source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	52721771	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	17	B107,B120,B128,B22,B29,B3,B4,B67,B7,B72,B89,C29,C30,C31,C34,C47,C86
typical_cds_rare	Chr1	52721783	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	B15,B2,B90
typical_cds_rare	Chr1	52721788	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	B38,B39,C72
lof_cds	Chr1	52721802	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	5	A15,B37,B65,C43,C80
typical_cds_rare	Chr1	52721802	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	5	A15,B37,B65,C43,C80
lof_cds	Chr1	52721808	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	8	B107,B29,B3,B7,B72,C29,C34,C47
lof_cds	Chr1	52721853	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	8	A22,B128,B3,B4,B7,B72,C30,C47
lof_cds	Chr1	52721864	ACC	A	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	8	B128,B3,B4,B7,B72,C29,C30,C47
lof_cds	Chr1	52721887	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	2	C22,C68
typical_cds_rare	Chr1	52721887	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	2	C22,C68
typical_cds_rare	Chr1	52721934	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	B95,C15,C26
typical_cds_rare	Chr1	52721940	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	2	B129,C15
lof_cds	Chr1	52721954	AAT	A	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	10	A13,A7,B10,B115,B69,B87,C56,C75,D7,D9
typical_cds_rare	Chr1	52721968	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	5	A10,A3,B40,C41,C45
lof_cds	Chr1	52721980	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	8	A13,A23,A25,A9,B129,C15,C4,D1
typical_cds_rare	Chr1	52722063	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	1	B129
lof_cds	Chr1	52722067	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	197	A1,A10,A11,A13,A14,A16,A18,A19,A2,A21,A23,A24,A3,A4,A6,A7,A8,A9,B10,B100,B102,B103,B104,B105,B108,B110,B111,B113,B114,B115,B117,B118,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B13,B131,B132,B133,B134,B135,B136,B137,B138,B14,B140,B15,B16,B17,B18,B20,B23,B26,B27,B29,B3,B30,B31,B32,B33,B35,B37,B38,B39,B41,B42,B43,B46,B47,B48,B49,B5,B50,B51,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B68,B69,B7,B71,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B85,B86,B87,B88,B89,B90,B91,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C18,C2,C20,C22,C23,C24,C26,C27,C28,C3,C30,C33,C35,C36,C37,C4,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C53,C54,C56,C58,C59,C6,C61,C62,C63,C65,C67,C69,C7,C70,C71,C72,C73,C75,C76,C77,C78,C79,C8,C80,C81,C85,C86,D1,D10,D11,D2,D4,D6,D7,D8,D9
lof_cds	Chr1	52722071	A	AGG	INDEL	2bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	105	A1,A10,A14,A16,A18,A19,A2,A23,A3,A4,A6,A8,B102,B104,B111,B113,B114,B118,B12,B131,B132,B134,B138,B14,B140,B23,B26,B27,B32,B33,B37,B38,B39,B42,B43,B46,B48,B49,B5,B50,B51,B54,B55,B56,B57,B6,B63,B66,B69,B7,B71,B76,B77,B78,B79,B8,B82,B85,B87,B91,B95,B96,B97,B99,C1,C10,C13,C14,C15,C18,C23,C24,C28,C33,C35,C36,C37,C4,C41,C42,C45,C50,C52,C58,C59,C6,C61,C63,C67,C7,C70,C71,C72,C75,C76,C77,C8,D1,D11,D2,D4,D6,D7,D8,D9
lof_cds	Chr1	52722083	TAG	T	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	1	A21
typical_cds_rare	Chr1	52722083	TAG	T	INDEL	2bp_deletion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	1	A21
