source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	74645564	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	1	B73
typical_cds_rare	Chr1	74645564	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	1	B73
typical_cds_rare	Chr1	74645579	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	B131,C78
typical_cds_rare	Chr1	74645587	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	1	B131
typical_cds_rare	Chr1	74645682	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	B102,B86
typical_cds_rare	Chr1	74645691	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	1	B79
typical_cds_rare	Chr1	74645695	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	1	A24
lof_cds	Chr1	74645697	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	6	A11,B30,B55,C38,C46,D1
lof_cds	Chr1	74645704	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	9	B102,B42,B46,B72,B86,B93,C21,C40,C58
typical_cds_rare	Chr1	74645709	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	5	C15,C2,C42,C47,C71
typical_cds_rare	Chr1	74645714	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	B136,B99,C21,D10
typical_cds_rare	Chr1	74645723	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	C15,C42,C71,D10
typical_cds_rare	Chr1	74645731	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	A1,B78,C59,D8
typical_cds_rare	Chr1	74645743	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	1	B4
typical_cds_rare	Chr1	74646423	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	B103,B114,B38,C14
lof_cds	Chr1	74646431	AGC	A	INDEL	2bp_deletion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	3	B27,B84,C24
typical_cds_rare	Chr1	74646431	AGC	A	INDEL	2bp_deletion	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	3	B27,B84,C24
lof_cds	Chr1	74646432	GCC	G	INDEL	2bp_deletion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	22	A1,A10,A5,B120,B121,B123,B131,B34,B5,B60,B64,B67,B82,B85,B92,C14,C6,C82,C86,D10,D3,D4
lof_cds	Chr1	74646435	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	29	A1,A10,A5,B102,B120,B121,B123,B131,B27,B30,B34,B37,B54,B60,B64,B67,B82,B84,B85,B92,C14,C24,C6,C8,C82,C86,D10,D3,D4
lof_cds	Chr1	74646440	G	GAA	INDEL	2bp_insertion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	3	A5,D3,D4
typical_cds_rare	Chr1	74646440	G	GAA	INDEL	2bp_insertion	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	3	A5,D3,D4
typical_cds_rare	Chr1	74646450	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	C42,C70
typical_cds_rare	Chr1	74646468	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	B114,B132,B8,B80
typical_cds_rare	Chr1	74646507	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	B90,C70
typical_cds_rare	Chr1	74646531	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	B137,B78,C86,D4
typical_cds_rare	Chr1	74646537	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	B5,B8,B83,B90
typical_cds_rare	Chr1	74646877	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	B113,B44,B77,C1
typical_cds_rare	Chr1	74646879	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	B23,C24
typical_cds_rare	Chr1	74646885	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	B74,B79
typical_cds_rare	Chr1	74646890	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	5	B101,B104,B53,C19,D3
typical_cds_rare	Chr1	74646919	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	A9,B103,B108,B57
typical_cds_rare	Chr1	74646930	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	1	D10
typical_cds_rare	Chr1	74646954	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	5	B105,C19,C20,C32,C45
typical_cds_rare	Chr1	74646958	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	B129,C31
typical_cds_rare	Chr1	74646962	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	B53,C19,D10,D3
typical_cds_rare	Chr1	74646985	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	A9,B105
typical_cds_rare	Chr1	74647049	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	3	B140,C4,C60
typical_cds_rare	Chr1	74647071	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	B63,C66
typical_cds_rare	Chr1	74647490	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	B108,B122,B6,B60
typical_cds_rare	Chr1	74647507	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	A21,B22,C66,C79
typical_cds_rare	Chr1	74647522	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	1	B82
lof_cds	Chr1	74647542	CCA	C	INDEL	2bp_deletion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	8	B1,C14,C31,C45,C55,C74,C9,D4
lof_cds	Chr1	74647546	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	8	B1,C14,C31,C45,C55,C74,C9,D4
lof_cds	Chr1	74647564	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	15	B111,B122,B15,B29,B6,B60,B78,C12,C18,C21,C25,C36,C39,C47,C77
lof_cds	Chr1	74647571	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	13	B101,B109,B114,B18,B24,B46,B73,B84,C13,C20,C25,C32,C48
lof_cds	Chr1	74647576	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	27	A1,A16,B105,B111,B15,B29,B35,B48,B49,B59,B6,B61,B67,B75,B78,B91,C17,C21,C25,C41,C44,C47,C57,C72,C8,C82,D6
typical_cds_rare	Chr1	74647606	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	5	A10,B24,B46,B9,C18
lof_cds	Chr1	74647802	A	AAT	INDEL	2bp_insertion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	24	A19,B104,B111,B125,B129,B136,B140,B16,B3,B44,B46,B5,B53,B65,B70,B83,C13,C14,C15,C2,C54,C62,C77,D9
lof_cds	Chr1	74647804	TGC	T	INDEL	2bp_deletion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	28	A19,A5,B104,B111,B125,B129,B136,B140,B16,B3,B31,B44,B46,B5,B53,B65,B70,B72,C13,C14,C15,C2,C54,C62,C7,C74,C77,D9
