source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr1	74682489	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	B100
typical_cds_rare	Chr1	74682489	CT	C	INDEL	1bp_deletion	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	B100
typical_cds_rare	Chr1	74682499	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	A25
lof_cds	Chr1	74682503	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	2	A25,B140
typical_cds_rare	Chr1	74682503	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	2	A25,B140
lof_cds	Chr1	74682509	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	33	A13,A14,A7,B102,B118,B12,B122,B129,B13,B135,B136,B138,B16,B20,B26,B29,B53,B61,B73,B93,B97,C18,C24,C38,C43,C5,C54,C61,C70,C74,C9,D10,D2
typical_cds_rare	Chr1	74682537	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	A25
lof_cds	Chr1	74682587	T	TGG	INDEL	2bp_insertion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	24	A13,A14,A7,B12,B122,B129,B13,B135,B136,B138,B16,B20,B53,B73,B93,B97,C18,C24,C5,C54,C70,C74,D10,D2
typical_cds_rare	Chr1	74682618	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	5	B125,B29,B79,B90,B92
typical_cds_rare	Chr1	74682620	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	B126
lof_cds	Chr1	74682635	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	25	A14,A7,B12,B125,B129,B13,B135,B136,B138,B20,B29,B53,B73,B79,B90,B92,B93,B97,C18,C24,C5,C54,C70,C74,D10
lof_cds	Chr1	74682677	AAG	A	INDEL	2bp_deletion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	C9
typical_cds_rare	Chr1	74682677	AAG	A	INDEL	2bp_deletion	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	C9
lof_cds	Chr1	74682718	TAA	T	INDEL	2bp_deletion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	16	A13,A14,B129,B13,B135,B138,B26,B73,B93,B97,C18,C24,C5,C54,C70,D2
lof_cds	Chr1	74682725	A	AGT	INDEL	2bp_insertion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	20	A9,B100,B107,B126,B127,B139,B32,B57,B73,B78,B8,B88,C12,C16,C19,C29,C35,C4,C70,C9
lof_cds	Chr1	74682727	GGA	G	INDEL	2bp_deletion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	20	A9,B100,B107,B126,B127,B139,B32,B57,B73,B78,B8,B88,C12,C16,C19,C29,C35,C4,C70,C9
lof_cds	Chr1	74682763	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	2	A10,B11
typical_cds_rare	Chr1	74682763	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	2	A10,B11
typical_cds_rare	Chr1	74682775	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	4	B21,B58,B6,B66
typical_cds_rare	Chr1	74682779	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	5	B125,B29,B90,B92,C77
lof_cds	Chr1	74682802	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	8	A14,B129,B138,B26,B73,B97,C70,D2
lof_cds	Chr1	74682806	T	TAC	INDEL	2bp_insertion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	7	A14,B129,B138,B26,B73,B97,D2
lof_cds	Chr1	74682814	C	CTT	INDEL	2bp_insertion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	7	A14,B129,B138,B26,B73,B97,D2
lof_cds	Chr1	74682816	ACC	A	INDEL	2bp_deletion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	7	A14,B129,B138,B26,B73,B97,D2
lof_cds	Chr1	74682835	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	B20
typical_cds_rare	Chr1	74682835	G	GA	INDEL	1bp_insertion	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	B20
lof_cds	Chr1	74682836	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	B20
typical_cds_rare	Chr1	74682836	T	TA	INDEL	1bp_insertion	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	B20
lof_cds	Chr1	74682850	T	TCA	INDEL	2bp_insertion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	3	B15,B5,C31
typical_cds_rare	Chr1	74682850	T	TCA	INDEL	2bp_insertion	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	3	B15,B5,C31
lof_cds	Chr1	74682883	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	30	A20,A8,B10,B115,B131,B139,B14,B20,B33,B34,B54,B57,B61,B67,B82,B94,C10,C19,C34,C40,C50,C56,C6,C65,C75,C81,C82,C83,C84,D6
lof_cds	Chr1	74682913	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	75	A10,A11,A13,A16,A9,B102,B103,B108,B11,B112,B113,B114,B118,B12,B120,B125,B131,B21,B22,B26,B27,B30,B33,B34,B36,B37,B38,B39,B45,B47,B51,B52,B53,B54,B58,B6,B64,B66,B68,B69,B71,B75,B76,B77,B86,B89,B90,B92,C1,C17,C23,C27,C36,C37,C39,C40,C48,C51,C55,C56,C61,C64,C66,C7,C73,C78,C79,C8,C85,C86,D1,D10,D11,D2,D3
typical_cds_rare	Chr1	74682952	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	4	B137,B50,C19,C46
