source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr1	50414624	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	5	B104,B25,B78,B98,D10
lof_cds	Chr1	50414659	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	11	A14,A18,B100,B104,B106,B30,B37,B84,B94,C19,D9
lof_cds	Chr1	50414682	T	TCC	INDEL	2bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	64	A13,A14,A2,A21,A5,B1,B100,B103,B119,B120,B124,B125,B126,B129,B134,B137,B140,B15,B2,B20,B27,B35,B37,B44,B5,B50,B51,B52,B53,B55,B59,B6,B66,B67,B75,B77,B78,B88,B89,B92,C15,C18,C2,C25,C26,C36,C48,C52,C53,C6,C63,C66,C68,C7,C70,C73,C74,C8,C80,C84,C87,D1,D4,D9
lof_cds	Chr1	50414684	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	65	A13,A14,A2,A21,A5,B1,B100,B103,B119,B120,B124,B125,B126,B129,B134,B137,B140,B15,B2,B20,B27,B35,B37,B44,B5,B50,B51,B52,B53,B55,B59,B6,B66,B67,B75,B77,B78,B88,B89,B92,C13,C15,C18,C2,C25,C26,C36,C48,C52,C53,C6,C63,C66,C68,C7,C70,C73,C74,C8,C80,C84,C87,D1,D4,D9
typical_cds_rare	Chr1	50414699	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	3	B117,C48,C65
typical_cds_rare	Chr1	50414705	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	5	B104,B25,B78,B98,D10
lof_cds	Chr1	50414706	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	46	A13,A21,A5,B1,B103,B119,B120,B124,B125,B129,B134,B137,B140,B15,B20,B44,B5,B50,B51,B52,B53,B55,B6,B75,B88,B89,C15,C18,C2,C25,C52,C53,C56,C63,C66,C68,C7,C70,C73,C74,C8,C84,C87,D1,D4,D9
lof_cds	Chr1	50414711	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	47	A13,A2,A21,A5,B1,B103,B119,B120,B124,B125,B134,B137,B140,B15,B19,B20,B44,B5,B50,B52,B53,B55,B6,B75,B88,B89,C15,C18,C2,C25,C52,C53,C56,C63,C66,C68,C7,C70,C73,C74,C8,C80,C84,C87,D1,D4,D9
typical_cds_rare	Chr1	50414742	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	3	B13,C14,C74
lof_cds	Chr1	50414792	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	2	B52,B89
typical_cds_rare	Chr1	50414792	G	GT	INDEL	1bp_insertion	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	2	B52,B89
typical_cds_rare	Chr1	50414799	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	3	A9,B89,C77
lof_cds	Chr1	50414804	G	GAT	INDEL	2bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	D9
typical_cds_rare	Chr1	50414804	G	GAT	INDEL	2bp_insertion	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	D9
lof_cds	Chr1	50414810	A	ATT	INDEL	2bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	D9
typical_cds_rare	Chr1	50414810	A	ATT	INDEL	2bp_insertion	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	D9
lof_cds	Chr1	50414859	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	B2
typical_cds_rare	Chr1	50414859	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	B2
typical_cds_rare	Chr1	50414861	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	5	B23,B28,B67,C38,C75
typical_cds_rare	Chr1	50414908	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	2	C77,D10
typical_cds_rare	Chr1	50414914	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	2	C77,D10
typical_cds_rare	Chr1	50414970	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	4	B104,B132,B98,D10
typical_cds_rare	Chr1	50414983	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	2	B71,C16
typical_cds_rare	Chr1	50415043	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	C48
lof_cds	Chr1	50415053	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	53	A11,A16,A18,A6,A7,A8,B101,B109,B110,B114,B119,B121,B126,B134,B138,B140,B15,B19,B4,B49,B53,B61,B77,B79,B80,B82,B87,B9,B95,C12,C17,C21,C25,C3,C30,C32,C41,C52,C53,C6,C63,C67,C68,C70,C71,C72,C73,C76,C82,D1,D11,D3,D9
lof_cds	Chr1	50415056	G	GAA	INDEL	2bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	3	B137,B29,C36
typical_cds_rare	Chr1	50415056	G	GAA	INDEL	2bp_insertion	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	3	B137,B29,C36
lof_cds	Chr1	50415084	T	TAA	INDEL	2bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	5	B137,B29,B44,C22,C36
typical_cds_rare	Chr1	50415084	T	TAA	INDEL	2bp_insertion	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	5	B137,B29,B44,C22,C36
lof_cds	Chr1	50415085	CTT	C	INDEL	2bp_deletion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	5	B137,B29,B44,C22,C36
typical_cds_rare	Chr1	50415085	CTT	C	INDEL	2bp_deletion	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	5	B137,B29,B44,C22,C36
lof_cds	Chr1	50415108	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	5	B137,B29,B44,C26,C36
typical_cds_rare	Chr1	50415108	AG	A	INDEL	1bp_deletion	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	5	B137,B29,B44,C26,C36
typical_cds_rare	Chr1	50415134	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	2	B40,B50
lof_cds	Chr1	50415182	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	20	A22,A4,A6,B10,B123,B134,B16,B3,B32,B59,B6,B66,B77,B90,B92,C1,C14,C42,C83,D11
lof_cds	Chr1	50415199	AAG	A	INDEL	2bp_deletion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	19	B100,B128,B133,B140,B44,B51,B55,B64,B67,B90,B95,C15,C38,C39,C47,C63,D1,D3,D6
typical_cds_rare	Chr1	50415209	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	3	B13,C14,C74
typical_cds_rare	Chr1	50415211	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	3	B109,B40,B65
lof_cds	Chr1	50415220	AAC	A	INDEL	2bp_deletion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	21	B100,B102,B128,B133,B140,B44,B51,B55,B64,B67,B90,B95,C15,C29,C38,C39,C45,C63,D1,D3,D6
