source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	49780405	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	2	B25,B93
typical_cds_rare	Chr1	49780405	C	CA	INDEL	1bp_insertion	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	2	B25,B93
typical_cds_rare	Chr1	49780579	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	2	C2,D11
typical_cds_rare	Chr1	49780757	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	1	C3
typical_cds_rare	Chr1	49780824	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	2	B109,D4
typical_cds_rare	Chr1	49780971	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	2	B35,C48
typical_cds_rare	Chr1	49781068	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	3	B7,B79,C45
typical_cds_rare	Chr1	49781302	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	1	B36
typical_cds_rare	Chr1	49781309	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	1	D10
lof_cds	Chr1	49781333	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	1	C74
typical_cds_rare	Chr1	49781333	GA	G	INDEL	1bp_deletion	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	1	C74
typical_cds_rare	Chr1	49781420	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	2	B36,C3
typical_cds_rare	Chr1	49781763	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	1	B31
typical_cds_rare	Chr1	49781786	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	5	B13,B19,B61,B77,B8
lof_cds	Chr1	49781844	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	80	A16,A18,A2,A20,A22,A5,A7,A8,A9,B101,B102,B105,B106,B109,B11,B110,B115,B117,B123,B124,B127,B134,B136,B139,B16,B19,B20,B22,B24,B35,B40,B44,B48,B54,B58,B62,B64,B65,B67,B70,B74,B81,B82,B85,B98,B99,C1,C11,C12,C2,C21,C23,C24,C3,C30,C32,C33,C34,C35,C40,C48,C49,C5,C52,C53,C6,C60,C61,C62,C64,C68,C72,C74,C76,C79,C82,D1,D2,D6,D8
typical_cds_rare	Chr1	49781854	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	5	B104,B112,B122,B60,C9
typical_cds_rare	Chr1	49781859	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	1	B99
lof_cds	Chr1	49781863	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	104	A14,A16,A19,A2,A23,A24,A3,A4,A6,A7,A9,B1,B10,B101,B105,B107,B111,B115,B122,B124,B128,B130,B131,B132,B137,B139,B14,B17,B18,B20,B21,B23,B28,B3,B36,B37,B42,B43,B48,B49,B5,B50,B51,B52,B55,B56,B57,B6,B61,B64,B65,B69,B73,B75,B77,B78,B8,B81,B87,B90,B91,B93,B94,B95,B96,C1,C14,C15,C16,C17,C19,C22,C23,C25,C26,C4,C40,C43,C44,C49,C52,C53,C55,C66,C67,C7,C70,C71,C72,C73,C75,C77,C78,C80,C81,C84,C86,C87,D1,D10,D4,D5,D6,D9
lof_cds	Chr1	49781873	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	111	A14,A16,A19,A2,A23,A24,A3,A4,A6,A7,A9,B1,B10,B101,B105,B107,B111,B115,B122,B124,B128,B130,B131,B132,B134,B137,B139,B14,B15,B17,B18,B20,B21,B23,B28,B3,B36,B37,B42,B43,B48,B49,B5,B50,B51,B52,B55,B56,B57,B6,B61,B64,B65,B69,B73,B75,B77,B78,B8,B81,B87,B90,B91,B93,B94,B95,B96,C1,C14,C15,C16,C17,C19,C23,C25,C26,C32,C4,C40,C41,C43,C44,C46,C47,C49,C5,C52,C53,C55,C61,C66,C67,C7,C70,C71,C72,C73,C75,C77,C78,C80,C81,C84,C86,C87,D1,D10,D4,D5,D6,D9
lof_cds	Chr1	49781891	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	7	B111,B140,B50,C1,C29,C49,C50
typical_cds_rare	Chr1	49781925	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	4	B108,B56,B96,D4
typical_cds_rare	Chr1	49781936	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	5	B104,B112,B122,B27,C9
lof_cds	Chr1	49781944	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	7	B101,B12,B52,B55,D5,D6,D9
