source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr1	49912940	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	C3
lof_cds	Chr1	49912973	A	AAT	INDEL	2bp_insertion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	C3
typical_cds_rare	Chr1	49912973	A	AAT	INDEL	2bp_insertion	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	C3
lof_cds	Chr1	49912976	GCA	G	INDEL	2bp_deletion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	C3
typical_cds_rare	Chr1	49912976	GCA	G	INDEL	2bp_deletion	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	C3
typical_cds_rare	Chr1	49912993	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	3	A5,C61,C78
lof_cds	Chr1	49913001	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	114	A1,A11,A13,A14,A20,A23,A6,B1,B102,B104,B108,B111,B112,B114,B117,B118,B119,B12,B121,B123,B125,B126,B128,B129,B132,B15,B16,B17,B18,B19,B2,B22,B28,B3,B30,B31,B33,B35,B36,B37,B42,B43,B47,B5,B52,B53,B54,B55,B56,B58,B60,B63,B66,B67,B68,B69,B70,B71,B72,B78,B80,B84,B86,B90,B91,B92,B93,B94,B96,B99,C10,C14,C17,C19,C2,C24,C27,C28,C34,C35,C38,C4,C44,C46,C48,C5,C54,C55,C6,C60,C63,C65,C67,C7,C70,C71,C74,C75,C77,C78,C79,C8,C80,C82,C83,C84,C85,C87,D1,D11,D2,D3,D5,D7
lof_cds	Chr1	49947228	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	2	B89,D10
typical_cds_rare	Chr1	49947228	TG	T	INDEL	1bp_deletion	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	2	B89,D10
lof_cds	Chr1	49947231	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	2	B89,D10
typical_cds_rare	Chr1	49947231	TG	T	INDEL	1bp_deletion	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	2	B89,D10
lof_cds	Chr1	49947431	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	21	A13,A22,A9,B136,B138,B31,B54,B58,B6,B73,B88,B89,C11,C18,C43,C49,C51,C69,C80,C9,D8
typical_cds_rare	Chr1	49947639	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	2	A3,C62
typical_cds_rare	Chr1	49947651	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	5	A3,B20,B47,B58,C62
lof_cds	Chr1	49947712	GCA	G	INDEL	2bp_deletion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	C86
typical_cds_rare	Chr1	49947712	GCA	G	INDEL	2bp_deletion	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	C86
typical_cds_rare	Chr1	49947715	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	C3
lof_cds	Chr1	49947718	G	GGA	INDEL	2bp_insertion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	C86
typical_cds_rare	Chr1	49947718	G	GGA	INDEL	2bp_insertion	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	C86
typical_cds_rare	Chr1	49947741	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	C3
typical_cds_rare	Chr1	49947760	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	C3
typical_cds_rare	Chr1	49947907	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	4	B111,B97,C50,C86
typical_cds_rare	Chr1	49947916	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	4	A21,B103,C60,D6
typical_cds_rare	Chr1	49948072	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	3	B1,C60,D6
typical_cds_rare	Chr1	49948305	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	3	A21,C60,D6
typical_cds_rare	Chr1	49948553	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	3	A1,B3,B84
typical_cds_rare	Chr1	49948554	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	C77
typical_cds_rare	Chr1	49948685	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	4	A1,B3,B33,C75
typical_cds_rare	Chr1	49948719	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	3	A1,B33,C75