lof_cds	Chr1	52722115	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	1	C41
typical_cds_rare	Chr1	52722115	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	1	C41
lof_cds	Chr1	52722118	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	1	C41
typical_cds_rare	Chr1	52722118	GC	G	INDEL	1bp_deletion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	1	C41
lof_cds	Chr1	52722236	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	B13,B66,D10
typical_cds_rare	Chr1	52722236	C	CG	INDEL	1bp_insertion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	B13,B66,D10
typical_cds_rare	Chr1	52722245	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	2	B73,C41
lof_cds	Chr1	52722271	T	TGG	INDEL	2bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	44	A10,A20,A22,A25,B105,B107,B12,B120,B128,B129,B130,B139,B17,B2,B20,B22,B29,B3,B40,B53,B64,B69,B7,B72,B89,B90,B92,B93,C2,C26,C30,C31,C32,C35,C45,C47,C49,C60,C62,C68,C86,C87,D10,D11
lof_cds	Chr1	52722329	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	200	A1,A10,A11,A13,A16,A18,A19,A2,A20,A22,A23,A24,A25,A3,A4,A5,A8,A9,B1,B100,B102,B103,B104,B105,B106,B107,B109,B111,B113,B114,B118,B12,B120,B121,B122,B123,B124,B126,B127,B128,B129,B13,B130,B131,B132,B134,B135,B138,B139,B14,B140,B15,B17,B18,B2,B20,B21,B22,B23,B25,B26,B27,B29,B3,B30,B31,B35,B36,B38,B39,B40,B41,B42,B43,B44,B47,B48,B49,B5,B52,B53,B54,B55,B56,B57,B58,B6,B60,B63,B64,B65,B66,B68,B69,B7,B70,B71,B72,B74,B75,B76,B77,B8,B82,B83,B84,B85,B86,B87,B88,B89,B90,B91,B92,B94,B95,B96,B97,B98,B99,C1,C11,C14,C15,C16,C17,C18,C2,C20,C21,C24,C25,C26,C27,C28,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C65,C67,C68,C7,C70,C71,C72,C73,C75,C77,C78,C79,C8,C80,C81,C84,C85,C86,C87,C9,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
lof_cds	Chr1	52722352	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	123	A1,A10,A11,A13,A16,A18,A19,A2,A20,A23,A3,A4,A5,A8,B1,B100,B104,B105,B109,B114,B118,B12,B121,B128,B129,B13,B130,B135,B138,B140,B16,B18,B2,B21,B23,B26,B27,B29,B31,B36,B38,B39,B40,B41,B47,B48,B49,B5,B54,B55,B56,B57,B6,B60,B63,B65,B66,B68,B70,B71,B75,B76,B77,B78,B8,B84,B89,B91,B95,B96,B97,C1,C14,C15,C16,C17,C18,C2,C24,C25,C26,C27,C28,C32,C34,C35,C36,C38,C4,C40,C41,C42,C43,C45,C46,C47,C48,C50,C54,C57,C58,C60,C61,C65,C68,C7,C70,C71,C72,C78,C79,C8,C80,C86,C9,D10,D11,D2,D3,D4,D5,D7,D8
lof_cds	Chr1	52722354	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	171	A1,A10,A13,A16,A18,A19,A2,A20,A22,A23,A24,A25,A3,A4,A5,A8,A9,B1,B100,B102,B103,B104,B105,B106,B109,B111,B113,B114,B118,B12,B120,B121,B123,B124,B126,B127,B128,B129,B13,B130,B131,B132,B134,B135,B138,B14,B140,B16,B17,B18,B2,B20,B21,B22,B23,B25,B26,B27,B29,B3,B31,B35,B36,B38,B39,B4,B40,B41,B42,B43,B47,B48,B49,B5,B53,B55,B56,B57,B58,B60,B63,B64,B65,B66,B68,B69,B70,B71,B74,B75,B76,B77,B78,B8,B82,B84,B85,B86,B87,B89,B90,B91,B92,B94,B95,B96,B97,B98,C1,C14,C15,C16,C17,C18,C2,C20,C24,C25,C26,C27,C28,C3,C31,C32,C34,C35,C38,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C50,C54,C55,C56,C57,C58,C60,C61,C62,C65,C68,C7,C70,C71,C72,C73,C75,C78,C79,C8,C80,C84,C86,C87,C9,D10,D11,D2,D3,D4,D5,D7,D8,D9
lof_cds	Chr1	52722493	A	AGG	INDEL	2bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	B51,C28,C37