lof_cds	Chr1	49781945	A	AAC	INDEL	2bp_insertion	frameshift_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	200	A1,A11,A14,A15,A16,A18,A19,A2,A20,A23,A24,A3,A4,A6,A7,A9,B1,B10,B102,B105,B107,B108,B109,B11,B111,B112,B113,B114,B115,B117,B119,B120,B122,B123,B124,B125,B126,B127,B128,B130,B131,B132,B133,B134,B135,B137,B138,B139,B14,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B26,B27,B28,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B4,B40,B41,B42,B43,B45,B47,B48,B49,B5,B50,B51,B52,B54,B56,B57,B58,B59,B6,B60,B61,B63,B64,B65,B66,B67,B69,B7,B70,B72,B73,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B85,B87,B88,B89,B90,B91,B92,B93,B94,B95,B96,B97,B98,C1,C10,C13,C14,C15,C16,C17,C19,C20,C22,C23,C24,C25,C26,C28,C29,C30,C32,C33,C34,C35,C36,C37,C38,C4,C40,C41,C43,C44,C45,C46,C47,C48,C49,C5,C50,C52,C53,C54,C55,C56,C57,C6,C60,C61,C64,C66,C67,C69,C7,C70,C71,C72,C73,C74,C75,C77,C78,C80,C81,C84,C85,C86,C87,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8
lof_cds	Chr1	49781956	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	202	A1,A11,A14,A15,A16,A18,A19,A2,A20,A23,A24,A3,A4,A6,A7,A9,B1,B10,B101,B102,B105,B107,B108,B109,B11,B111,B112,B114,B115,B117,B119,B12,B120,B122,B123,B124,B125,B126,B127,B128,B130,B131,B132,B133,B134,B135,B137,B138,B139,B14,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B26,B27,B28,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B42,B43,B45,B48,B49,B5,B50,B51,B52,B54,B55,B56,B57,B58,B59,B6,B60,B61,B63,B64,B65,B66,B67,B69,B7,B70,B72,B73,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B85,B87,B88,B89,B90,B91,B92,B93,B94,B95,B96,B97,B98,C1,C10,C13,C14,C15,C16,C17,C19,C20,C22,C23,C24,C25,C26,C28,C29,C30,C32,C33,C34,C35,C36,C37,C38,C4,C40,C41,C43,C44,C45,C46,C47,C48,C49,C5,C50,C52,C53,C54,C55,C56,C57,C6,C60,C61,C64,C66,C67,C69,C7,C70,C71,C72,C73,C74,C75,C77,C78,C80,C81,C84,C85,C86,C87,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
typical_cds_rare	Chr1	49781986	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	2	A18,B126
lof_cds	Chr1	49781990	GAC	G	INDEL	2bp_deletion	frameshift_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	200	A1,A11,A14,A15,A16,A18,A19,A2,A20,A23,A24,A3,A4,A6,A7,A9,B1,B10,B101,B102,B105,B107,B108,B11,B111,B112,B114,B115,B117,B119,B12,B120,B122,B124,B125,B126,B127,B128,B130,B131,B132,B133,B134,B135,B137,B138,B139,B14,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B26,B27,B28,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B42,B43,B45,B48,B49,B5,B50,B51,B52,B54,B55,B56,B57,B58,B59,B6,B60,B61,B64,B65,B66,B67,B69,B7,B70,B72,B73,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B85,B87,B88,B89,B90,B91,B92,B93,B94,B95,B96,B97,B98,C1,C10,C11,C13,C14,C15,C16,C17,C19,C20,C22,C23,C24,C25,C26,C28,C29,C30,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C43,C44,C45,C46,C47,C48,C49,C5,C50,C52,C53,C54,C55,C57,C6,C60,C61,C64,C65,C66,C67,C69,C7,C70,C71,C72,C73,C74,C75,C77,C78,C80,C81,C84,C86,C87,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
typical_cds_rare	Chr1	49782015	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	3	B10,B119,B23
lof_cds	Chr1	49782075	G	GTA	INDEL	2bp_insertion	frameshift_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	77	A1,A10,A11,A14,A15,A20,A25,A4,B10,B100,B102,B103,B104,B109,B111,B112,B113,B119,B122,B125,B128,B13,B132,B133,B137,B14,B140,B16,B17,B25,B26,B27,B28,B29,B31,B34,B35,B47,B48,B5,B53,B58,B63,B64,B68,B69,B7,B86,B88,B90,B92,B93,B97,C12,C14,C18,C21,C30,C34,C35,C38,C43,C45,C5,C51,C54,C56,C6,C65,C72,C75,C8,C83,C85,C9,D11,D7
typical_cds_rare	Chr1	49782164	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	2	B104,B122
typical_cds_rare	Chr1	49782194	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	2	B65,D6
lof_cds	Chr1	49782217	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	259	A1,A10,A11,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
