source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	51463743	A	ATG	INDEL	2bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B130,B80,C40
typical_cds_rare	Chr1	51463743	A	ATG	INDEL	2bp_insertion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B130,B80,C40
lof_cds	Chr1	51463755	GCC	G	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	5	B130,B48,B80,C40,C65
typical_cds_rare	Chr1	51463755	GCC	G	INDEL	2bp_deletion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	5	B130,B48,B80,C40,C65
typical_cds_rare	Chr1	51463761	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	5	B130,B48,B80,C40,C65
lof_cds	Chr1	51463770	TCG	T	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	6	B130,B48,B67,B80,C40,C65
lof_cds	Chr1	51463781	T	TAG	INDEL	2bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	6	B130,B48,B67,B80,C40,C65
lof_cds	Chr1	51463783	TTA	T	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	7	B130,B51,B67,B80,C40,C65,D10
lof_cds	Chr1	51463797	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	9	B13,B130,B48,B51,B67,B73,B80,C40,C65
lof_cds	Chr1	51463801	GGT	G	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	9	B13,B130,B48,B51,B67,B73,B80,C40,C65
lof_cds	Chr1	51463806	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	9	B13,B130,B48,B51,B67,B73,B80,C40,C65
lof_cds	Chr1	51463814	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	8	B130,B48,B51,B67,B73,B80,C40,C65
typical_cds_rare	Chr1	51463837	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	B46
typical_cds_rare	Chr1	51463843	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	D11
lof_cds	Chr1	51463913	GAC	G	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	6	A11,B102,B91,C48,C58,C65
lof_cds	Chr1	51463936	CGG	C	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	5	B102,B84,B91,B93,C65
typical_cds_rare	Chr1	51463936	CGG	C	INDEL	2bp_deletion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	5	B102,B84,B91,B93,C65
lof_cds	Chr1	51463939	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	5	B102,B84,B91,B93,C65
typical_cds_rare	Chr1	51463939	C	CT	INDEL	1bp_insertion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	5	B102,B84,B91,B93,C65
typical_cds_rare	Chr1	51463940	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B15,C33,C58
lof_cds	Chr1	51463961	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	126	A1,A15,A16,A18,A19,A20,A25,A3,A4,A7,B10,B102,B103,B104,B110,B111,B112,B113,B115,B117,B119,B121,B123,B124,B126,B127,B13,B130,B134,B135,B137,B138,B140,B16,B17,B19,B20,B21,B22,B25,B29,B31,B34,B4,B40,B41,B46,B47,B48,B5,B51,B55,B59,B60,B61,B63,B67,B69,B70,B72,B73,B75,B77,B78,B79,B8,B80,B81,B82,B83,B84,B86,B87,B88,B9,B90,B91,B92,B93,B97,B99,C10,C12,C18,C2,C26,C27,C28,C3,C30,C32,C34,C35,C38,C4,C40,C44,C48,C49,C5,C50,C51,C52,C53,C56,C57,C6,C60,C61,C62,C63,C65,C67,C68,C7,C70,C71,C78,C82,C84,C86,D1,D10,D11,D2,D3
lof_cds	Chr1	51463964	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B40,B52,C55
typical_cds_rare	Chr1	51463964	TTC	T	INDEL	2bp_deletion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B40,B52,C55
lof_cds	Chr1	51463965	TCA	T	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	13	B102,B117,B128,B13,B139,B15,B17,B91,C61,C65,C79,D6,D8
lof_cds	Chr1	51463968	T	TGG	INDEL	2bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	10	B117,B128,B13,B139,B15,B17,C61,C79,D6,D8
lof_cds	Chr1	51463969	G	GGT	INDEL	2bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B52,C16,C55
typical_cds_rare	Chr1	51463969	G	GGT	INDEL	2bp_insertion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B52,C16,C55
lof_cds	Chr1	51463973	GTT	G	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B102,B91,C65
typical_cds_rare	Chr1	51463973	GTT	G	INDEL	2bp_deletion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B102,B91,C65
lof_cds	Chr1	51463976	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B102,B91,C65
typical_cds_rare	Chr1	51463976	AT	A	INDEL	1bp_deletion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B102,B91,C65
lof_cds	Chr1	51463990	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B133,B90,C54
typical_cds_rare	Chr1	51463990	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B133,B90,C54
lof_cds	Chr1	51464005	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	8	B106,B109,B124,B125,B82,C1,C14,C66
