source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	50904439	CCT	C	INDEL	2bp_deletion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1	85	A14,A15,A20,A3,A7,B1,B10,B100,B104,B105,B107,B108,B109,B11,B119,B120,B121,B125,B131,B133,B134,B135,B136,B137,B139,B17,B18,B25,B26,B29,B31,B37,B4,B40,B42,B47,B5,B56,B63,B67,B69,B7,B71,B72,B73,B76,B8,B84,B85,B9,B90,B92,B93,B96,B98,C16,C2,C20,C23,C24,C30,C31,C33,C34,C36,C39,C4,C42,C47,C52,C55,C57,C6,C63,C70,C73,C74,C81,C85,D1,D10,D3,D4,D7,D9
lof_cds	Chr1	50904572	CAG	C	INDEL	2bp_deletion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	87	A14,A19,A21,A7,B100,B105,B107,B108,B11,B117,B121,B123,B124,B125,B126,B131,B134,B135,B136,B140,B18,B25,B3,B30,B32,B35,B37,B42,B43,B47,B56,B57,B69,B7,B73,B75,B76,B78,B79,B8,B85,B87,B88,B89,B9,B90,B92,B93,B94,B95,B96,C11,C16,C20,C23,C24,C29,C3,C39,C43,C45,C55,C57,C59,C60,C62,C63,C64,C65,C66,C69,C70,C74,C77,C8,C80,C82,C83,C84,C85,C86,C87,D10,D2,D4,D8,D9
lof_cds	Chr1	50904591	A	AGG	INDEL	2bp_insertion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	22	A20,A3,B1,B104,B107,B118,B120,B125,B139,B29,B40,B71,B72,B77,B84,B90,B92,B98,C33,C4,C47,C52
lof_cds	Chr1	50904761	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	2	B84,B98
typical_cds_rare	Chr1	50904761	ATT	A	INDEL	2bp_deletion	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	2	B84,B98
typical_cds_rare	Chr1	50904762	TTC	*	INDEL	2bp_deletion	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	2	B84,B98
typical_cds_rare	Chr1	50905197	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	2	B86,C44
typical_cds_rare	Chr1	50905375	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	2	B90,B92
typical_cds_rare	Chr1	50905441	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	1	B104
typical_cds_rare	Chr1	50905591	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	1	B25
typical_cds_rare	Chr1	50905670	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	2	B105,B75
typical_cds_rare	Chr1	50905718	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	1	A23
lof_cds	Chr1	50905738	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	1	C60
typical_cds_rare	Chr1	50905738	AT	A	INDEL	1bp_deletion	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	1	C60
typical_cds_rare	Chr1	50905830	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	2	B66,B68
lof_cds	Chr1	50906055	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	2	B125,B71
typical_cds_rare	Chr1	50906055	TCC	T	INDEL	2bp_deletion	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	2	B125,B71
lof_cds	Chr1	50906064	T	TGG	INDEL	2bp_insertion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	2	B125,B71
typical_cds_rare	Chr1	50906064	T	TGG	INDEL	2bp_insertion	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	2	B125,B71
typical_cds_rare	Chr1	50906068	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	2	B125,B71
typical_cds_rare	Chr1	50906099	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	4	B103,B105,B125,B71
typical_cds_rare	Chr1	50906124	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	4	B103,B105,B125,B71
typical_cds_rare	Chr1	50906135	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	5	B126,B80,C6,C63,C67
typical_cds_rare	Chr1	50906144	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	3	B105,B125,B71
typical_cds_rare	Chr1	50906153	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	4	B103,B105,B125,B71
typical_cds_rare	Chr1	50906161	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	5	B126,B80,C6,C63,C67
typical_cds_rare	Chr1	50906169	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	3	B103,B105,B71
typical_cds_rare	Chr1	50906170	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	3	B103,B105,B71
typical_cds_rare	Chr1	50906251	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	3	B105,B135,B75
lof_cds	Chr1	50906253	G	GGT	INDEL	2bp_insertion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	1	D4
typical_cds_rare	Chr1	50906253	G	GGT	INDEL	2bp_insertion	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	1	D4
lof_cds	Chr1	50906290	C	CTA	INDEL	2bp_insertion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	1	C66
typical_cds_rare	Chr1	50906290	C	CTA	INDEL	2bp_insertion	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	1	C66
typical_cds_rare	Chr1	50906525	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	2	B89,D8
lof_cds	Chr1	50906915	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	9	B101,B106,B123,B13,B136,B54,B97,C1,C51
lof_cds	Chr1	50906971	CTT	C	INDEL	2bp_deletion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	63	A10,A19,A24,A8,A9,B105,B107,B109,B111,B112,B122,B124,B130,B135,B2,B22,B23,B25,B26,B3,B33,B35,B38,B39,B4,B41,B5,B55,B57,B60,B63,B7,B72,B75,B81,B85,B86,B88,B91,B99,C15,C16,C2,C21,C28,C29,C35,C45,C5,C53,C6,C7,C79,C8,C83,C84,C86,C87,C9,D1,D11,D2,D8
lof_cds	Chr1	50906975	A	AGC	INDEL	2bp_insertion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915150.1,rna-XM_057915153.1	64	A10,A19,A24,A7,A8,A9,B105,B107,B109,B111,B112,B122,B124,B130,B135,B2,B23,B25,B26,B3,B33,B35,B38,B39,B4,B41,B5,B55,B57,B60,B63,B7,B72,B75,B81,B85,B86,B88,B91,B99,C15,C16,C2,C21,C28,C29,C35,C45,C5,C53,C57,C6,C7,C79,C8,C83,C84,C86,C87,C9,D1,D11,D2,D8