typical_cds_rare	Chr1	49782225	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	4	A7,B102,B93,B99
typical_cds_rare	Chr1	49782252	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	5	B10,B119,B23,B28,C38
typical_cds_rare	Chr1	49782259	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	3	B127,B68,B97
typical_cds_rare	Chr1	49782342	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	2	B135,B31
typical_cds_rare	Chr1	49782351	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	3	B78,C2,D7
lof_cds	Chr1	49782355	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	17	A14,A15,B12,B135,B138,B14,B44,B46,B82,B84,C1,C10,C29,C5,C64,C68,C70
typical_cds_rare	Chr1	49782370	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	3	A10,B24,C58
typical_cds_rare	Chr1	49782385	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	4	B65,C27,D10,D6
lof_cds	Chr1	49782399	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	11	A6,B11,B65,B90,B92,C27,C39,D10,D11,D5,D6
typical_cds_rare	Chr1	49782409	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	1	B104
typical_cds_rare	Chr1	49782410	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	2	B50,B99
typical_cds_rare	Chr1	49782448	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	2	B34,C25
lof_cds	Chr1	49782450	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	221	A1,A10,A11,A14,A15,A16,A18,A19,A2,A20,A21,A23,A24,A25,A3,A4,A5,A6,A7,A9,B1,B10,B101,B102,B104,B105,B107,B108,B109,B11,B110,B111,B112,B113,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B13,B130,B131,B132,B133,B134,B135,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B20,B21,B22,B23,B26,B27,B28,B3,B30,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B45,B47,B48,B49,B5,B50,B51,B52,B54,B55,B56,B57,B58,B59,B6,B60,B61,B63,B64,B65,B66,B67,B68,B7,B70,B72,B73,B74,B75,B76,B77,B78,B79,B80,B81,B82,B83,B85,B87,B88,B89,B90,B91,B92,B93,B94,B95,B96,B97,C1,C10,C11,C13,C14,C15,C16,C17,C19,C20,C22,C23,C24,C25,C26,C27,C28,C29,C30,C32,C33,C34,C35,C36,C38,C4,C40,C41,C43,C44,C45,C46,C47,C48,C49,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
typical_cds_rare	Chr1	49782526	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	3	A10,B126,C35
lof_cds	Chr1	49782557	ACC	A	INDEL	2bp_deletion	frameshift_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	2	B65,D6
typical_cds_rare	Chr1	49782557	ACC	A	INDEL	2bp_deletion	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	2	B65,D6
typical_cds_rare	Chr1	49782585	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	4	B119,B23,B28,C38
typical_cds_rare	Chr1	49782589	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	3	B11,C39,C52
lof_cds	Chr1	49782651	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	2	B101,C68
typical_cds_rare	Chr1	49782651	T	TA	INDEL	1bp_insertion	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	2	B101,C68
typical_cds_rare	Chr1	49782657	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	4	A4,B10,B110,B77
typical_cds_rare	Chr1	49782761	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	2	B25,B93
typical_cds_rare	Chr1	49782902	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	1	D10
typical_cds_rare	Chr1	49783060	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	1	C52
typical_cds_rare	Chr1	49783073	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	4	B78,C2,D11,D7
typical_cds_rare	Chr1	49783180	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	3	B78,C2,D7
typical_cds_rare	Chr1	49783359	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990016	SmilChr01G003096	130990016	rna-XM_057914215.1	1	B70