lof_cds	Chr1	51464014	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	B133,C54
typical_cds_rare	Chr1	51464014	C	CA	INDEL	1bp_insertion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	B133,C54
lof_cds	Chr1	51464082	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	122	A1,A15,A16,A18,A19,A20,A25,A3,A4,A7,B10,B102,B103,B104,B110,B111,B112,B113,B115,B117,B119,B121,B123,B124,B126,B127,B13,B130,B134,B135,B137,B138,B140,B16,B17,B19,B20,B21,B22,B25,B31,B34,B36,B4,B40,B41,B46,B47,B48,B5,B51,B55,B60,B61,B63,B67,B69,B70,B72,B73,B75,B77,B78,B79,B8,B80,B81,B82,B83,B84,B86,B87,B88,B9,B90,B91,B92,B93,B97,B99,C10,C12,C18,C2,C22,C26,C27,C28,C3,C30,C32,C34,C35,C38,C4,C40,C44,C48,C49,C5,C50,C51,C53,C56,C57,C6,C60,C61,C62,C63,C67,C68,C7,C70,C71,C82,C86,D1,D10,D11,D2,D3
lof_cds	Chr1	51464103	A	AAT	INDEL	2bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B18,B35,C36
typical_cds_rare	Chr1	51464103	A	AAT	INDEL	2bp_insertion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B18,B35,C36
lof_cds	Chr1	51464122	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B138,C65,C67
typical_cds_rare	Chr1	51464122	G	GC	INDEL	1bp_insertion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B138,C65,C67
lof_cds	Chr1	51464133	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	B136
typical_cds_rare	Chr1	51464133	G	GC	INDEL	1bp_insertion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	B136
typical_cds_rare	Chr1	51464142	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	D10
lof_cds	Chr1	51464231	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	44	A15,A18,A19,B103,B110,B112,B123,B126,B127,B134,B135,B137,B22,B4,B40,B47,B5,B51,B55,B61,B63,B72,B73,B75,B79,B84,B9,B99,C2,C22,C28,C3,C30,C34,C38,C4,C6,C62,C63,C7,C78,C82,D1,D2
lof_cds	Chr1	51464235	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	22	A16,A2,A9,B106,B109,B11,B32,B44,B45,B50,B83,B89,B9,B93,C19,C21,C26,C27,C53,C59,C71,C76
typical_cds_rare	Chr1	51464333	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B14,C28,C31
lof_cds	Chr1	51464424	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	102	A13,A18,A19,A21,A22,A23,A24,A3,A5,A6,A7,A8,B10,B100,B105,B106,B11,B12,B122,B125,B128,B132,B133,B136,B137,B138,B15,B16,B17,B2,B20,B28,B38,B39,B42,B43,B48,B49,B5,B50,B51,B52,B53,B54,B58,B6,B60,B63,B66,B68,B71,B75,B78,B79,B82,B85,B88,B89,B90,B91,B92,B93,B97,B98,C1,C10,C11,C14,C15,C18,C19,C20,C25,C30,C4,C42,C44,C46,C48,C49,C51,C54,C55,C6,C61,C62,C64,C66,C69,C77,C78,C79,C80,C82,C83,C9,D10,D11,D3,D4,D5,D8
typical_cds_rare	Chr1	51464562	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	C48
typical_cds_rare	Chr1	51464566	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	B26,D6
typical_cds_rare	Chr1	51464567	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	C48
lof_cds	Chr1	51464594	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	4	B17,C35,C48,C86
typical_cds_rare	Chr1	51464594	AT	A	INDEL	1bp_deletion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	4	B17,C35,C48,C86
lof_cds	Chr1	51464602	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	5	B17,B8,C35,C48,C86
typical_cds_rare	Chr1	51464602	CA	C	INDEL	1bp_deletion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	5	B17,B8,C35,C48,C86
lof_cds	Chr1	51464676	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	7	B21,B41,B63,B8,C35,C48,C86
lof_cds	Chr1	51464680	AGC	A	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	7	B21,B41,B63,B8,C35,C48,C86
lof_cds	Chr1	51464744	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	10	B111,B17,B21,B41,B47,B63,B8,C48,C86,D1
lof_cds	Chr1	51464750	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	10	B111,B17,B21,B41,B47,B63,B8,C48,C86,D1
lof_cds	Chr1	51464762	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	10	B111,B17,B21,B41,B47,B63,B8,C48,C86,D1
lof_cds	Chr1	51464767	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	9	B111,B17,B21,B41,B47,B63,B8,C48,D1
typical_cds_rare	Chr1	51464772	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	C25,C60
typical_cds_rare	Chr1	51464809	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	C25,C60
typical_cds_rare	Chr1	51464827	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	C27,C46