lof_cds	Chr1	74682963	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	B79
typical_cds_rare	Chr1	74682963	C	CG	INDEL	1bp_insertion	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	B79
typical_cds_rare	Chr1	74682980	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	C19
lof_cds	Chr1	74683018	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	7	B125,B29,B79,B92,C38,C49,C77
lof_cds	Chr1	74683023	GCC	G	INDEL	2bp_deletion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	7	B125,B29,B79,B92,C38,C49,C77
lof_cds	Chr1	74683031	A	AAC	INDEL	2bp_insertion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	17	A18,A5,B108,B138,B36,B58,B59,B65,B74,B91,B98,C20,C24,C3,C55,C6,C84
typical_cds_rare	Chr1	74683072	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	4	B15,B5,C19,C31
typical_cds_rare	Chr1	74683104	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	2	B136,C15
typical_cds_rare	Chr1	74683133	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	2	B136,C15
lof_cds	Chr1	74683151	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	35	A10,A8,B10,B101,B11,B129,B139,B14,B140,B16,B25,B29,B54,B6,B60,B68,B9,B94,C10,C18,C22,C28,C38,C40,C48,C49,C50,C57,C63,C67,C71,C77,C84,D5,D6
lof_cds	Chr1	74683163	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	13	A8,B10,B139,B14,B54,B68,B94,C10,C40,C48,C50,C84,D6
typical_cds_rare	Chr1	74683171	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	C31
typical_cds_rare	Chr1	74683178	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	3	B136,C15,C83
typical_cds_rare	Chr1	74683179	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	3	B136,C15,C83
typical_cds_rare	Chr1	74683181	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	C31
typical_cds_rare	Chr1	74683207	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	C63
typical_cds_rare	Chr1	74683213	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	B101
lof_cds	Chr1	74683231	AGT	A	INDEL	2bp_deletion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	B108
typical_cds_rare	Chr1	74683231	AGT	A	INDEL	2bp_deletion	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	B108
typical_cds_rare	Chr1	74683249	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	4	B136,B82,C15,C83
typical_cds_rare	Chr1	74683252	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	4	B15,B82,C31,C83
typical_cds_rare	Chr1	74683269	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	4	B136,B82,C15,C83
typical_cds_rare	Chr1	74683289	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	2	B15,C31
lof_cds	Chr1	74683292	ACG	A	INDEL	2bp_deletion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	2	B15,C31
typical_cds_rare	Chr1	74683292	ACG	A	INDEL	2bp_deletion	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	2	B15,C31
typical_cds_rare	Chr1	74683293	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	2	B136,C15
typical_cds_rare	Chr1	74683344	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	1	A16
typical_cds_rare	Chr1	74683909	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1	1	B114
lof_cds	Chr1	74684063	GCC	G	INDEL	2bp_deletion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1	4	B122,B84,C3,C87
typical_cds_rare	Chr1	74684063	GCC	G	INDEL	2bp_deletion	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1	4	B122,B84,C3,C87
typical_cds_rare	Chr1	74684066	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1	4	B122,B84,C3,C87
lof_cds	Chr1	74684068	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1	4	B122,B84,C3,C87
typical_cds_rare	Chr1	74684068	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1	4	B122,B84,C3,C87
lof_cds	Chr1	74684103	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1	4	B122,B84,C3,C87
typical_cds_rare	Chr1	74684103	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1	4	B122,B84,C3,C87
typical_cds_rare	Chr1	74684107	TC	*	INDEL	1bp_deletion	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1	2	B125,B90
typical_cds_rare	Chr1	74684114	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	4	B122,B84,C3,C87
typical_cds_rare	Chr1	74684161	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	4	B122,B84,C3,C87
typical_cds_rare	Chr1	74684174	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006167	SmilChr01G005873	131006167	rna-XM_057933343.1,rna-XM_057933344.1,rna-XM_057933345.1	4	B104,B113,B83,C4