lof_cds	Chr1	50415224	T	TTG	INDEL	2bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	21	B100,B102,B128,B133,B140,B44,B51,B55,B64,B67,B90,B95,C15,C29,C38,C39,C45,C63,D1,D3,D6
lof_cds	Chr1	50415236	G	GC	INDEL	1bp_insertion	stop_gained,frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	17	B100,B128,B133,B140,B44,B51,B55,B64,B67,B90,B95,C29,C38,C45,C63,D1,D6
lof_cds	Chr1	50415244	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	B40
typical_cds_rare	Chr1	50415244	CA	C	INDEL	1bp_deletion	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	B40
lof_cds	Chr1	50415246	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	16	B100,B128,B133,B140,B44,B55,B64,B90,B95,C15,C29,C38,C45,C63,D1,D6
typical_cds_rare	Chr1	50415386	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	3	B40,B99,C15
typical_cds_rare	Chr1	50415435	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	B102
lof_cds	Chr1	50415458	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	18	A22,A4,A6,B10,B123,B134,B16,B3,B59,B6,B77,B90,B92,C1,C14,C42,C83,D11
typical_cds_rare	Chr1	50415474	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	3	B40,B99,C15
lof_cds	Chr1	50415515	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	6	B22,B32,B50,C62,C65,C87
typical_cds_rare	Chr1	50415520	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	D11
typical_cds_rare	Chr1	50415525	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	5	A19,B12,B78,B9,C2
typical_cds_rare	Chr1	50415604	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	3	B118,C67,D2
typical_cds_rare	Chr1	50415612	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	4	B118,B65,C67,D2
lof_cds	Chr1	50415617	TAC	T	INDEL	2bp_deletion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	2	B46,B73
typical_cds_rare	Chr1	50415617	TAC	T	INDEL	2bp_deletion	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	2	B46,B73
lof_cds	Chr1	50415688	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	38	A15,A4,B108,B11,B111,B112,B117,B118,B128,B133,B135,B137,B139,B17,B18,B24,B26,B56,B60,B68,B72,B80,B86,B91,B96,B99,C22,C27,C31,C35,C39,C47,C5,C57,C7,C78,C79,C84
lof_cds	Chr1	50416086	G	GAT	INDEL	2bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	47	A1,A2,A25,A3,A5,A7,A9,B1,B10,B100,B107,B115,B12,B120,B126,B13,B135,B139,B14,B20,B33,B40,B44,B48,B58,B65,B7,B72,B73,B76,B85,C10,C18,C19,C23,C26,C33,C4,C41,C46,C47,C49,C52,C61,C78,D2,D5
lof_cds	Chr1	50416093	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	7	B139,C1,C19,C21,C3,C31,D8
lof_cds	Chr1	50416170	A	AAG	INDEL	2bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	D10
typical_cds_rare	Chr1	50416170	A	AAG	INDEL	2bp_insertion	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	D10
lof_cds	Chr1	50416182	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	4	A24,B113,B33,C15
typical_cds_rare	Chr1	50416182	G	GA	INDEL	1bp_insertion	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	4	A24,B113,B33,C15
typical_cds_rare	Chr1	50416184	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	5	B127,B25,B6,C54,C79
typical_cds_rare	Chr1	50416186	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	B2
typical_cds_rare	Chr1	50416192	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	C30
typical_cds_rare	Chr1	50416195	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	4	B120,C37,C39,C46
typical_cds_rare	Chr1	50416228	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	3	C37,C39,C46
typical_cds_rare	Chr1	50416264	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	C77
typical_cds_rare	Chr1	50416265	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	B2
typical_cds_rare	Chr1	50416354	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	5	B12,B51,C13,C7,D1
typical_cds_rare	Chr1	50416364	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	B40
lof_cds	Chr1	50416471	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	6	A18,B79,C3,C32,C67,D11
typical_cds_rare	Chr1	50416504	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	1	B32
typical_cds_rare	Chr1	50416512	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	4	B89,C23,C58,D2
lof_cds	Chr1	50416522	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	5	A19,B89,C23,C58,D2
typical_cds_rare	Chr1	50416522	T	TG	INDEL	1bp_insertion	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	5	A19,B89,C23,C58,D2
lof_cds	Chr1	50416545	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	3	C23,C54,C58
typical_cds_rare	Chr1	50416545	A	AT	INDEL	1bp_insertion	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	3	C23,C54,C58
lof_cds	Chr1	50416553	AAG	A	INDEL	2bp_deletion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	3	C23,C54,C58
typical_cds_rare	Chr1	50416553	AAG	A	INDEL	2bp_deletion	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	3	C23,C54,C58
lof_cds	Chr1	50416594	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	10	B16,B6,B89,C23,C43,C44,C54,C58,C6,C65
typical_cds_rare	Chr1	50416623	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	4	B1,B125,B90,B92
lof_cds	Chr1	50416649	AGT	A	INDEL	2bp_deletion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	19	B118,B136,B16,B22,B32,B33,B40,B6,B83,B89,C23,C40,C44,C54,C56,C58,C65,C81,D4
lof_cds	Chr1	50416662	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC130990468	SmilChr01G003158	130990468	rna-XM_057914701.1	22	A19,B118,B136,B137,B16,B22,B23,B32,B33,B40,B47,B6,B83,B89,C40,C44,C54,C56,C58,C65,C81,D4