lof_cds	Chr1	51465008	ATC	A	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	B25,C5
typical_cds_rare	Chr1	51465008	ATC	A	INDEL	2bp_deletion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	B25,C5
lof_cds	Chr1	51465011	A	AGG	INDEL	2bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	B25,C5
typical_cds_rare	Chr1	51465011	A	AGG	INDEL	2bp_insertion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	B25,C5
lof_cds	Chr1	51465014	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	B25,C5
typical_cds_rare	Chr1	51465014	A	AG	INDEL	1bp_insertion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	B25,C5
lof_cds	Chr1	51465043	G	GGT	INDEL	2bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	9	B130,B25,B8,B90,B91,C35,C5,C61,C67
lof_cds	Chr1	51465052	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	7	A18,B90,B91,C35,C5,C61,C67
lof_cds	Chr1	51465053	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B130,B25,B8
typical_cds_rare	Chr1	51465053	G	GT	INDEL	1bp_insertion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B130,B25,B8
lof_cds	Chr1	51465171	CAT	C	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	8	A18,B123,B40,B80,B91,C35,C52,C56
lof_cds	Chr1	51465174	T	TCA	INDEL	2bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	B91,C52
typical_cds_rare	Chr1	51465174	T	TCA	INDEL	2bp_insertion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	B91,C52
lof_cds	Chr1	51465175	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	6	A18,B123,B40,B80,C35,C56
lof_cds	Chr1	51465187	CCA	C	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	6	A18,B123,B40,B80,C35,C56
lof_cds	Chr1	51465194	A	ATT	INDEL	2bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	6	A18,B123,B40,B80,C35,C56
typical_cds_rare	Chr1	51465211	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	4	A18,B80,C35,C56
lof_cds	Chr1	51465261	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	14	A1,A20,B112,B134,B19,B69,B80,B83,B90,B91,C2,C67,C68,C71
lof_cds	Chr1	51465270	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	35	A1,A20,A7,B102,B111,B112,B123,B124,B134,B135,B137,B16,B17,B19,B31,B47,B51,B67,B69,B75,B8,B80,B83,B90,B91,B99,C2,C28,C30,C35,C56,C67,C68,C71,D3
typical_cds_rare	Chr1	51465320	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	B104
typical_cds_rare	Chr1	51465467	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	A20
lof_cds	Chr1	51465535	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	C60
typical_cds_rare	Chr1	51465535	CAA	C	INDEL	2bp_deletion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	C60
typical_cds_rare	Chr1	51465538	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B100,B122,B77
typical_cds_rare	Chr1	51465551	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	C15
lof_cds	Chr1	51465553	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	16	B100,B122,B129,B13,B18,B40,B57,B64,B66,B73,B77,C21,C55,C71,C76,D1
lof_cds	Chr1	51465557	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	17	B100,B122,B129,B13,B136,B18,B40,B57,B64,B66,B73,B77,C21,C55,C71,C76,D1
typical_cds_rare	Chr1	51465581	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	C15
lof_cds	Chr1	51465586	AAT	A	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	C15
typical_cds_rare	Chr1	51465586	AAT	A	INDEL	2bp_deletion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	C15
typical_cds_rare	Chr1	51465627	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	4	B136,B40,B51,D1
typical_cds_rare	Chr1	51465630	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	5	B111,B25,C56,C65,D10
typical_cds_rare	Chr1	51465647	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	4	A13,B23,B34,B44
typical_cds_rare	Chr1	51465661	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	4	A19,B100,B122,B133
lof_cds	Chr1	51465667	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	33	A19,A20,A23,A5,B1,B100,B103,B11,B113,B117,B118,B120,B122,B133,B137,B15,B17,B29,B33,B47,B77,B95,C2,C33,C47,C53,C54,C58,C61,C64,C78,C82,D8
lof_cds	Chr1	51465739	T	TGG	INDEL	2bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	42	A13,A2,A3,B100,B106,B121,B13,B130,B135,B136,B2,B23,B3,B35,B37,B42,B43,B48,B52,B56,B59,B71,B73,B79,B91,B93,B95,B96,C21,C3,C33,C4,C53,C55,C62,C73,C78,C84,D1,D10,D2,D5
