source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	69924849	G	GCT	INDEL	2bp_insertion	frameshift_variant	LOC131005562	SmilChr01G005234	131005562	rna-XM_057932570.1,rna-XM_057932571.1	174	A1,A10,A11,A14,A16,A18,A19,A2,A20,A21,A23,A24,A25,A3,A4,A7,A9,B1,B10,B100,B102,B103,B105,B106,B108,B109,B11,B110,B111,B114,B117,B119,B120,B123,B125,B126,B127,B128,B130,B131,B132,B134,B136,B137,B139,B14,B15,B17,B18,B20,B22,B27,B3,B30,B31,B32,B34,B35,B36,B4,B41,B42,B45,B49,B51,B54,B57,B58,B6,B60,B62,B63,B67,B68,B69,B7,B70,B71,B75,B76,B78,B79,B80,B81,B83,B86,B87,B89,B90,B91,B93,B94,B96,B97,B98,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C20,C21,C22,C23,C25,C26,C27,C28,C30,C31,C33,C34,C36,C37,C38,C39,C4,C40,C41,C42,C43,C45,C46,C48,C49,C5,C50,C52,C53,C54,C55,C56,C58,C59,C6,C60,C61,C62,C63,C64,C65,C67,C68,C69,C7,C70,C72,C73,C75,C76,C79,C8,C80,C82,C83,C84,C85,C86,C87,D1,D10,D11,D2,D3,D5,D7,D8,D9
lof_cds	Chr1	69925597	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131005562	SmilChr01G005234	131005562	rna-XM_057932570.1,rna-XM_057932571.1,rna-XM_057932572.1	161	A1,A10,A11,A14,A16,A19,A2,A20,A23,A25,A3,A4,A7,A9,B10,B100,B102,B103,B105,B108,B109,B110,B111,B113,B114,B117,B119,B121,B123,B125,B126,B127,B128,B130,B131,B132,B134,B136,B137,B139,B14,B140,B15,B16,B17,B20,B22,B3,B30,B31,B32,B34,B35,B36,B42,B45,B47,B49,B50,B51,B54,B57,B58,B6,B60,B62,B67,B68,B70,B71,B73,B75,B76,B78,B79,B81,B83,B86,B87,B89,B90,B94,B96,B97,B98,C1,C10,C11,C12,C13,C15,C16,C17,C18,C19,C20,C21,C22,C23,C24,C25,C27,C28,C29,C30,C31,C32,C33,C34,C36,C37,C38,C39,C4,C40,C41,C42,C43,C46,C48,C49,C5,C50,C52,C53,C54,C55,C56,C58,C59,C6,C61,C62,C64,C65,C67,C68,C69,C7,C70,C72,C73,C75,C76,C79,C8,C80,C82,C83,C84,C85,C86,C87,D1,D11,D2,D3,D5,D7,D8,D9
lof_cds	Chr1	69925603	A	AG	INDEL	1bp_insertion	stop_gained,frameshift_variant	LOC131005562	SmilChr01G005234	131005562	rna-XM_057932570.1,rna-XM_057932571.1,rna-XM_057932572.1	161	A1,A10,A11,A14,A16,A19,A2,A20,A23,A25,A3,A4,A7,A9,B10,B100,B102,B103,B105,B108,B109,B110,B111,B113,B114,B117,B119,B121,B123,B125,B126,B127,B128,B130,B131,B132,B134,B136,B137,B139,B14,B140,B15,B16,B17,B20,B22,B3,B30,B31,B32,B34,B35,B36,B42,B45,B47,B49,B50,B51,B54,B57,B58,B6,B60,B62,B67,B68,B70,B71,B73,B75,B76,B78,B79,B81,B83,B86,B87,B89,B90,B94,B96,B97,B98,C1,C10,C11,C12,C13,C15,C16,C17,C18,C19,C20,C21,C22,C23,C24,C25,C27,C28,C29,C30,C31,C32,C33,C34,C36,C37,C38,C39,C4,C40,C41,C42,C43,C46,C48,C49,C5,C50,C52,C53,C54,C55,C56,C58,C59,C6,C61,C62,C64,C65,C67,C68,C69,C7,C70,C72,C73,C75,C76,C79,C8,C80,C82,C83,C84,C85,C86,C87,D1,D11,D2,D3,D5,D7,D8,D9
lof_cds	Chr1	69925662	ACT	A	INDEL	2bp_deletion	frameshift_variant	LOC131005562	SmilChr01G005234	131005562	rna-XM_057932570.1,rna-XM_057932571.1,rna-XM_057932572.1	172	A1,A10,A11,A14,A16,A18,A19,A2,A20,A21,A23,A25,A3,A4,A7,A9,B1,B10,B100,B102,B103,B105,B108,B109,B11,B110,B111,B114,B117,B119,B120,B121,B123,B125,B126,B127,B128,B130,B131,B132,B134,B136,B137,B14,B140,B15,B16,B17,B18,B20,B22,B3,B30,B31,B32,B34,B35,B36,B4,B41,B42,B45,B47,B49,B50,B51,B54,B57,B58,B6,B60,B62,B63,B67,B68,B69,B7,B70,B73,B75,B76,B78,B79,B81,B83,B86,B87,B89,B90,B91,B93,B94,B96,B97,B98,C1,C10,C11,C12,C13,C14,C15,C16,C18,C19,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C30,C31,C33,C34,C36,C37,C38,C39,C4,C41,C42,C43,C46,C48,C49,C5,C50,C52,C53,C54,C55,C56,C58,C59,C6,C60,C61,C62,C63,C64,C65,C68,C69,C7,C70,C72,C73,C75,C76,C79,C8,C80,C82,C83,C84,C85,C86,C87,D1,D10,D11,D2,D3,D5,D7,D8,D9
