source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr1	59601300	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	1	C25
lof_cds	Chr1	59601306	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	81	A11,A14,A16,A23,A24,A6,A7,B100,B108,B109,B122,B123,B132,B140,B15,B16,B19,B20,B23,B25,B30,B31,B34,B35,B36,B38,B40,B42,B44,B47,B48,B50,B53,B57,B58,B59,B6,B65,B69,B72,B75,B77,B79,B81,B83,B88,B89,B91,B93,B94,C12,C16,C17,C19,C25,C35,C41,C43,C47,C49,C50,C51,C54,C56,C57,C60,C68,C70,C71,C75,C76,C77,C82,C84,C87,C9,D1,D2,D3,D6,D8
lof_cds	Chr1	59601308	C	CAA	INDEL	2bp_insertion	frameshift_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	82	A11,A14,A16,A23,A24,A6,A7,B100,B108,B109,B122,B123,B132,B140,B15,B16,B19,B20,B23,B25,B30,B31,B34,B35,B36,B38,B40,B42,B44,B47,B48,B50,B53,B57,B58,B59,B6,B65,B69,B72,B75,B77,B79,B81,B83,B88,B89,B91,B93,B94,C12,C16,C17,C19,C20,C25,C35,C41,C43,C47,C49,C50,C51,C54,C56,C57,C60,C68,C70,C71,C75,C76,C77,C82,C84,C87,C9,D1,D2,D3,D6,D8
lof_cds	Chr1	59601323	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	80	A11,A14,A23,A24,A6,B100,B108,B109,B122,B123,B132,B14,B19,B20,B23,B25,B31,B34,B35,B36,B38,B40,B42,B44,B45,B47,B48,B50,B53,B58,B59,B6,B65,B72,B75,B77,B79,B81,B88,B89,B91,B93,B94,B97,C12,C17,C19,C20,C22,C25,C29,C35,C41,C43,C45,C46,C47,C49,C50,C51,C52,C56,C57,C59,C60,C68,C70,C71,C75,C76,C77,C82,C87,C9,D1,D10,D11,D2,D6,D8
lof_cds	Chr1	59601324	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	90	A11,A14,A16,A23,A24,A6,A7,B100,B108,B109,B122,B123,B132,B136,B14,B140,B16,B19,B20,B23,B25,B30,B31,B34,B35,B36,B38,B40,B42,B44,B45,B47,B48,B50,B53,B58,B59,B6,B65,B72,B75,B77,B79,B81,B83,B88,B89,B91,B93,B94,B97,C12,C16,C17,C19,C20,C22,C25,C29,C35,C41,C43,C45,C46,C47,C49,C50,C51,C52,C54,C56,C57,C59,C60,C68,C70,C71,C75,C76,C77,C82,C84,C87,C9,D1,D10,D11,D2,D6,D8
lof_cds	Chr1	59601326	GTC	G	INDEL	2bp_deletion	frameshift_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	90	A11,A14,A16,A23,A24,A6,A7,B100,B108,B109,B122,B123,B132,B136,B14,B140,B16,B19,B20,B23,B25,B30,B31,B34,B35,B36,B38,B40,B42,B44,B45,B47,B48,B50,B53,B58,B59,B6,B65,B72,B75,B77,B79,B81,B83,B88,B89,B91,B93,B94,B97,C12,C16,C17,C19,C20,C22,C25,C29,C35,C41,C43,C45,C46,C47,C49,C50,C51,C52,C54,C56,C57,C59,C60,C68,C70,C71,C75,C76,C77,C82,C84,C87,C9,D1,D10,D11,D2,D6,D8
lof_cds	Chr1	59601380	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	20	A7,B109,B136,B138,B26,B57,B62,B63,B80,B97,C10,C16,C20,C76,C80,C84,C86,C87,D11,D3
lof_cds	Chr1	59601439	G	GGT	INDEL	2bp_insertion	frameshift_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	131	A11,A14,A16,A2,A21,A24,A6,A7,A8,A9,B100,B103,B109,B113,B115,B12,B120,B121,B122,B123,B129,B130,B131,B132,B136,B137,B138,B140,B15,B17,B21,B25,B26,B27,B28,B31,B32,B35,B36,B38,B40,B41,B42,B43,B44,B45,B47,B49,B52,B53,B54,B56,B57,B58,B62,B63,B65,B69,B72,B73,B75,B77,B79,B80,B81,B83,B84,B86,B9,B91,B93,B95,B96,B97,B98,C10,C12,C16,C17,C20,C23,C27,C29,C3,C31,C32,C37,C39,C40,C41,C44,C45,C46,C49,C5,C50,C53,C54,C55,C56,C57,C58,C59,C60,C61,C62,C63,C66,C67,C68,C70,C72,C73,C76,C77,C78,C8,C80,C82,C83,C84,C85,C86,C87,C9,D11,D2,D3,D4,D8,D9