typical_cds_rare	Chr1	52722493	A	AGG	INDEL	2bp_insertion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	B51,C28,C37
lof_cds	Chr1	52722495	GTT	G	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	24	B105,B106,B109,B12,B130,B132,B16,B17,B2,B4,B40,B69,B75,B78,B93,C12,C2,C32,C48,C60,C68,C8,C86,D10
lof_cds	Chr1	52722535	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	5	A14,B108,B28,B59,C38
typical_cds_rare	Chr1	52722535	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	5	A14,B108,B28,B59,C38
lof_cds	Chr1	52722539	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	5	A14,B108,B28,B59,C38
typical_cds_rare	Chr1	52722539	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	5	A14,B108,B28,B59,C38
typical_cds_rare	Chr1	52722547	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	5	A14,B108,B28,B59,C38
typical_cds_rare	Chr1	52722570	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	4	A24,B115,B57,C53
typical_cds_rare	Chr1	52722621	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	1	B104
typical_cds_rare	Chr1	52722716	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	1	C53
typical_cds_rare	Chr1	52722794	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	2	B112,C6
lof_cds	Chr1	52722807	T	TGG	INDEL	2bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	2	B73,C41
typical_cds_rare	Chr1	52722807	T	TGG	INDEL	2bp_insertion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	2	B73,C41
lof_cds	Chr1	52722808	TAC	T	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	2	B73,C41
typical_cds_rare	Chr1	52722808	TAC	T	INDEL	2bp_deletion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	2	B73,C41
lof_cds	Chr1	52722947	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	6	A14,A6,B28,B59,C38,C75
lof_cds	Chr1	52722965	G	GTA	INDEL	2bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	6	B137,B25,B57,B62,B86,C18
lof_cds	Chr1	52722992	TCG	T	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	7	B108,B137,B25,B57,B62,B86,C18
lof_cds	Chr1	52723088	ACT	A	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	15	A10,B113,B126,B137,B25,B50,B53,B55,B57,B62,B72,B73,B86,C18,C62
lof_cds	Chr1	52723102	GGA	G	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	158	A10,A11,A13,A15,A16,A19,A20,A21,A22,A24,A25,A3,A4,A5,A6,A7,A9,B10,B101,B102,B103,B106,B108,B109,B111,B113,B114,B115,B117,B119,B121,B122,B123,B124,B125,B127,B129,B131,B132,B133,B134,B136,B137,B14,B140,B15,B17,B19,B2,B20,B21,B23,B25,B26,B28,B29,B31,B33,B34,B35,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B49,B50,B53,B55,B57,B58,B60,B61,B62,B64,B67,B69,B72,B73,B74,B80,B81,B82,B83,B84,B85,B86,B87,B88,B90,B91,B92,B93,B94,B95,B98,B99,C1,C11,C12,C13,C14,C16,C20,C21,C22,C23,C24,C25,C26,C27,C28,C3,C35,C36,C39,C41,C43,C44,C45,C46,C48,C49,C53,C55,C56,C57,C6,C60,C61,C62,C63,C64,C65,C66,C69,C7,C70,C72,C73,C75,C77,C79,C81,C82,C83,C84,C85,C87,D10,D7,D9
lof_cds	Chr1	52723106	T	TAC	INDEL	2bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	158	A10,A11,A13,A15,A16,A19,A20,A21,A22,A24,A25,A3,A4,A5,A6,A7,A9,B10,B101,B102,B103,B106,B108,B109,B111,B113,B114,B115,B117,B119,B121,B122,B123,B124,B125,B127,B129,B131,B132,B133,B134,B136,B137,B14,B140,B15,B17,B19,B2,B20,B21,B23,B25,B26,B28,B29,B31,B33,B34,B35,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B49,B50,B53,B55,B57,B58,B60,B61,B62,B64,B67,B69,B72,B73,B74,B80,B81,B82,B83,B84,B85,B86,B87,B88,B90,B91,B92,B93,B94,B95,B98,B99,C1,C11,C12,C13,C14,C16,C20,C21,C22,C23,C24,C25,C26,C27,C28,C3,C35,C36,C39,C41,C43,C44,C45,C46,C48,C49,C53,C55,C56,C57,C6,C60,C61,C62,C63,C64,C65,C66,C69,C7,C70,C72,C73,C75,C77,C79,C81,C82,C83,C84,C85,C87,D10,D7,D9
