source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	71970430	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	34	A1,A18,A19,A20,A7,B112,B113,B134,B136,B138,B140,B18,B37,B38,B39,B47,B55,B62,B68,B7,B74,B93,B99,C12,C15,C23,C34,C35,C39,C43,C54,C58,C6,D3
lof_cds	Chr1	71970492	G	GTA	INDEL	2bp_insertion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	1	A1
typical_cds_rare	Chr1	71970492	G	GTA	INDEL	2bp_insertion	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	1	A1
typical_cds_rare	Chr1	71970499	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	C15,C58
typical_cds_rare	Chr1	71970544	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	1	B99
typical_cds_rare	Chr1	71970587	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	5	A10,B120,B15,C21,C86
typical_cds_rare	Chr1	71970591	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	5	A10,B120,B15,C21,C86
typical_cds_rare	Chr1	71970595	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	B69,C65
lof_cds	Chr1	71970602	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	4	B135,B69,B78,C2
typical_cds_rare	Chr1	71970602	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	4	B135,B69,B78,C2
typical_cds_rare	Chr1	71970604	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	4	B26,B28,B8,C14
typical_cds_rare	Chr1	71970624	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	4	A16,B135,B69,C2
typical_cds_rare	Chr1	71970626	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	4	B26,B41,B8,C14
typical_cds_rare	Chr1	71970637	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	4	A10,B120,B15,C21
typical_cds_rare	Chr1	71970679	AAC	*	INDEL	2bp_deletion	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	3	A1,B74,C76
lof_cds	Chr1	71970727	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	42	A18,B106,B109,B112,B118,B123,B134,B137,B139,B14,B27,B29,B30,B34,B35,B38,B39,B42,B43,B48,B5,B51,B52,B59,B65,B84,B91,C13,C20,C22,C38,C41,C47,C49,C50,C52,C63,C70,C77,C87,D1,D3
typical_cds_rare	Chr1	71970803	TCC	*	INDEL	2bp_deletion	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	5	A1,B74,B80,C40,C45
typical_cds_rare	Chr1	71970829	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	1	A21
lof_cds	Chr1	71970843	A	AAC	INDEL	2bp_insertion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	A1,B118
typical_cds_rare	Chr1	71970843	A	AAC	INDEL	2bp_insertion	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	A1,B118
lof_cds	Chr1	71970856	A	ACG	INDEL	2bp_insertion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	23	A18,B106,B112,B123,B134,B139,B14,B30,B38,B42,B43,B48,B65,B91,C20,C38,C47,C49,C63,C77,C87,D1,D3
lof_cds	Chr1	71970859	G	GGA	INDEL	2bp_insertion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	23	A18,B106,B112,B123,B134,B139,B14,B30,B38,B42,B43,B48,B65,B91,C20,C38,C47,C49,C63,C77,C87,D1,D3
lof_cds	Chr1	71970863	A	AAC	INDEL	2bp_insertion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	23	B106,B112,B123,B134,B139,B14,B29,B30,B38,B42,B43,B48,B65,B91,C20,C38,C47,C49,C63,C77,C87,D1,D3
lof_cds	Chr1	71970864	GTT	G	INDEL	2bp_deletion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	26	A18,B106,B112,B123,B134,B139,B14,B29,B30,B38,B42,B43,B48,B65,B91,C20,C38,C47,C49,C51,C63,C64,C77,C87,D1,D3
lof_cds	Chr1	71970884	CTT	C	INDEL	2bp_deletion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	28	A18,B106,B112,B123,B134,B139,B14,B28,B29,B30,B33,B38,B42,B43,B48,B65,B84,B91,C20,C38,C47,C49,C51,C63,C77,C87,D1,D3
lof_cds	Chr1	71970898	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	B33,B84
typical_cds_rare	Chr1	71970898	ATT	A	INDEL	2bp_deletion	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	B33,B84
lof_cds	Chr1	71970901	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	1	B33
typical_cds_rare	Chr1	71970901	GT	G	INDEL	1bp_deletion	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	1	B33
lof_cds	Chr1	71970924	ACT	A	INDEL	2bp_deletion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	58	A1,A10,A18,B106,B109,B112,B123,B134,B137,B15,B21,B27,B28,B29,B30,B31,B34,B35,B36,B37,B39,B42,B43,B46,B48,B5,B51,B52,B59,B64,B65,B80,B84,B85,B91,C13,C20,C22,C28,C35,C38,C41,C47,C49,C50,C51,C63,C64,C66,C73,C76,C77,C79,C87,D1,D3,D5,D8