lof_cds	Chr1	49948939	TGG	T	INDEL	2bp_deletion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	17	A1,A14,A6,B104,B112,B12,B3,B33,B35,B84,C10,C14,C38,C48,C75,C83,D5
lof_cds	Chr1	49949005	AAT	A	INDEL	2bp_deletion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	91	A1,A10,A16,A19,A21,A25,A5,A9,B1,B100,B101,B106,B11,B110,B113,B114,B115,B119,B120,B122,B124,B131,B139,B140,B2,B20,B21,B23,B28,B29,B40,B41,B45,B46,B50,B53,B55,B56,B62,B64,B65,B67,B7,B71,B72,B73,B77,B78,B8,B85,B9,B90,B92,B94,B96,B98,B99,C11,C14,C15,C17,C2,C26,C30,C36,C38,C39,C4,C40,C41,C44,C46,C47,C48,C49,C51,C53,C58,C61,C62,C63,C64,C66,C67,C69,C7,C74,C81,D11,D5,D7
typical_cds_rare	Chr1	49949008	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	2	B35,C48
lof_cds	Chr1	49949016	T	TTG	INDEL	2bp_insertion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	15	B104,B19,B2,B30,B33,B42,B43,B52,B54,B71,B91,C4,C54,C55,C78
lof_cds	Chr1	49949021	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	136	A10,A11,A13,A15,A19,A20,A21,A22,A4,A5,A6,A7,A8,A9,B10,B101,B103,B105,B106,B107,B109,B11,B110,B112,B122,B124,B125,B126,B129,B13,B132,B134,B136,B137,B140,B16,B17,B18,B20,B21,B22,B24,B26,B3,B30,B31,B32,B34,B35,B36,B38,B39,B4,B40,B41,B45,B46,B47,B49,B50,B51,B52,B54,B57,B58,B59,B6,B61,B63,B64,B65,B68,B69,B73,B75,B77,B81,B82,B83,B85,B87,B88,B89,B9,B95,C1,C10,C11,C12,C13,C15,C18,C19,C21,C22,C23,C24,C25,C29,C31,C33,C35,C36,C37,C42,C43,C45,C49,C5,C51,C55,C56,C58,C59,C6,C60,C61,C64,C65,C66,C69,C72,C73,C75,C78,C8,C80,C81,C82,C83,C85,C9,D4,D6,D8,D9
lof_cds	Chr1	49949069	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	81	A1,A10,A19,A21,A24,A25,A5,A9,B1,B100,B106,B11,B110,B113,B115,B119,B120,B122,B124,B131,B139,B140,B20,B21,B23,B28,B29,B36,B40,B41,B45,B46,B50,B55,B56,B62,B64,B65,B7,B70,B73,B74,B77,B78,B85,B9,B92,B96,B97,B98,B99,C11,C14,C15,C17,C2,C26,C30,C36,C38,C39,C40,C41,C48,C49,C50,C51,C53,C58,C61,C62,C63,C64,C66,C67,C69,C7,C74,C81,D5,D7
lof_cds	Chr1	49949081	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	10	A14,A6,B104,B112,B12,B33,C38,C48,C83,D5
lof_cds	Chr1	49949089	T	TCG	INDEL	2bp_insertion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	29	A13,A20,B125,B128,B132,B15,B16,B17,B22,B31,B47,B63,B67,B79,B86,B90,B92,C19,C34,C44,C46,C47,C54,C60,C65,C76,D1,D2,D3
typical_cds_rare	Chr1	49949134	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	4	B126,C3,C6,C87
lof_cds	Chr1	49949136	A	AT	INDEL	1bp_insertion	stop_gained,frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	6	A14,B112,B12,C38,C48,D5
lof_cds	Chr1	49949141	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	6	A14,B112,B12,C38,C48,D5
typical_cds_rare	Chr1	49949169	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	4	A14,B112,C38,C48
lof_cds	Chr1	49949177	G	GGT	INDEL	2bp_insertion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	13	B1,B104,B19,B2,B30,B33,B52,B54,B91,C4,C54,C55,C78
lof_cds	Chr1	49949180	GTT	G	INDEL	2bp_deletion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	13	B1,B104,B19,B2,B30,B33,B52,B54,B91,C4,C54,C55,C78
lof_cds	Chr1	49949189	C	CTA	INDEL	2bp_insertion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	153	A10,A11,A13,A14,A15,A18,A19,A20,A21,A22,A23,A4,A5,A7,A8,A9,B10,B101,B102,B103,B105,B106,B107,B108,B109,B11,B110,B117,B122,B123,B124,B125,B126,B129,B13,B130,B132,B133,B134,B136,B137,B138,B140,B16,B17,B18,B20,B21,B22,B24,B26,B27,B30,B31,B32,B34,B36,B38,B39,B4,B40,B41,B45,B46,B47,B49,B50,B51,B52,B54,B57,B58,B59,B6,B61,B63,B64,B65,B68,B69,B7,B73,B75,B77,B81,B82,B83,B84,B85,B87,B88,B89,B9,B90,B91,B92,B95,C1,C10,C11,C12,C13,C15,C18,C19,C20,C21,C22,C23,C24,C25,C28,C29,C31,C33,C35,C36,C37,C40,C42,C43,C45,C48,C49,C5,C51,C55,C56,C58,C59,C6,C60,C61,C64,C65,C66,C69,C72,C73,C75,C78,C8,C80,C81,C82,C84,C85,C86,C9,D4,D6,D8,D9
