source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	66621759	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	C66
typical_cds_rare	Chr1	66621759	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	C66
typical_cds_rare	Chr1	66621762	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	C66
typical_cds_rare	Chr1	66623068	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	B66
typical_cds_rare	Chr1	66623176	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	C50
lof_cds	Chr1	66623421	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	140	A11,A14,A15,A16,A19,A21,A24,A25,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B105,B107,B11,B110,B112,B113,B115,B117,B122,B124,B127,B128,B132,B133,B134,B135,B136,B137,B17,B2,B21,B22,B23,B26,B27,B30,B32,B33,B34,B35,B36,B41,B42,B43,B44,B46,B49,B5,B50,B51,B52,B53,B54,B56,B57,B58,B6,B60,B63,B64,B66,B67,B68,B7,B70,B71,B72,B74,B76,B79,B8,B82,B83,B84,B86,B87,B88,B89,B9,B90,B92,B93,B95,B97,B98,C1,C11,C12,C13,C15,C17,C18,C19,C2,C20,C26,C27,C28,C30,C33,C36,C38,C4,C40,C41,C42,C44,C50,C51,C56,C58,C59,C6,C60,C62,C64,C65,C66,C67,C69,C71,C74,C8,C82,C83,C84,C86,D10,D4,D5,D8,D9
lof_cds	Chr1	66623426	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	142	A11,A14,A15,A16,A19,A21,A24,A25,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B105,B107,B11,B110,B112,B113,B115,B117,B122,B124,B127,B128,B13,B132,B133,B134,B135,B136,B137,B17,B2,B21,B22,B23,B26,B27,B30,B32,B33,B34,B35,B36,B41,B42,B43,B44,B46,B49,B5,B50,B51,B52,B53,B54,B56,B57,B58,B6,B60,B63,B64,B66,B67,B68,B7,B70,B71,B72,B74,B76,B79,B8,B82,B83,B84,B86,B87,B88,B89,B9,B90,B92,B93,B95,B97,B98,C1,C11,C12,C13,C15,C17,C18,C19,C2,C20,C26,C27,C28,C30,C33,C36,C38,C4,C40,C41,C42,C44,C50,C51,C56,C58,C59,C6,C60,C62,C64,C65,C66,C67,C69,C71,C74,C77,C8,C82,C83,C84,C86,D10,D4,D5,D8,D9
lof_cds	Chr1	66623429	A	ACG	INDEL	2bp_insertion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	141	A11,A14,A15,A16,A19,A21,A24,A25,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B105,B107,B11,B110,B112,B113,B115,B117,B122,B124,B127,B128,B13,B132,B133,B134,B135,B136,B137,B17,B2,B22,B23,B26,B27,B30,B32,B33,B34,B35,B36,B41,B42,B43,B44,B46,B49,B5,B50,B51,B52,B53,B54,B56,B57,B58,B6,B60,B63,B64,B66,B67,B68,B7,B70,B71,B72,B74,B76,B79,B8,B82,B83,B84,B86,B87,B88,B89,B9,B90,B92,B93,B95,B97,B98,C1,C11,C12,C13,C15,C17,C18,C19,C2,C20,C26,C27,C28,C30,C33,C36,C38,C4,C40,C41,C42,C44,C50,C51,C56,C58,C59,C6,C60,C62,C64,C65,C66,C67,C69,C71,C74,C77,C8,C82,C83,C84,C86,D10,D4,D5,D8,D9
lof_cds	Chr1	66623442	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	C64
typical_cds_rare	Chr1	66623442	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	C64
typical_cds_rare	Chr1	66623603	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	2	C78,D1
typical_cds_rare	Chr1	66623995	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	3	B18,B29,C65
typical_cds_rare	Chr1	66624022	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	5	B125,B130,B18,C34,C65
lof_cds	Chr1	66624048	AGT	A	INDEL	2bp_deletion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	10	A2,B130,B139,B18,B26,B31,C34,C65,C69,C84
lof_cds	Chr1	66624053	T	TCC	INDEL	2bp_insertion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	11	A2,B125,B130,B139,B18,B26,B31,C34,C65,C69,C84
lof_cds	Chr1	66624063	A	AGT	INDEL	2bp_insertion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	11	A2,B113,B125,B130,B139,B18,B26,B31,C65,C69,C84
lof_cds	Chr1	66624065	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	11	A2,B113,B125,B130,B139,B18,B26,B31,C65,C69,C84
lof_cds	Chr1	66624079	C	CTG	INDEL	2bp_insertion	stop_gained,frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	10	A2,B125,B130,B139,B18,B26,C11,C65,C69,C84
lof_cds	Chr1	66624081	A	AGC	INDEL	2bp_insertion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	10	A2,B125,B130,B139,B18,B26,C11,C65,C69,C84
lof_cds	Chr1	66624116	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	B123
typical_cds_rare	Chr1	66624116	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	B123
typical_cds_rare	Chr1	66624132	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	C27
lof_cds	Chr1	66624288	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	3	B128,B140,C53
typical_cds_rare	Chr1	66624288	A	AC	INDEL	1bp_insertion	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	3	B128,B140,C53
typical_cds_rare	Chr1	66624295	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	4	B128,B140,B61,C53