lof_cds	Chr1	71971088	T	TAA	INDEL	2bp_insertion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	9	B134,B21,B36,B42,B69,B72,C21,C47,C49
typical_cds_rare	Chr1	71971131	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	3	B117,B134,B85
typical_cds_rare	Chr1	71971134	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	B117,B85
lof_cds	Chr1	71971139	CTG	C	INDEL	2bp_deletion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	B117,B85
typical_cds_rare	Chr1	71971139	CTG	C	INDEL	2bp_deletion	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	B117,B85
lof_cds	Chr1	71971208	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	C15,C58
typical_cds_rare	Chr1	71971208	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	C15,C58
typical_cds_rare	Chr1	71971361	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	C80,D2
lof_cds	Chr1	71971373	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	8	A18,B33,B69,B72,B84,B98,C51,C65
typical_cds_rare	Chr1	71971381	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	5	B113,B53,B66,D2,D7
typical_cds_rare	Chr1	71971416	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	1	C75
lof_cds	Chr1	71971446	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	16	B1,B28,B31,B41,B48,B65,B74,B75,B80,C15,C35,C40,C48,C5,C60,D5
lof_cds	Chr1	71971448	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	17	A10,B1,B28,B31,B41,B48,B65,B74,B75,B80,C15,C35,C40,C48,C5,C60,D5
typical_cds_rare	Chr1	71971460	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	B23,C80
lof_cds	Chr1	71971474	TCG	T	INDEL	2bp_deletion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	B23,C80
typical_cds_rare	Chr1	71971474	TCG	T	INDEL	2bp_deletion	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	B23,C80
typical_cds_rare	Chr1	71971475	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	5	B112,B123,B137,B43,D3
lof_cds	Chr1	71971479	C	CGT	INDEL	2bp_insertion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	B23,C80
typical_cds_rare	Chr1	71971479	C	CGT	INDEL	2bp_insertion	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	B23,C80
typical_cds_rare	Chr1	71972183	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	3	B2,B23,D4
typical_cds_rare	Chr1	71972191	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	1	B94
typical_cds_rare	Chr1	71972204	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	B21,B94
lof_cds	Chr1	71972215	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	B21,B94
typical_cds_rare	Chr1	71972215	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	B21,B94
typical_cds_rare	Chr1	71972217	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	5	B113,B53,B66,D2,D7
lof_cds	Chr1	71972330	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	11	B1,B109,B28,B46,B7,B75,B80,B99,C39,C4,C47
lof_cds	Chr1	71972339	C	CTT	INDEL	2bp_insertion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	46	A15,A18,A21,B1,B112,B115,B117,B118,B125,B137,B26,B27,B34,B4,B42,B43,B50,B63,B69,B71,B8,B80,B81,B89,B95,B98,C13,C19,C22,C24,C38,C40,C44,C50,C51,C62,C65,C66,C7,C71,C73,C77,C78,C8,C81,D5
typical_cds_rare	Chr1	71972365	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	3	B111,C5,C76
lof_cds	Chr1	71972387	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	3	B69,B98,C65
typical_cds_rare	Chr1	71972387	A	ACC	INDEL	2bp_insertion	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	3	B69,B98,C65
lof_cds	Chr1	71972398	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	3	B69,B98,C65
typical_cds_rare	Chr1	71972398	GC	G	INDEL	1bp_deletion	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	3	B69,B98,C65
typical_cds_rare	Chr1	71972401	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	5	B1,B63,B71,C8,C86
typical_cds_rare	Chr1	71972901	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	5	B109,B30,B42,C60,C87
lof_cds	Chr1	71972986	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	8	B2,B54,B65,C1,C25,C26,C29,C56
lof_cds	Chr1	71972995	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	B67,C58
typical_cds_rare	Chr1	71972995	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131005851	SmilChr01G005514	131005851	rna-XM_057932953.1	2	B67,C58