source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	50116406	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	7	B119,B23,B28,B55,B67,B71,B85
typical_cds_rare	Chr1	50116529	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	1	B16
lof_cds	Chr1	50116532	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	9	B13,B23,B37,B96,C29,C45,C54,C68,C71
typical_cds_rare	Chr1	50116542	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	3	B24,C12,C76
lof_cds	Chr1	50116546	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	17	A10,A22,A6,B13,B37,B65,B96,C15,C29,C45,C54,C56,C58,C66,C68,C70,C71
lof_cds	Chr1	50116548	AGG	A	INDEL	2bp_deletion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	21	A10,A22,A6,B13,B23,B27,B37,B65,B69,B92,B96,C15,C29,C45,C54,C56,C58,C66,C68,C70,C71
lof_cds	Chr1	50116560	ACT	A	INDEL	2bp_deletion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	3	B24,C12,C76
typical_cds_rare	Chr1	50116560	ACT	A	INDEL	2bp_deletion	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	3	B24,C12,C76
lof_cds	Chr1	50116574	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	37	A10,A2,A22,A4,A6,B12,B13,B136,B23,B27,B28,B37,B5,B60,B65,B69,B70,B92,B96,B97,C15,C21,C29,C37,C43,C45,C49,C54,C56,C58,C66,C68,C69,C70,C71,C72,C82
typical_cds_rare	Chr1	50116612	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	4	B24,C12,C74,C76
lof_cds	Chr1	50116619	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	43	A10,A2,A4,A6,B103,B12,B13,B136,B137,B23,B27,B28,B4,B41,B47,B5,B55,B60,B65,B69,B70,B72,B92,B97,C15,C16,C21,C35,C37,C45,C48,C49,C54,C56,C58,C66,C67,C68,C71,C72,C82,C83,C86
lof_cds	Chr1	50116639	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	50	A10,A2,A22,A4,A6,B103,B12,B122,B13,B136,B137,B23,B27,B28,B4,B41,B47,B5,B55,B60,B65,B69,B70,B72,B92,B97,C15,C16,C21,C29,C35,C37,C43,C45,C48,C49,C54,C56,C58,C66,C67,C68,C69,C70,C71,C72,C82,C83,C86,D6
lof_cds	Chr1	50116646	C	CTT	INDEL	2bp_insertion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	13	B123,B24,B26,B56,B61,B8,C12,C40,C43,C74,C76,D4,D7
lof_cds	Chr1	50116648	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	62	A10,A2,A22,A4,A5,A6,B103,B112,B12,B122,B13,B136,B137,B23,B27,B28,B37,B4,B41,B47,B5,B54,B55,B59,B60,B65,B69,B70,B72,B80,B84,B92,B96,B97,C15,C16,C21,C29,C35,C37,C42,C43,C45,C48,C49,C54,C56,C58,C66,C67,C68,C69,C70,C71,C72,C82,C83,C84,C86,D1,D4,D6
lof_cds	Chr1	50116651	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	15	B123,B24,B26,B38,B56,B61,B8,C12,C19,C40,C43,C74,C76,D4,D7
lof_cds	Chr1	50116662	T	TTG	INDEL	2bp_insertion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	60	A10,A16,A2,A22,A4,A5,A6,B10,B103,B112,B12,B122,B13,B136,B137,B23,B27,B28,B37,B4,B41,B47,B5,B54,B55,B59,B60,B65,B69,B70,B80,B84,B92,B96,B97,C15,C21,C29,C35,C37,C42,C43,C45,C48,C49,C54,C56,C58,C66,C67,C68,C69,C70,C72,C82,C84,C86,D1,D4,D6
lof_cds	Chr1	50116665	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	65	A10,A16,A2,A22,A3,A4,A5,A6,B10,B103,B112,B12,B122,B13,B136,B137,B23,B27,B28,B37,B4,B41,B47,B5,B54,B55,B59,B60,B65,B67,B69,B70,B80,B84,B86,B92,B96,B97,C15,C21,C29,C35,C37,C4,C42,C43,C45,C48,C49,C52,C54,C56,C58,C66,C67,C68,C69,C70,C72,C82,C84,C86,D1,D4,D6
lof_cds	Chr1	50116723	C	CTG	INDEL	2bp_insertion	stop_gained,frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	31	A22,A3,A5,B108,B122,B133,B14,B34,B41,B47,B5,B53,B55,B67,B69,B72,B86,B91,B92,B96,C15,C2,C21,C29,C48,C49,C54,C65,C66,C67,C84
lof_cds	Chr1	50116728	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	30	A16,A22,A3,A5,B108,B122,B133,B14,B34,B41,B47,B5,B53,B55,B67,B72,B91,B96,C15,C2,C20,C21,C29,C48,C49,C54,C65,C66,C67,C84
lof_cds	Chr1	50116758	T	TGC	INDEL	2bp_insertion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	13	A22,B122,B133,B14,B34,B5,B96,C2,C21,C48,C65,C66,C67
lof_cds	Chr1	50116776	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	51	A14,A15,A16,A2,A5,A9,B127,B129,B13,B130,B132,B133,B136,B137,B18,B24,B26,B49,B52,B60,B61,B65,B66,B69,B80,B86,B98,C12,C18,C19,C26,C35,C37,C40,C46,C50,C56,C61,C66,C67,C74,C78,C8,C80,C82,C83,C84,C86,C9,D6,D7
typical_cds_rare	Chr1	50116830	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	4	A19,B28,B95,C30
lof_cds	Chr1	50116929	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	2	B6,D9
typical_cds_rare	Chr1	50116929	G	GC	INDEL	1bp_insertion	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	2	B6,D9
typical_cds_rare	Chr1	50116960	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	2	B6,D9
typical_cds_rare	Chr1	50116971	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	2	B6,D9
typical_cds_rare	Chr1	50116979	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	4	B45,B6,C79,D9
lof_cds	Chr1	50116985	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	1	C71
