source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	49717952	T	TCG	INDEL	2bp_insertion	frameshift_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	11	A3,B1,B10,B115,B133,B44,B50,B62,B77,B84,C62
lof_cds	Chr1	49717954	G	GTC	INDEL	2bp_insertion	stop_gained,frameshift_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	11	A3,B1,B10,B115,B133,B44,B50,B62,B77,B84,C62
lof_cds	Chr1	49718084	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	130	A1,A11,A13,A14,A15,A19,A20,A21,A22,A23,A24,A6,A7,B102,B103,B104,B108,B111,B112,B113,B114,B118,B119,B12,B121,B122,B123,B124,B126,B130,B133,B134,B138,B14,B140,B15,B16,B17,B18,B2,B21,B22,B26,B28,B3,B30,B33,B35,B36,B37,B38,B39,B4,B41,B47,B49,B5,B53,B54,B55,B58,B59,B60,B61,B63,B64,B65,B67,B68,B69,B73,B74,B75,B78,B79,B83,B84,B87,B88,B89,B9,B90,B92,B95,B97,C10,C12,C14,C17,C19,C20,C22,C27,C3,C31,C32,C35,C36,C40,C42,C44,C46,C5,C50,C54,C59,C60,C64,C65,C68,C72,C73,C74,C75,C77,C79,C8,C80,C82,C83,C85,C87,C9,D1,D11,D4,D6,D7,D8,D9
typical_cds_rare	Chr1	49718090	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	D10
typical_cds_rare	Chr1	49718103	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	3	B102,B43,B71
lof_cds	Chr1	49718173	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	4	A5,C2,C61,C78
typical_cds_rare	Chr1	49718173	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	4	A5,C2,C61,C78
typical_cds_rare	Chr1	49718182	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	5	B2,B23,B8,C57,C65
typical_cds_rare	Chr1	49718218	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	B8,C57
lof_cds	Chr1	49718247	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	4	A5,C2,C61,C78
typical_cds_rare	Chr1	49718247	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	4	A5,C2,C61,C78
typical_cds_rare	Chr1	49718335	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	D10
typical_cds_rare	Chr1	49718430	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	C41
typical_cds_rare	Chr1	49718462	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	B8,C57
typical_cds_rare	Chr1	49718474	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	B55
typical_cds_rare	Chr1	49718707	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	B77
typical_cds_rare	Chr1	49718726	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	B117,C65
typical_cds_rare	Chr1	49718776	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	B8,C57
lof_cds	Chr1	49718796	G	GTT	INDEL	2bp_insertion	frameshift_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	B1
typical_cds_rare	Chr1	49718796	G	GTT	INDEL	2bp_insertion	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	B1
typical_cds_rare	Chr1	49718801	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	B1
lof_cds	Chr1	49718867	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	B104
typical_cds_rare	Chr1	49718867	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	B104
lof_cds	Chr1	49718884	T	TCC	INDEL	2bp_insertion	frameshift_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	259	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
typical_cds_rare	Chr1	49718982	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	3	A5,C2,C61
lof_cds	Chr1	49719099	C	CAA	INDEL	2bp_insertion	frameshift_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	C2,C61
typical_cds_rare	Chr1	49719099	C	CAA	INDEL	2bp_insertion	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	C2,C61
typical_cds_rare	Chr1	49719155	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	B117,C65
typical_cds_rare	Chr1	49719252	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	B107
lof_cds	Chr1	49719304	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	C57
typical_cds_rare	Chr1	49719304	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	C57
typical_cds_rare	Chr1	49719335	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	B104
lof_cds	Chr1	49719406	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	A24
typical_cds_rare	Chr1	49719406	C	CA	INDEL	1bp_insertion	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	A24
lof_cds	Chr1	49719407	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	3	B60,C35,C74
typical_cds_rare	Chr1	49719407	A	AG	INDEL	1bp_insertion	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	3	B60,C35,C74
lof_cds	Chr1	49719440	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	A24
typical_cds_rare	Chr1	49719440	G	GC	INDEL	1bp_insertion	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	A24
typical_cds_rare	Chr1	49719458	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	4	A10,B24,C58,C75
typical_cds_rare	Chr1	49719474	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	4	A5,C2,C61,C78
typical_cds_rare	Chr1	49719488	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	B121,C34
typical_cds_rare	Chr1	49719528	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	4	A18,B100,C27,C62
typical_cds_rare	Chr1	49719536	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	5	A18,B100,B99,C27,C62
typical_cds_rare	Chr1	49719555	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	D10
typical_cds_rare	Chr1	49719562	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	5	A18,B10,B100,B99,C9
typical_cds_rare	Chr1	49719565	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	5	A18,B10,B100,B99,C9
typical_cds_rare	Chr1	49719575	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	B140
typical_cds_rare	Chr1	49719637	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	4	A22,A5,B35,B96
typical_cds_rare	Chr1	49719674	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	4	A22,A5,B104,B96
typical_cds_rare	Chr1	49719683	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	B105,B75
lof_cds	Chr1	49719692	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	B104,B96
typical_cds_rare	Chr1	49719692	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	B104,B96
lof_cds	Chr1	49719720	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	C60
typical_cds_rare	Chr1	49719720	G	GA	INDEL	1bp_insertion	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	C60
lof_cds	Chr1	49719758	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	B124,B20
typical_cds_rare	Chr1	49719758	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	B124,B20
typical_cds_rare	Chr1	49719868	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	B104
lof_cds	Chr1	49719883	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	C60,D11
typical_cds_rare	Chr1	49719883	TTC	T	INDEL	2bp_deletion	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	C60,D11
lof_cds	Chr1	49719887	C	CAG	INDEL	2bp_insertion	frameshift_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	C60,D11
typical_cds_rare	Chr1	49719887	C	CAG	INDEL	2bp_insertion	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	C60,D11
typical_cds_rare	Chr1	49719899	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	C60,D11
typical_cds_rare	Chr1	49720118	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	3	B36,C41,C44
typical_cds_rare	Chr1	49720128	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	4	B117,B42,B71,C55
typical_cds_rare	Chr1	49720133	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	2	B127,B70
typical_cds_rare	Chr1	49720134	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	3	B117,C2,C61
typical_cds_rare	Chr1	49720234	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009347	SmilChr01G003090	131009347	rna-XM_057936647.1	1	B139