lof_cds	Chr1	52723163	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	5	B106,B129,B4,C36,C48
typical_cds_rare	Chr1	52723163	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	5	B106,B129,B4,C36,C48
lof_cds	Chr1	52723168	ATC	A	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	B113,B72,B73
typical_cds_rare	Chr1	52723168	ATC	A	INDEL	2bp_deletion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	B113,B72,B73
typical_cds_rare	Chr1	52723174	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	1	B73
lof_cds	Chr1	52723180	GTC	G	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	A5,C61,C78
typical_cds_rare	Chr1	52723180	GTC	G	INDEL	2bp_deletion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	A5,C61,C78
lof_cds	Chr1	52723227	GTC	G	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	2	A10,A3
typical_cds_rare	Chr1	52723227	GTC	G	INDEL	2bp_deletion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	2	A10,A3
lof_cds	Chr1	52723230	AAC	A	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	2	A10,A3
typical_cds_rare	Chr1	52723230	AAC	A	INDEL	2bp_deletion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	2	A10,A3
typical_cds_rare	Chr1	52723261	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	1	B23
typical_cds_rare	Chr1	52723280	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	A5,C61,C78
lof_cds	Chr1	52723282	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	98	A13,A16,A19,A22,A24,A4,A5,A7,A8,A9,B1,B10,B102,B104,B110,B111,B112,B113,B115,B117,B119,B122,B123,B125,B126,B127,B129,B130,B131,B134,B137,B14,B140,B16,B19,B21,B23,B25,B29,B32,B33,B38,B39,B42,B43,B46,B47,B50,B55,B57,B60,B63,B66,B67,B7,B70,B72,B80,B82,B84,B86,B87,B88,B90,B91,B92,B98,B99,C10,C16,C20,C25,C28,C3,C30,C31,C33,C44,C45,C53,C57,C6,C61,C62,C65,C69,C7,C72,C73,C78,C82,C84,C85,C87,C9,D10,D6,D7
typical_cds_rare	Chr1	52723303	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	B129,B4,C48
lof_cds	Chr1	52723345	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	4	A3,B73,C41,D10
typical_cds_rare	Chr1	52723345	G	GT	INDEL	1bp_insertion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	4	A3,B73,C41,D10
lof_cds	Chr1	52723386	TCA	T	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	24	A20,A25,A3,B114,B128,B132,B15,B20,B40,B44,B53,B55,B64,B69,B73,B82,C11,C12,C18,C41,C49,C62,C69,D10
lof_cds	Chr1	52723388	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	70	A10,A11,A13,A21,A22,A24,A3,A6,B1,B103,B106,B107,B108,B109,B113,B119,B120,B122,B137,B139,B17,B19,B2,B21,B22,B29,B3,B31,B33,B34,B35,B4,B50,B60,B62,B67,B7,B72,B74,B89,B90,B92,B93,C12,C14,C23,C26,C28,C29,C30,C31,C36,C44,C45,C47,C48,C55,C56,C57,C60,C62,C65,C66,C69,C70,C77,C79,C86,C87,D10
lof_cds	Chr1	52723414	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	24	A20,A25,A3,B114,B128,B132,B15,B20,B40,B44,B53,B55,B64,B69,B73,B82,C11,C12,C18,C41,C49,C62,C69,D10
lof_cds	Chr1	52723508	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	B140,C20,D7
typical_cds_rare	Chr1	52723508	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	B140,C20,D7