typical_cds_rare	Chr1	50908390	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	1	B84
typical_cds_rare	Chr1	50908821	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	2	B84,B98
typical_cds_rare	Chr1	50908824	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	1	D11
typical_cds_rare	Chr1	50908825	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	1	D11
lof_cds	Chr1	50908994	TAA	T	INDEL	2bp_deletion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	1	A23
typical_cds_rare	Chr1	50908994	TAA	T	INDEL	2bp_deletion	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	1	A23
lof_cds	Chr1	50909050	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	22	B121,B125,B136,B137,B18,B23,B32,B42,B73,B87,B95,C24,C62,C70,C73,C74,C77,C81,C83,C84,C85,C87
typical_cds_rare	Chr1	50909090	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	2	B90,B92
typical_cds_rare	Chr1	50909299	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	2	C87,D11
typical_cds_rare	Chr1	50909303	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	3	B117,B47,C65
typical_cds_rare	Chr1	50909531	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	1	B28
typical_cds_rare	Chr1	50909606	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	2	B104,D11
typical_cds_rare	Chr1	50909762	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	1	A11
typical_cds_rare	Chr1	50909766	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	2	B86,C44
typical_cds_rare	Chr1	50909782	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	1	B104
typical_cds_rare	Chr1	50909794	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	2	B86,C44
typical_cds_rare	Chr1	50909829	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	1	B28
typical_cds_rare	Chr1	50909861	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	1	D11
lof_cds	Chr1	50909878	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	13	A1,B102,B33,B34,B70,B74,C13,C17,C27,C29,C41,C76,C81
typical_cds_rare	Chr1	50910026	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	2	C87,D11
lof_cds	Chr1	50910057	CAT	C	INDEL	2bp_deletion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	3	C38,C48,C51
typical_cds_rare	Chr1	50910057	CAT	C	INDEL	2bp_deletion	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	3	C38,C48,C51
lof_cds	Chr1	50910065	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	3	C38,C48,C51
typical_cds_rare	Chr1	50910065	CA	C	INDEL	1bp_deletion	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	3	C38,C48,C51
lof_cds	Chr1	50910069	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	3	C38,C48,C51
typical_cds_rare	Chr1	50910069	AG	A	INDEL	1bp_deletion	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	3	C38,C48,C51
typical_cds_rare	Chr1	50910090	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	4	C38,C48,C50,C51
typical_cds_rare	Chr1	50910116	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	4	C38,C48,C50,C51
lof_cds	Chr1	50910118	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	22	B121,B125,B136,B137,B18,B23,B32,B42,B43,B73,B87,B95,C24,C62,C70,C73,C74,C77,C81,C83,C84,C87
typical_cds_rare	Chr1	50910128	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	1	C75
typical_cds_rare	Chr1	50910142	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	4	B56,B76,B96,D7
typical_cds_rare	Chr1	50910155	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	2	C48,C51
typical_cds_rare	Chr1	50910163	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	4	C36,C48,C51,D4
typical_cds_rare	Chr1	50910263	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	4	B25,B28,C6,C69
typical_cds_rare	Chr1	50910269	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	2	B86,C44
typical_cds_rare	Chr1	50910277	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	3	B131,C20,C39
lof_cds	Chr1	50910352	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	2	B55,B82
typical_cds_rare	Chr1	50910352	A	AT	INDEL	1bp_insertion	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	2	B55,B82
typical_cds_rare	Chr1	50910403	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	3	B131,C20,C39
typical_cds_rare	Chr1	50910475	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	3	A21,B121,B93
typical_cds_rare	Chr1	50910476	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	4	B105,B135,B26,B75
typical_cds_rare	Chr1	50910505	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	2	C11,C69
lof_cds	Chr1	50910527	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	1	D11
typical_cds_rare	Chr1	50910527	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	1	D11
typical_cds_rare	Chr1	50910536	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	1	C87
typical_cds_rare	Chr1	50910550	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	4	B131,C20,C39,C72
lof_cds	Chr1	50910628	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	1	B46
typical_cds_rare	Chr1	50910628	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130990919	SmilChr01G003213	130990919	rna-XM_057915158.1	1	B46