C16,C17,C20,C23,C24,C25,C26,C28,C29,C3,C31,C32,C33,C37,C38,C4,C40,C41,C42,C44,C50,C55,C57,C58,C6,C67,C72,C73,C74,C75,C77,C78,C80,C82,C84,C85,C86,C87,D1,D11,D2,D6,D7,D9
lof_cds	Chr1	49691474	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	A11,B102,B99,C15,C59
typical_cds_rare	Chr1	49691474	TGA	T	INDEL	2bp_deletion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	A11,B102,B99,C15,C59
lof_cds	Chr1	49691477	A	ACT	INDEL	2bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B102,C15,C59
typical_cds_rare	Chr1	49691477	A	ACT	INDEL	2bp_insertion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B102,C15,C59
typical_cds_rare	Chr1	49691479	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	A11,B102,B99,C15,C59
typical_cds_rare	Chr1	49691499	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	C17
typical_cds_rare	Chr1	49691521	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	2	B29,C17
typical_cds_rare	Chr1	49691553	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	2	B104,D11
lof_cds	Chr1	49691610	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	B104
typical_cds_rare	Chr1	49691610	A	AG	INDEL	1bp_insertion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	B104
lof_cds	Chr1	49691824	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	9	A4,B112,B137,B21,B23,B53,B79,C53,C55
typical_cds_rare	Chr1	49691861	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	2	B47,D3
typical_cds_rare	Chr1	49691863	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B45,B47,D3
typical_cds_rare	Chr1	49691883	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	4	B45,B47,C69,D3
lof_cds	Chr1	49691888	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	4	B45,B47,C69,D3
typical_cds_rare	Chr1	49691888	T	TC	INDEL	1bp_insertion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	4	B45,B47,C69,D3
lof_cds	Chr1	49691892	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	4	B45,B47,C69,D3
typical_cds_rare	Chr1	49691892	CA	C	INDEL	1bp_deletion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	4	B45,B47,C69,D3
typical_cds_rare	Chr1	49691895	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	B45,B47,C26,C69,D3
typical_cds_rare	Chr1	49692139	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	4	C57,C58,D3,D6
lof_cds	Chr1	49692216	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B104,C57,C77
typical_cds_rare	Chr1	49692216	T	TG	INDEL	1bp_insertion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B104,C57,C77
lof_cds	Chr1	49692218	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B104,C57,C77
typical_cds_rare	Chr1	49692218	A	AG	INDEL	1bp_insertion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B104,C57,C77
typical_cds_rare	Chr1	49692224	AT	*	INDEL	1bp_deletion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B104,C57,C77
lof_cds	Chr1	49692228	A	ATC	INDEL	2bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	A5,B104,C41,C57,C77
typical_cds_rare	Chr1	49692228	A	ATC	INDEL	2bp_insertion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	A5,B104,C41,C57,C77
lof_cds	Chr1	49692233	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B104,C57,C77
typical_cds_rare	Chr1	49692233	A	ACC	INDEL	2bp_insertion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B104,C57,C77
typical_cds_rare	Chr1	49692236	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	3	B104,C57,C77
typical_cds_rare	Chr1	49692243	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	A5,B104,C41,C57,C77
lof_cds	Chr1	49692273	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	44	A13,A19,A22,B10,B114,B115,B13,B136,B137,B138,B18,B20,B25,B26,B36,B41,B47,B5,B54,B6,B62,B7,B83,B85,B86,B87,C12,C13,C21,C32,C39,C4,C40,C46,C47,C5,C68,C72,C76,C78,C8,D10,D2,D9
lof_cds	Chr1	49692276	TAA	T	INDEL	2bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	58	A13,A19,A22,B10,B114,B115,B128,B13,B136,B137,B138,B18,B20,B22,B25,B26,B36,B38,B41,B47,B5,B54,B6,B60,B62,B7,B78,B83,B85,B86,B87,C12,C13,C21,C23,C28,C32,C35,C39,C4,C40,C47,C48,C5,C51,C60,C68,C72,C76,C78,C79,C8,C82,C85,D10,D2,D4,D9
lof_cds	Chr1	49692281	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	14	B128,B22,B38,B47,B60,C28,C35,C48,C51,C60,C79,C82,C85,D4
lof_cds	Chr1	49692284	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	11	A19,B20,B26,B41,B6,B83,C32,C4,C40,C72,C85
lof_cds	Chr1	49692296	T	TTC	INDEL	2bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	29	A13,A22,B10,B115,B13,B136,B137,B138,B25,B36,B5,B62,B7,B85,B86,B87,C12,C13,C21,C39,C47,C5,C68,C76,C78,C8,D10,D2,D9
lof_cds	Chr1	49692305	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	33	A13,A22,B10,B115,B13,B136,B137,B138,B15,B25,B26,B36,B41,B5,B62,B7,B85,B86,B87,C12,C13,C21,C39,C47,C5,C68,C76,C78,C8,C85,D10,D2,D9
lof_cds	Chr1	49692320	T	TA	INDEL	1bp_insertion	stop_gained,frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	22	A13,B10,B115,B13,B137,B25,B26,B36,B41,B62,B86,B87,C12,C13,C21,C47,C68,C8,C85,D10,D2,D9
lof_cds	Chr1	49692324	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	20	A13,B115,B13,B137,B26,B3,B36,B41,B62,B86,B87,C13,C21,C47,C68,C8,C85,D10,D2,D9
lof_cds	Chr1	49692326	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	19	A13,B115,B13,B26,B3,B36,B41,B62,B87,C13,C21,C4,C47,C68,C8,C85,D10,D2,D9
lof_cds	Chr1	49692327	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	B114,B22,B32,B38,C85
typical_cds_rare	Chr1	49692327	CA	C	INDEL	1bp_deletion	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	B114,B22,B32,B38,C85
lof_cds	Chr1	49692331	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	19	A13,B115,B13,B26,B3,B36,B41,B87,C13,C21,C39,C4,C47,C68,C8,C85,D10,D2,D9
typical_cds_rare	Chr1	49692340	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	5	B22,B32,B38,C39,C47
typical_cds_rare	Chr1	49692588	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	C31
typical_cds_rare	Chr1	49692860	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	B129
typical_cds_rare	Chr1	49692944	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	C22
typical_cds_rare	Chr1	49692967	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	C60
typical_cds_rare	Chr1	49693018	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130989933	SmilChr01G003085	130989933	rna-XM_057914110.1	1	B82