lof_cds	Chr1	52723528	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	42	A13,A15,A3,B102,B106,B108,B109,B110,B122,B123,B137,B14,B140,B21,B31,B32,B39,B42,B49,B61,B82,B84,B87,B88,B90,B93,B98,C13,C14,C44,C48,C56,C57,C67,C7,C70,C77,C79,C82,C85,C87,D10
lof_cds	Chr1	52723530	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	42	A13,A15,A3,B102,B106,B108,B109,B110,B122,B123,B137,B14,B140,B21,B31,B32,B39,B42,B49,B61,B82,B84,B87,B88,B90,B93,B98,C13,C14,C44,C48,C56,C57,C67,C7,C70,C77,C79,C82,C85,C87,D10
lof_cds	Chr1	52723535	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	A5,C61,C78
typical_cds_rare	Chr1	52723535	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	A5,C61,C78
lof_cds	Chr1	52723613	A	ATT	INDEL	2bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	B40,C62,C69
typical_cds_rare	Chr1	52723613	A	ATT	INDEL	2bp_insertion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	3	B40,C62,C69
lof_cds	Chr1	52723615	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	26	A13,B100,B103,B105,B106,B109,B12,B130,B139,B16,B68,B75,B78,B93,C2,C25,C32,C44,C56,C68,C79,C8,C86,C87,D10,D4
lof_cds	Chr1	52723625	GTT	G	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	21	A13,B103,B109,B114,B122,B139,B21,B31,B40,B93,C25,C44,C56,C57,C62,C69,C79,C82,C86,C87,D10
lof_cds	Chr1	52723628	G	GAC	INDEL	2bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	21	A13,B103,B109,B114,B122,B139,B21,B31,B40,B69,B93,C25,C44,C56,C57,C62,C69,C79,C86,C87,D10
typical_cds_rare	Chr1	52723630	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	5	B114,B40,B69,C62,C69
typical_cds_rare	Chr1	52723662	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	4	A20,B137,B20,B64
lof_cds	Chr1	52723684	A	ATG	INDEL	2bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	1	B73
typical_cds_rare	Chr1	52723684	A	ATG	INDEL	2bp_insertion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	1	B73
lof_cds	Chr1	52723698	AAC	A	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	7	A21,A8,C1,C16,C19,C35,C82
typical_cds_rare	Chr1	52723702	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	1	B73
lof_cds	Chr1	52723979	ACC	A	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	8	A14,A6,B108,B28,B59,C23,C38,C75
lof_cds	Chr1	52724015	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	25	A13,B100,B103,B105,B106,B109,B12,B130,B139,B16,B68,B75,B78,B93,C2,C32,C44,C56,C68,C79,C8,C86,C87,D10,D4
lof_cds	Chr1	52724093	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	173	A10,A11,A13,A14,A15,A16,A18,A19,A21,A22,A24,A25,A3,A4,A5,A6,A7,A9,B1,B10,B101,B102,B103,B107,B108,B110,B111,B112,B113,B115,B117,B119,B120,B121,B122,B123,B125,B126,B127,B128,B132,B133,B134,B136,B137,B139,B14,B140,B15,B17,B19,B2,B20,B21,B22,B23,B25,B26,B28,B29,B3,B30,B31,B32,B33,B34,B35,B38,B39,B4,B40,B41,B42,B44,B45,B47,B49,B50,B51,B53,B55,B57,B58,B59,B60,B61,B62,B64,B67,B69,B7,B72,B73,B74,B80,B81,B83,B84,B85,B86,B87,B88,B89,B90,B91,B92,B94,B95,B98,B99,C1,C11,C12,C13,C14,C16,C18,C19,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C34,C35,C36,C38,C39,C41,C43,C44,C45,C47,C49,C53,C55,C56,C57,C6,C60,C61,C62,C63,C64,C65,C66,C67,C69,C7,C70,C72,C73,C75,C77,C79,C81,C82,C83,C84,C85,C86,C87,D10,D7,D9
lof_cds	Chr1	52724100	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	1	B23