lof_cds	Chr1	69925665	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131005562	SmilChr01G005234	131005562	rna-XM_057932570.1,rna-XM_057932571.1,rna-XM_057932572.1	172	A1,A10,A11,A14,A16,A18,A19,A2,A20,A21,A23,A25,A3,A4,A7,A9,B1,B10,B100,B102,B103,B105,B108,B109,B11,B110,B111,B114,B117,B119,B120,B121,B123,B125,B126,B127,B128,B130,B131,B132,B134,B136,B137,B14,B140,B15,B16,B17,B18,B20,B22,B3,B30,B31,B32,B34,B35,B36,B4,B41,B42,B45,B47,B49,B50,B51,B54,B57,B58,B6,B60,B62,B63,B67,B68,B69,B7,B70,B73,B75,B76,B78,B79,B81,B83,B86,B87,B89,B90,B91,B93,B94,B96,B97,B98,C1,C10,C11,C12,C13,C14,C15,C16,C18,C19,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C30,C31,C33,C34,C36,C37,C38,C39,C4,C41,C42,C43,C46,C48,C49,C5,C50,C52,C53,C54,C55,C56,C58,C59,C6,C60,C61,C62,C63,C64,C65,C68,C69,C7,C70,C72,C73,C75,C76,C79,C8,C80,C82,C83,C84,C85,C86,C87,D1,D10,D11,D2,D3,D5,D7,D8,D9
lof_cds	Chr1	69925902	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131005562	SmilChr01G005234	131005562	rna-XM_057932570.1,rna-XM_057932571.1,rna-XM_057932572.1	157	A13,A15,A16,A19,A22,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B101,B103,B104,B105,B106,B107,B108,B109,B110,B111,B112,B115,B117,B118,B12,B121,B124,B129,B13,B130,B133,B135,B136,B137,B138,B139,B140,B15,B16,B17,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B32,B33,B35,B36,B37,B38,B39,B4,B40,B41,B43,B44,B46,B47,B48,B5,B50,B52,B53,B55,B56,B58,B59,B6,B60,B61,B62,B64,B65,B66,B68,B71,B72,B73,B74,B76,B77,B78,B79,B8,B82,B84,B85,B88,B9,B92,B94,B95,B97,B99,C1,C10,C17,C2,C20,C21,C24,C25,C29,C3,C32,C35,C37,C40,C41,C44,C46,C47,C51,C54,C57,C6,C62,C64,C66,C67,C68,C69,C7,C70,C71,C72,C74,C77,C78,C79,C81,C83,C84,C86,C87,C9,D1,D11,D3,D4,D6
lof_cds	Chr1	69925931	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131005562	SmilChr01G005234	131005562	rna-XM_057932570.1,rna-XM_057932571.1,rna-XM_057932572.1	1	B9
typical_cds_rare	Chr1	69925931	GC	G	INDEL	1bp_deletion	CDS_variant	LOC131005562	SmilChr01G005234	131005562	rna-XM_057932570.1,rna-XM_057932571.1,rna-XM_057932572.1	1	B9
typical_cds_rare	Chr1	69925961	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005562	SmilChr01G005234	131005562	rna-XM_057932570.1,rna-XM_057932571.1,rna-XM_057932572.1	1	B9
typical_cds_rare	Chr1	69925987	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005562	SmilChr01G005234	131005562	rna-XM_057932570.1,rna-XM_057932571.1,rna-XM_057932572.1	2	B104,B24
typical_cds_rare	Chr1	69926016	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005562	SmilChr01G005234	131005562	rna-XM_057932570.1,rna-XM_057932571.1,rna-XM_057932572.1	2	B104,B24