lof_cds	Chr1	59601450	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	133	A11,A14,A16,A2,A21,A24,A6,A7,A8,A9,B100,B103,B108,B109,B113,B115,B12,B120,B121,B122,B123,B129,B130,B131,B132,B136,B137,B138,B140,B15,B17,B21,B25,B26,B27,B28,B31,B32,B35,B36,B38,B40,B41,B42,B43,B44,B45,B47,B49,B52,B53,B54,B56,B57,B58,B62,B63,B65,B69,B72,B73,B75,B76,B77,B79,B80,B81,B83,B84,B86,B9,B91,B93,B95,B96,B97,B98,C10,C12,C16,C17,C20,C23,C27,C29,C3,C31,C32,C37,C39,C40,C41,C44,C45,C46,C49,C5,C50,C53,C54,C55,C56,C57,C58,C59,C60,C61,C62,C63,C66,C67,C68,C70,C72,C73,C76,C77,C78,C8,C80,C82,C83,C84,C85,C86,C87,C9,D11,D2,D3,D4,D8,D9
lof_cds	Chr1	59601472	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	121	A1,A11,A16,A2,A24,A6,A7,A8,A9,B100,B103,B108,B109,B113,B115,B12,B120,B121,B122,B123,B129,B130,B131,B132,B136,B137,B138,B15,B17,B21,B25,B26,B27,B28,B31,B32,B35,B36,B38,B40,B41,B42,B43,B44,B45,B47,B49,B52,B53,B54,B56,B57,B58,B62,B63,B65,B69,B72,B73,B75,B76,B77,B79,B80,B81,B83,B84,B9,B93,B96,B97,C10,C16,C17,C20,C23,C27,C29,C3,C31,C32,C37,C39,C40,C41,C44,C45,C46,C49,C5,C50,C53,C54,C55,C56,C57,C58,C59,C60,C61,C62,C63,C66,C67,C68,C70,C72,C76,C78,C80,C82,C84,C85,C86,C87,C9,D11,D2,D4,D8,D9
lof_cds	Chr1	59601482	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	111	A1,A11,A14,A16,A2,A24,A6,A7,A8,A9,B100,B103,B108,B109,B113,B115,B12,B120,B121,B123,B129,B130,B131,B136,B137,B15,B17,B21,B25,B26,B27,B31,B32,B36,B38,B40,B41,B42,B43,B44,B45,B47,B49,B52,B53,B54,B56,B58,B62,B63,B65,B69,B72,B73,B75,B76,B77,B79,B80,B81,B83,B84,B9,B93,B96,B97,C10,C16,C17,C20,C23,C27,C29,C3,C31,C32,C37,C39,C40,C41,C44,C46,C49,C50,C53,C54,C55,C56,C57,C58,C59,C60,C61,C62,C63,C66,C67,C68,C70,C72,C76,C78,C80,C82,C84,C85,C86,C9,D2,D4,D9
typical_cds_rare	Chr1	59601551	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	1	B137
typical_cds_rare	Chr1	59601957	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	3	A22,A8,C22
typical_cds_rare	Chr1	59602081	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	2	C3,D11
typical_cds_rare	Chr1	59602084	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	2	B138,C71
typical_cds_rare	Chr1	59602501	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	4	A3,B21,B25,C7
typical_cds_rare	Chr1	59603167	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	4	A2,B115,B20,C76
typical_cds_rare	Chr1	59603182	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130999525	SmilChr01G004109	130999525	rna-XM_057925077.1	4	A2,B115,B20,C76