lof_cds	Chr1	51465740	CTT	C	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	40	A13,A2,A3,B100,B106,B121,B13,B130,B135,B136,B2,B3,B37,B42,B43,B48,B52,B56,B59,B71,B73,B79,B91,B95,B96,C21,C3,C33,C4,C53,C55,C62,C73,C78,C84,D1,D10,D2,D5,D9
typical_cds_rare	Chr1	51465754	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	D10
lof_cds	Chr1	51465806	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	4	A11,A19,B122,B133
typical_cds_rare	Chr1	51465806	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	4	A11,A19,B122,B133
typical_cds_rare	Chr1	51465823	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	B7,C61
typical_cds_rare	Chr1	51465946	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B13,B71,C78
typical_cds_rare	Chr1	51465962	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	B13,B71
typical_cds_rare	Chr1	51466160	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B105,B13,C66
typical_cds_rare	Chr1	51466165	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B105,B13,C66
typical_cds_rare	Chr1	51466179	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	B13,C66
lof_cds	Chr1	51466204	G	GTA	INDEL	2bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	62	A1,A11,A24,B1,B101,B102,B113,B118,B120,B129,B132,B133,B139,B140,B2,B24,B27,B29,B32,B33,B34,B35,B36,B37,B40,B42,B43,B52,B54,B56,B62,B69,B7,B70,B72,B74,B76,B9,B94,B96,C13,C14,C17,C27,C29,C33,C34,C36,C37,C41,C45,C47,C52,C58,C70,C71,C74,C76,C80,C85,C87,D7
lof_cds	Chr1	51466206	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	62	A1,A11,A24,B1,B101,B102,B113,B118,B120,B129,B132,B133,B139,B140,B2,B24,B27,B29,B32,B33,B34,B35,B36,B37,B40,B42,B43,B52,B54,B56,B62,B69,B7,B70,B72,B74,B76,B9,B94,B96,C13,C14,C17,C27,C29,C33,C34,C36,C37,C41,C45,C47,C52,C58,C70,C71,C74,C76,C80,C85,C87,D7
lof_cds	Chr1	51466210	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	61	A1,A11,A24,B1,B101,B102,B113,B118,B120,B129,B132,B133,B139,B140,B2,B24,B27,B29,B32,B33,B34,B35,B36,B37,B40,B42,B43,B52,B54,B56,B62,B69,B7,B70,B72,B74,B76,B9,B94,B96,C14,C17,C27,C29,C33,C34,C36,C37,C41,C45,C47,C52,C58,C70,C71,C74,C76,C80,C85,C87,D7
lof_cds	Chr1	51466211	A	AAC	INDEL	2bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	61	A1,A11,A24,B1,B101,B102,B113,B118,B120,B129,B132,B133,B139,B140,B2,B24,B27,B29,B32,B33,B34,B35,B36,B37,B40,B42,B43,B52,B54,B56,B62,B69,B7,B70,B72,B74,B76,B9,B94,B96,C14,C17,C27,C29,C33,C34,C36,C37,C41,C45,C47,C52,C58,C70,C71,C74,C76,C80,C85,C87,D7
typical_cds_rare	Chr1	51466213	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	5	B114,B99,C15,C72,C73
lof_cds	Chr1	51466223	C	CTG	INDEL	2bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	60	A1,A11,A24,B1,B101,B102,B113,B118,B120,B129,B132,B133,B139,B140,B2,B24,B27,B29,B32,B33,B34,B35,B36,B40,B42,B43,B52,B54,B56,B62,B69,B7,B70,B72,B74,B76,B9,B94,B96,C14,C17,C27,C29,C33,C34,C36,C37,C41,C45,C47,C52,C58,C70,C71,C74,C76,C80,C85,C87,D7
lof_cds	Chr1	51466227	TGC	T	INDEL	2bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	61	A1,A11,A24,B1,B101,B102,B113,B118,B120,B129,B132,B133,B139,B140,B2,B24,B27,B29,B32,B33,B34,B35,B36,B37,B40,B42,B43,B52,B54,B56,B62,B69,B7,B70,B72,B74,B76,B9,B94,B96,C14,C17,C27,C29,C33,C34,C36,C37,C41,C45,C47,C52,C58,C70,C71,C74,C76,C80,C85,C87,D7
lof_cds	Chr1	51466259	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	6	A21,A6,B3,B49,C22,C77
typical_cds_rare	Chr1	51466280	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	3	B128,B15,C82
typical_cds_rare	Chr1	51466378	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	4	A2,B71,C27,D9
typical_cds_rare	Chr1	51466395	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	D11
typical_cds_rare	Chr1	51466414	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	2	A2,B71
typical_cds_rare	Chr1	51466466	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	4	A2,B71,C21,C27
typical_cds_rare	Chr1	51466467	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	4	A2,B71,C21,C27
typical_cds_rare	Chr1	51466499	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	5	B26,B44,B85,C2,C39
lof_cds	Chr1	51466583	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	D6
typical_cds_rare	Chr1	51466583	C	CT	INDEL	1bp_insertion	CDS_variant	LOC130991539	SmilChr01G003276	130991539	rna-XM_057915818.1	1	D6