lof_cds	Chr1	69926025	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131005562	SmilChr01G005234	131005562	rna-XM_057932570.1,rna-XM_057932571.1,rna-XM_057932572.1	169	A1,A10,A11,A14,A18,A19,A2,A20,A21,A23,A24,A25,A3,A4,A7,A9,B1,B10,B100,B102,B103,B105,B109,B11,B110,B111,B113,B114,B119,B120,B121,B123,B125,B126,B127,B128,B130,B131,B132,B134,B136,B137,B139,B14,B140,B15,B16,B17,B18,B20,B22,B3,B30,B31,B34,B35,B36,B4,B42,B45,B49,B50,B51,B54,B57,B58,B6,B60,B62,B63,B67,B68,B69,B7,B70,B73,B75,B78,B79,B80,B81,B83,B86,B87,B89,B90,B91,B93,B94,B96,B97,B98,C1,C10,C11,C12,C13,C14,C15,C16,C18,C19,C20,C21,C22,C23,C25,C26,C27,C28,C30,C31,C32,C33,C34,C36,C37,C38,C39,C4,C40,C41,C42,C43,C45,C46,C48,C49,C5,C50,C52,C53,C54,C55,C56,C58,C59,C6,C60,C61,C63,C64,C65,C67,C69,C7,C70,C72,C73,C75,C76,C79,C8,C80,C82,C83,C84,C85,C86,C87,D1,D10,D11,D2,D3,D5,D7,D8,D9
lof_cds	Chr1	69926041	TAA	T	INDEL	2bp_deletion	frameshift_variant	LOC131005562	SmilChr01G005234	131005562	rna-XM_057932570.1,rna-XM_057932571.1,rna-XM_057932572.1	170	A1,A10,A11,A14,A18,A19,A2,A20,A21,A23,A24,A25,A3,A4,A7,A9,B1,B10,B100,B102,B103,B105,B109,B11,B110,B111,B113,B114,B119,B120,B121,B123,B125,B126,B127,B128,B130,B131,B132,B134,B136,B137,B139,B14,B140,B15,B16,B17,B18,B20,B22,B3,B30,B31,B34,B35,B36,B4,B41,B42,B45,B49,B50,B51,B54,B57,B58,B6,B60,B62,B63,B67,B68,B69,B7,B70,B73,B75,B78,B79,B80,B81,B83,B86,B87,B89,B90,B91,B93,B94,B96,B97,B98,C1,C10,C11,C12,C13,C14,C15,C16,C18,C19,C20,C21,C22,C23,C25,C26,C27,C28,C30,C31,C32,C33,C34,C36,C37,C38,C39,C4,C40,C41,C42,C43,C45,C46,C48,C49,C5,C50,C52,C53,C54,C55,C56,C58,C59,C6,C60,C61,C63,C64,C65,C67,C69,C7,C70,C72,C73,C75,C76,C79,C8,C80,C82,C83,C84,C85,C86,C87,D1,D10,D11,D2,D3,D5,D7,D8,D9
lof_cds	Chr1	69926045	C	CGG	INDEL	2bp_insertion	frameshift_variant	LOC131005562	SmilChr01G005234	131005562	rna-XM_057932570.1,rna-XM_057932571.1,rna-XM_057932572.1	169	A1,A10,A11,A14,A18,A19,A2,A20,A21,A23,A24,A25,A3,A4,A7,A9,B1,B10,B100,B102,B103,B105,B109,B11,B110,B111,B113,B114,B119,B120,B121,B123,B125,B126,B127,B128,B130,B131,B132,B134,B136,B137,B14,B140,B15,B16,B17,B18,B20,B22,B3,B30,B31,B34,B35,B36,B4,B41,B42,B45,B49,B50,B51,B54,B57,B58,B6,B60,B62,B63,B67,B68,B69,B7,B70,B73,B75,B78,B79,B80,B81,B83,B86,B87,B89,B90,B91,B93,B94,B96,B97,B98,C1,C10,C11,C12,C13,C14,C15,C16,C18,C19,C20,C21,C22,C23,C25,C26,C27,C28,C30,C31,C32,C33,C34,C36,C37,C38,C39,C4,C40,C41,C42,C43,C45,C46,C48,C49,C5,C50,C52,C53,C54,C55,C56,C58,C59,C6,C60,C61,C63,C64,C65,C67,C69,C7,C70,C72,C73,C75,C76,C79,C8,C80,C82,C83,C84,C85,C86,C87,D1,D10,D11,D2,D3,D5,D7,D8,D9
lof_cds	Chr1	69926080	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131005562	SmilChr01G005234	131005562	rna-XM_057932570.1,rna-XM_057932571.1,rna-XM_057932572.1	6	B104,B13,B24,B41,B82,C1
lof_cds	Chr1	69926084	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131005562	SmilChr01G005234	131005562	rna-XM_057932570.1,rna-XM_057932571.1,rna-XM_057932572.1	6	B104,B13,B24,B41,B82,C1
typical_cds_rare	Chr1	69926154	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005562	SmilChr01G005234	131005562	rna-XM_057932570.1,rna-XM_057932571.1,rna-XM_057932572.1	1	B104