lof_cds	Chr1	74647809	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	10	A5,B44,B66,B83,C14,C2,C33,C51,C8,D9
lof_cds	Chr1	74647810	GCT	G	INDEL	2bp_deletion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	A5,B111,B43,C35
typical_cds_rare	Chr1	74647810	GCT	G	INDEL	2bp_deletion	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	A5,B111,B43,C35
lof_cds	Chr1	74647877	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	3	B131,B16,B37
typical_cds_rare	Chr1	74647877	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	3	B131,B16,B37
typical_cds_rare	Chr1	74647882	ACC	*	INDEL	2bp_deletion	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	1	A23
typical_cds_rare	Chr1	74647906	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	3	B118,B94,C45
typical_cds_rare	Chr1	74647918	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	3	B18,B93,C64
typical_cds_rare	Chr1	74648263	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	3	B126,C26,C4
typical_cds_rare	Chr1	74648270	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	1	B3
typical_cds_rare	Chr1	74648293	CT	*	INDEL	1bp_deletion	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	B105,C20
typical_cds_rare	Chr1	74648295	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	5	A11,B102,B47,B75,B78
typical_cds_rare	Chr1	74648304	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	5	B32,B73,B78,B8,B82
typical_cds_rare	Chr1	74648339	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	C40,D1
lof_cds	Chr1	74648358	AGT	A	INDEL	2bp_deletion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	B98,C50
typical_cds_rare	Chr1	74648358	AGT	A	INDEL	2bp_deletion	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	B98,C50
lof_cds	Chr1	74648361	C	CGA	INDEL	2bp_insertion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	B98,C50
typical_cds_rare	Chr1	74648361	C	CGA	INDEL	2bp_insertion	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	B98,C50
typical_cds_rare	Chr1	74648374	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	5	B105,B12,C26,C40,D1
lof_cds	Chr1	74648397	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	5	A4,B23,C24,C61,C71
typical_cds_rare	Chr1	74648397	GT	G	INDEL	1bp_deletion	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	5	A4,B23,C24,C61,C71
typical_cds_rare	Chr1	74648399	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	B12,C26,C40,D1
typical_cds_rare	Chr1	74648419	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	A18,B85
lof_cds	Chr1	74648422	C	CGA	INDEL	2bp_insertion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	8	B1,B114,B118,B69,B71,C30,C86,D2
typical_cds_rare	Chr1	74648428	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	C26,C50
lof_cds	Chr1	74649045	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	18	A13,A6,B112,B114,B118,B126,B33,B34,B57,B64,B74,B8,B96,C36,C39,C56,C66,C86
lof_cds	Chr1	74649048	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	18	A13,A6,B112,B114,B118,B126,B33,B34,B57,B64,B74,B8,B96,C36,C39,C56,C66,C86
typical_cds_rare	Chr1	74649076	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	3	C11,C60,C69
typical_cds_rare	Chr1	74649080	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	1	D4
lof_cds	Chr1	74649130	CCT	C	INDEL	2bp_deletion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	1	D10
typical_cds_rare	Chr1	74649130	CCT	C	INDEL	2bp_deletion	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	1	D10
typical_cds_rare	Chr1	74649152	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	C1,C84
typical_cds_rare	Chr1	74649157	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	B140,C60
typical_cds_rare	Chr1	74649229	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	B35,D10
typical_cds_rare	Chr1	74649249	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	3	B112,B39,B40
typical_cds_rare	Chr1	74649286	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	A7,B35,B52,B66
typical_cds_rare	Chr1	74649367	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	B89,C2,C25,C52
typical_cds_rare	Chr1	74649371	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	3	B104,B122,C62
typical_cds_rare	Chr1	74649372	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	1	B23
typical_cds_rare	Chr1	74649390	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	1	B43
typical_cds_rare	Chr1	74649391	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	4	B25,B54,C21,C53
typical_cds_rare	Chr1	74649407	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	B33,C19
lof_cds	Chr1	74649430	G	GAA	INDEL	2bp_insertion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	21	A22,A9,B100,B126,B139,B32,B57,B62,B73,B78,B8,B83,B85,C12,C16,C29,C35,C4,C50,C80,C9
typical_cds_rare	Chr1	74649463	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	5	A23,B54,B94,C26,C35
lof_cds	Chr1	74649472	GGC	G	INDEL	2bp_deletion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	3	A11,B90,B92
typical_cds_rare	Chr1	74649472	GGC	G	INDEL	2bp_deletion	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	3	A11,B90,B92
typical_cds_rare	Chr1	74649475	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	5	B23,B43,B99,C35,C71
typical_cds_rare	Chr1	74649494	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	1	A15
typical_cds_rare	Chr1	74649558	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	B23,B99
typical_cds_rare	Chr1	74649564	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	2	B118,B36
typical_cds_rare	Chr1	74649570	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	1	B128
lof_cds	Chr1	74649584	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131006165	SmilChr01G005871	131006165	rna-XM_057933341.1	7	B140,B80,B83,B9,C15,C18,C31