typical_cds_rare	Chr1	49949204	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	3	B7,B91,C3
typical_cds_rare	Chr1	49949237	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	2	B36,B47
lof_cds	Chr1	49949240	C	CAG	INDEL	2bp_insertion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	149	A10,A11,A13,A15,A18,A19,A20,A21,A22,A23,A4,A5,A6,A7,A8,A9,B10,B101,B102,B103,B105,B106,B107,B108,B109,B11,B110,B112,B122,B123,B124,B125,B126,B129,B13,B130,B132,B133,B134,B136,B137,B138,B140,B16,B17,B18,B20,B21,B22,B24,B26,B27,B3,B30,B31,B32,B34,B35,B36,B38,B39,B4,B40,B41,B45,B46,B47,B49,B50,B51,B52,B54,B57,B58,B59,B6,B61,B63,B64,B65,B68,B69,B73,B75,B77,B81,B82,B83,B84,B85,B87,B88,B89,B9,B95,C1,C10,C11,C12,C13,C15,C18,C19,C20,C21,C22,C23,C24,C25,C28,C29,C31,C33,C35,C36,C37,C42,C43,C45,C49,C5,C51,C55,C56,C58,C59,C6,C60,C61,C64,C65,C66,C69,C72,C73,C75,C78,C8,C80,C81,C82,C83,C84,C85,C86,C9,D4,D8,D9
lof_cds	Chr1	49949245	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	146	A10,A11,A13,A15,A18,A19,A20,A21,A22,A23,A4,A5,A6,A7,A8,A9,B10,B101,B102,B103,B105,B106,B107,B108,B109,B11,B110,B112,B122,B124,B125,B126,B129,B13,B130,B132,B133,B134,B136,B137,B138,B140,B16,B17,B18,B20,B21,B22,B24,B26,B27,B3,B30,B31,B32,B34,B35,B36,B38,B39,B4,B40,B41,B45,B46,B47,B49,B50,B51,B52,B54,B57,B58,B59,B6,B61,B63,B64,B65,B68,B73,B75,B81,B82,B83,B84,B85,B87,B88,B89,B9,B95,C1,C10,C11,C12,C13,C15,C18,C19,C20,C21,C22,C23,C24,C25,C28,C29,C31,C33,C35,C36,C37,C42,C43,C45,C49,C5,C51,C55,C56,C58,C59,C6,C60,C61,C64,C65,C66,C69,C72,C73,C75,C78,C8,C80,C81,C82,C83,C84,C85,C86,C9,D4,D8,D9
lof_cds	Chr1	49949255	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	B47
typical_cds_rare	Chr1	49949255	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	B47
typical_cds_rare	Chr1	49949269	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	5	B117,B125,B90,B92,C65
typical_cds_rare	Chr1	49949310	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	C45
typical_cds_rare	Chr1	49949341	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	C45
typical_cds_rare	Chr1	49949373	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	C45
typical_cds_rare	Chr1	49949392	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	B44
typical_cds_rare	Chr1	49949517	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	2	B35,C38
typical_cds_rare	Chr1	49949538	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	2	B35,C38
typical_cds_rare	Chr1	49949541	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	2	B35,C38
typical_cds_rare	Chr1	49949581	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	5	A21,A5,C12,C61,C78
typical_cds_rare	Chr1	49949589	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	2	B35,C38
typical_cds_rare	Chr1	49949617	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	B35
lof_cds	Chr1	49949621	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	B35
typical_cds_rare	Chr1	49949621	A	AC	INDEL	1bp_insertion	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	B35
lof_cds	Chr1	49949626	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	B35
typical_cds_rare	Chr1	49949626	A	ACC	INDEL	2bp_insertion	CDS_variant	LOC130990095	SmilChr01G003110	130990095	rna-XM_057914304.1	1	B35