typical_cds_rare	Chr1	66624297	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	5	A15,B128,B140,B61,C53
typical_cds_rare	Chr1	66624385	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	C5
typical_cds_rare	Chr1	66624403	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	4	A20,B108,B60,C48
typical_cds_rare	Chr1	66624427	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	B4
typical_cds_rare	Chr1	66624430	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	B4
typical_cds_rare	Chr1	66624436	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	B4
typical_cds_rare	Chr1	66624457	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	B4
typical_cds_rare	Chr1	66624484	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	B50
typical_cds_rare	Chr1	66624756	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	B111
typical_cds_rare	Chr1	66624771	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	2	B111,B48
lof_cds	Chr1	66625038	G	GAT	INDEL	2bp_insertion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	49	A1,A14,A21,A23,B1,B100,B101,B117,B12,B125,B127,B130,B134,B140,B31,B36,B41,B47,B55,B59,B71,B8,B83,B84,B90,B92,B97,B98,B99,C11,C2,C25,C29,C39,C41,C43,C46,C49,C58,C70,C72,C73,C79,C8,C83,C85,C87,D1,D10
lof_cds	Chr1	66625045	GCC	G	INDEL	2bp_deletion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	44	A14,A21,A23,B1,B100,B117,B12,B127,B130,B134,B140,B31,B36,B47,B55,B71,B8,B83,B84,B90,B92,B97,B98,B99,C11,C2,C25,C29,C33,C39,C41,C43,C46,C49,C58,C70,C72,C73,C8,C83,C85,C87,D1,D10
lof_cds	Chr1	66625149	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	81	A1,A10,A11,A14,A19,A21,A23,A3,A4,A7,A8,B1,B108,B109,B12,B120,B130,B133,B134,B16,B2,B22,B29,B30,B31,B33,B34,B35,B36,B4,B42,B43,B44,B47,B5,B50,B55,B57,B62,B66,B70,B71,B72,B8,B80,B81,B83,B84,B9,B91,B92,B93,B97,B98,B99,C19,C23,C24,C25,C26,C28,C33,C43,C49,C52,C58,C65,C70,C71,C72,C73,C75,C76,C78,C81,C82,C83,C84,C85,C86,D11
lof_cds	Chr1	66625154	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	88	A1,A10,A11,A14,A19,A21,A23,A3,A4,A7,A8,B1,B106,B108,B109,B12,B120,B128,B130,B133,B134,B16,B2,B21,B22,B29,B30,B31,B33,B34,B35,B36,B4,B42,B43,B44,B47,B5,B50,B55,B57,B62,B66,B70,B71,B72,B8,B80,B81,B83,B84,B86,B9,B91,B92,B93,B97,B98,B99,C19,C23,C24,C25,C26,C28,C33,C43,C45,C49,C52,C58,C65,C70,C71,C72,C73,C74,C75,C76,C78,C81,C82,C83,C84,C85,C86,D11,D7
lof_cds	Chr1	66625289	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	113	A1,A11,A14,A15,A19,A2,A20,A21,A3,A5,A7,A8,A9,B1,B10,B102,B106,B109,B110,B111,B113,B114,B117,B120,B130,B133,B135,B14,B140,B16,B19,B2,B21,B27,B29,B32,B34,B35,B4,B41,B42,B43,B44,B45,B46,B49,B5,B50,B52,B54,B63,B65,B68,B69,B7,B71,B72,B73,B74,B75,B77,B79,B8,B80,B81,B83,B86,B88,B9,B92,B98,C10,C11,C13,C18,C2,C22,C24,C25,C28,C33,C36,C38,C39,C4,C43,C45,C5,C52,C53,C54,C55,C58,C59,C63,C65,C68,C7,C71,C72,C74,C75,C76,C81,C82,C83,C85,C87,D1,D5,D7,D8,D9
lof_cds	Chr1	66625291	GGT	G	INDEL	2bp_deletion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	114	A1,A11,A14,A15,A19,A2,A20,A21,A3,A5,A7,A8,A9,B1,B10,B102,B106,B109,B110,B111,B113,B114,B117,B120,B128,B130,B133,B135,B14,B140,B16,B19,B2,B21,B27,B29,B32,B34,B35,B4,B41,B42,B43,B44,B45,B46,B49,B5,B50,B52,B54,B63,B65,B68,B69,B7,B71,B72,B73,B74,B75,B77,B79,B8,B80,B81,B83,B86,B88,B9,B92,B98,C10,C11,C13,C18,C2,C22,C24,C25,C28,C33,C36,C38,C39,C4,C43,C45,C5,C52,C53,C54,C55,C58,C59,C63,C65,C68,C7,C71,C72,C74,C75,C76,C81,C82,C83,C85,C87,D1,D5,D7,D8,D9
lof_cds	Chr1	66625310	C	CTT	INDEL	2bp_insertion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	18	B1,B10,B111,B32,B43,B46,B5,B50,B54,B72,B83,B92,B98,C18,C22,C4,C58,C87
typical_cds_rare	Chr1	66625319	GC	*	INDEL	1bp_deletion	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	3	A16,A4,C42
typical_cds_rare	Chr1	66625335	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	1	C5
lof_cds	Chr1	66625338	GCA	G	INDEL	2bp_deletion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	86	A11,A14,A15,A16,A21,A25,A3,A4,A5,A7,A8,A9,B1,B10,B102,B109,B113,B117,B128,B130,B132,B133,B135,B14,B140,B19,B2,B21,B27,B29,B32,B35,B36,B44,B45,B46,B5,B50,B52,B54,B63,B68,B71,B72,B77,B79,B8,B80,B81,B83,B88,B9,B91,B92,B98,B99,C11,C18,C21,C22,C24,C25,C31,C33,C36,C38,C39,C4,C42,C45,C53,C55,C58,C59,C61,C65,C67,C71,C74,C75,C76,C78,C81,C83,C85,D7
lof_cds	Chr1	66625341	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131005185	SmilChr01G004847	131005185	rna-XM_057932019.1	25	B120,B132,B134,B19,B32,B36,B41,B5,B74,B86,B91,B99,C10,C11,C25,C31,C55,C61,C67,C78,C8,C85,C87,D7,D9