typical_cds_rare	Chr1	52724100	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	1	B23
lof_cds	Chr1	52724116	CGT	C	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	179	A10,A11,A13,A14,A15,A16,A18,A19,A20,A21,A22,A24,A25,A3,A4,A5,A6,A7,A9,B1,B10,B101,B102,B103,B106,B107,B108,B110,B111,B112,B113,B114,B115,B117,B119,B120,B121,B122,B123,B125,B126,B127,B128,B129,B132,B133,B134,B136,B137,B139,B14,B140,B15,B17,B19,B2,B20,B21,B22,B25,B26,B28,B29,B3,B30,B31,B32,B33,B34,B35,B38,B39,B4,B40,B41,B42,B44,B45,B46,B47,B49,B50,B51,B53,B55,B57,B58,B59,B60,B61,B62,B64,B67,B69,B7,B72,B73,B74,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B90,B91,B92,B94,B95,B98,B99,C1,C11,C12,C13,C14,C16,C18,C19,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C34,C35,C36,C38,C39,C41,C43,C44,C45,C47,C48,C49,C53,C55,C56,C57,C6,C60,C61,C62,C63,C64,C65,C66,C67,C69,C7,C70,C72,C73,C75,C77,C79,C81,C82,C83,C84,C85,C86,C87,D10,D7,D9
lof_cds	Chr1	52724119	A	ACT	INDEL	2bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	179	A10,A11,A13,A14,A15,A16,A18,A19,A20,A21,A22,A24,A25,A3,A4,A5,A6,A7,A9,B1,B10,B101,B102,B103,B106,B107,B108,B110,B111,B112,B113,B114,B115,B117,B119,B120,B121,B122,B123,B125,B126,B127,B128,B129,B132,B133,B134,B136,B137,B139,B14,B140,B15,B17,B19,B2,B20,B21,B22,B25,B26,B28,B29,B3,B30,B31,B32,B33,B34,B35,B38,B39,B4,B40,B41,B42,B44,B45,B46,B47,B49,B50,B51,B53,B55,B57,B58,B59,B60,B61,B62,B64,B67,B69,B7,B72,B73,B74,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B90,B91,B92,B94,B95,B98,B99,C1,C11,C12,C13,C14,C16,C18,C19,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C34,C35,C36,C38,C39,C41,C43,C44,C45,C47,C48,C49,C53,C55,C56,C57,C6,C60,C61,C62,C63,C64,C65,C66,C67,C69,C7,C70,C72,C73,C75,C77,C79,C81,C82,C83,C84,C85,C86,C87,D10,D7,D9
typical_cds_rare	Chr1	52724125	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	2	B73,C41
lof_cds	Chr1	52724245	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	72	A10,A11,A13,A20,A22,A25,A3,B1,B103,B105,B106,B107,B109,B12,B120,B128,B129,B130,B132,B139,B15,B16,B17,B2,B20,B22,B28,B3,B35,B4,B40,B53,B62,B64,B67,B68,B69,B7,B72,B74,B75,B78,B89,B90,B92,B93,C12,C18,C2,C25,C26,C29,C31,C32,C34,C35,C36,C44,C45,C47,C48,C49,C56,C60,C62,C68,C79,C8,C86,C87,D10,D4
typical_cds_rare	Chr1	52724305	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	4	B13,B49,C86,D4
lof_cds	Chr1	52724306	T	TAA	INDEL	2bp_insertion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	2	B49,C86
typical_cds_rare	Chr1	52724306	T	TAA	INDEL	2bp_insertion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	2	B49,C86
typical_cds_rare	Chr1	52724524	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	1	D11
lof_cds	Chr1	52724537	ACG	A	INDEL	2bp_deletion	frameshift_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	62	A15,A20,A25,B101,B108,B112,B114,B117,B120,B121,B122,B128,B131,B132,B137,B15,B20,B30,B38,B40,B44,B45,B46,B47,B49,B50,B51,B53,B55,B58,B61,B62,B64,B74,B81,B84,B90,B92,B93,B94,C1,C11,C12,C13,C16,C18,C19,C22,C3,C45,C49,C62,C64,C65,C66,C69,C72,C75,C77,C81,C82,C85
typical_cds_rare	Chr1	52724569	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	5	C27,C43,C5,C59,C71
typical_cds_rare	Chr1	52724599	T	TG	INDEL	1bp_insertion	CDS_variant	LOC131009885	SmilChr01G003405	131009885	rna-XM_057937291.1	5	A14,B59,C34,C38,D11