typical_cds_rare	Chr1	50116985	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	1	C71
typical_cds_rare	Chr1	50116999	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	5	B43,B6,C71,C79,D9
typical_cds_rare	Chr1	50117023	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	4	B45,B6,C79,D9
lof_cds	Chr1	50117058	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	1	C3
typical_cds_rare	Chr1	50117058	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	1	C3
lof_cds	Chr1	50117170	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	2	B48,B86
typical_cds_rare	Chr1	50117170	C	CG	INDEL	1bp_insertion	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	2	B48,B86
typical_cds_rare	Chr1	50117183	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	1	C3
typical_cds_rare	Chr1	50117197	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	2	B18,B40
typical_cds_rare	Chr1	50117240	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	1	C3
typical_cds_rare	Chr1	50117259	TGG	*	INDEL	2bp_deletion	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	3	B13,B21,C34
lof_cds	Chr1	50117279	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	69	A14,A16,A2,A25,A3,A4,A5,A7,A8,A9,B1,B10,B100,B101,B107,B115,B117,B12,B120,B127,B13,B135,B139,B15,B2,B20,B22,B27,B37,B40,B44,B48,B58,B66,B67,B7,B72,B76,B77,B79,B90,B92,C16,C18,C20,C23,C24,C25,C26,C3,C32,C33,C39,C4,C46,C47,C49,C52,C61,C65,C68,C71,C72,C73,C77,C87,D1,D2,D6
lof_cds	Chr1	50117282	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	2	B114,C81
typical_cds_rare	Chr1	50117282	A	AG	INDEL	1bp_insertion	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	2	B114,C81
typical_cds_rare	Chr1	50117365	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	1	B41
typical_cds_rare	Chr1	50117384	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	4	B36,C30,C32,C81
lof_cds	Chr1	50117396	GAC	G	INDEL	2bp_deletion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	2	B36,C30
typical_cds_rare	Chr1	50117396	GAC	G	INDEL	2bp_deletion	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	2	B36,C30
lof_cds	Chr1	50117399	G	GGT	INDEL	2bp_insertion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	2	B36,C30
typical_cds_rare	Chr1	50117399	G	GGT	INDEL	2bp_insertion	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	2	B36,C30
typical_cds_rare	Chr1	50117408	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	5	B18,B40,B49,B78,D11
typical_cds_rare	Chr1	50117409	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	2	B36,C30
typical_cds_rare	Chr1	50117423	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	1	C30
typical_cds_rare	Chr1	50117443	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	1	C30
typical_cds_rare	Chr1	50117455	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	1	C30
typical_cds_rare	Chr1	50117461	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	5	A22,B82,C34,C63,C67
lof_cds	Chr1	50117479	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	1	C30
typical_cds_rare	Chr1	50117479	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	1	C30
typical_cds_rare	Chr1	50117489	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	1	C30
typical_cds_rare	Chr1	50117551	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	3	B113,B114,C55
lof_cds	Chr1	50117565	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	3	A6,B85,C17
typical_cds_rare	Chr1	50117565	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	3	A6,B85,C17
typical_cds_rare	Chr1	50117621	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	4	A13,C22,C53,C55
lof_cds	Chr1	50117646	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	10	A14,A4,B10,B100,B117,B37,B77,C16,C24,C65
lof_cds	Chr1	50117647	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	9	A1,B136,B27,B71,B89,B99,C48,C61,D11
lof_cds	Chr1	50117664	TGC	T	INDEL	2bp_deletion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	6	B11,B67,B74,C22,C55,C66
lof_cds	Chr1	50117666	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	61	A14,A16,A2,A25,A3,A4,A5,A7,A8,A9,B10,B100,B101,B107,B117,B12,B120,B127,B13,B135,B139,B15,B2,B20,B22,B27,B37,B40,B44,B48,B58,B66,B67,B7,B72,B76,B77,B79,C16,C18,C23,C24,C25,C26,C3,C33,C4,C46,C47,C49,C52,C61,C65,C68,C71,C72,C73,C77,C87,D1,D2
typical_cds_rare	Chr1	50117702	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	2	C32,C87
lof_cds	Chr1	50117704	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	5	B11,B15,B74,C22,C55
typical_cds_rare	Chr1	50117704	A	AC	INDEL	1bp_insertion	CDS_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	5	B11,B15,B74,C22,C55
lof_cds	Chr1	50117708	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131009470	SmilChr01G003128	131009470	rna-XM_057936818.1	6	B11,B136,B15,B74,C22,C55