source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr1	75507049	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	3	B76,B81,C82
typical_cds_rare	Chr1	75507107	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	B46,D2
lof_cds	Chr1	75507246	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	68	A14,A19,A2,A24,A9,B1,B104,B106,B114,B118,B12,B121,B122,B125,B129,B131,B132,B133,B136,B17,B19,B21,B22,B26,B31,B32,B33,B38,B39,B42,B43,B44,B53,B58,B6,B60,B66,B68,B75,B77,B79,B87,B90,B91,B94,C15,C20,C22,C24,C30,C31,C32,C37,C43,C45,C47,C5,C59,C61,C63,C67,C68,C81,C86,D2,D3,D5,D7
lof_cds	Chr1	75507341	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	25	A13,A18,A2,B11,B122,B128,B28,B45,B47,B55,B62,B72,C11,C15,C30,C4,C56,C57,C71,C72,C76,C77,C82,C84,D8
typical_cds_rare	Chr1	75507407	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	B21,B85
typical_cds_rare	Chr1	75507415	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	B104
typical_cds_rare	Chr1	75507503	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	B61,C55
typical_cds_rare	Chr1	75507535	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	C59,D10
typical_cds_rare	Chr1	75507541	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	B106,B21
typical_cds_rare	Chr1	75507564	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	5	B62,C41,C56,C71,C72
typical_cds_rare	Chr1	75507615	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	B47
typical_cds_rare	Chr1	75507659	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	C25
typical_cds_rare	Chr1	75507761	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	B23,B30
typical_cds_rare	Chr1	75507849	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	3	C27,C42,C50
lof_cds	Chr1	75507861	A	AAG	INDEL	2bp_insertion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	44	A11,A24,A3,A9,B1,B107,B114,B118,B12,B121,B122,B128,B133,B137,B19,B26,B33,B34,B38,B39,B53,B55,B58,B6,B60,B66,B87,B90,B92,B94,C15,C22,C25,C30,C31,C33,C45,C60,C61,C67,C81,D3,D4,D5
lof_cds	Chr1	75507865	G	GTT	INDEL	2bp_insertion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	21	A25,B103,B105,B112,B42,B43,B48,B59,B76,B88,B9,B97,B99,C28,C47,C53,C55,C56,C61,C7,D8
lof_cds	Chr1	75507878	T	TTC	INDEL	2bp_insertion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	44	A11,A24,A3,A9,B1,B107,B114,B118,B12,B121,B122,B128,B133,B137,B26,B33,B34,B38,B39,B53,B55,B58,B6,B60,B66,B87,B90,B92,B94,C15,C22,C25,C30,C31,C33,C45,C59,C60,C61,C67,C81,D3,D4,D5
typical_cds_rare	Chr1	75507917	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	C79
lof_cds	Chr1	75507941	CTG	C	INDEL	2bp_deletion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	B117
typical_cds_rare	Chr1	75507941	CTG	C	INDEL	2bp_deletion	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	B117
lof_cds	Chr1	75507945	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	9	A22,B102,B22,B27,B30,B89,C38,C44,D1
typical_cds_rare	Chr1	75507975	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	B81
lof_cds	Chr1	75507994	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	C13
typical_cds_rare	Chr1	75507994	TGA	T	INDEL	2bp_deletion	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	C13
typical_cds_rare	Chr1	75508000	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	3	B115,B46,C52
lof_cds	Chr1	75508007	TCG	T	INDEL	2bp_deletion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	B23,C46
typical_cds_rare	Chr1	75508007	TCG	T	INDEL	2bp_deletion	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	B23,C46
lof_cds	Chr1	75508079	T	TTG	INDEL	2bp_insertion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	B115,C52
typical_cds_rare	Chr1	75508079	T	TTG	INDEL	2bp_insertion	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	B115,C52
lof_cds	Chr1	75508100	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	21	A18,A19,A4,B100,B109,B113,B120,B125,B133,B137,B35,B55,B78,C14,C16,C23,C32,C43,C54,C77,D2
typical_cds_rare	Chr1	75508131	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	C59,D11
typical_cds_rare	Chr1	75508147	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	3	A6,B130,C82
lof_cds	Chr1	75508218	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	5	B114,B84,C34,C51,D6
typical_cds_rare	Chr1	75508218	ATT	A	INDEL	2bp_deletion	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	5	B114,B84,C34,C51,D6
typical_cds_rare	Chr1	75508231	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	B107,B128
typical_cds_rare	Chr1	75508256	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	B67,B81
lof_cds	Chr1	75508282	G	GGT	INDEL	2bp_insertion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	5	A6,B119,B127,B62,C79
typical_cds_rare	Chr1	75508282	G	GGT	INDEL	2bp_insertion	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	5	A6,B119,B127,B62,C79
lof_cds	Chr1	75508352	AAT	A	INDEL	2bp_deletion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	4	B110,B47,C59,D4
typical_cds_rare	Chr1	75508352	AAT	A	INDEL	2bp_deletion	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	4	B110,B47,C59,D4
lof_cds	Chr1	75508378	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	B104
typical_cds_rare	Chr1	75508378	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	B104
typical_cds_rare	Chr1	75508400	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	B110,B47
lof_cds	Chr1	75508433	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	12	B107,B109,B113,B39,B56,B69,B96,C24,C33,C41,C53,C76
typical_cds_rare	Chr1	75508466	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	B1,B52
lof_cds	Chr1	75508480	GTC	G	INDEL	2bp_deletion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	A11
typical_cds_rare	Chr1	75508480	GTC	G	INDEL	2bp_deletion	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	A11
typical_cds_rare	Chr1	75508515	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	A6
typical_cds_rare	Chr1	75508541	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	B110,D4
typical_cds_rare	Chr1	75508711	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	4	B42,B43,C59,C61
typical_cds_rare	Chr1	75508746	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	3	B100,B60,C24
lof_cds	Chr1	75508774	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	6	B107,B128,B91,C14,C36,D2
lof_cds	Chr1	75508790	ACG	A	INDEL	2bp_deletion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	42	A10,A16,A22,B102,B107,B12,B121,B123,B126,B128,B136,B137,B140,B18,B2,B22,B27,B30,B33,B36,B52,B56,B62,B74,B89,B93,B95,B96,C38,C4,C43,C44,C54,C57,C65,C69,C71,C74,C84,C9,D1,D9
typical_cds_rare	Chr1	75509018	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	C59,C61
lof_cds	Chr1	75509228	TGG	T	INDEL	2bp_deletion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	53	A11,A16,A22,A25,B102,B12,B120,B126,B127,B14,B140,B17,B18,B2,B22,B27,B29,B30,B33,B34,B36,B40,B43,B51,B52,B56,B66,B71,B74,B89,B9,B96,C20,C21,C32,C37,C38,C4,C43,C44,C51,C54,C57,C59,C6,C68,C71,C77,C78,C8,C87,C9,D1
lof_cds	Chr1	75509239	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	55	A11,A16,A22,A25,B102,B12,B120,B126,B127,B14,B140,B17,B18,B2,B22,B27,B29,B30,B33,B34,B36,B40,B43,B51,B52,B56,B66,B71,B74,B89,B9,B96,C16,C20,C21,C32,C37,C38,C4,C43,C44,C51,C54,C57,C59,C6,C68,C71,C77,C78,C8,C87,C9,D1,D7
lof_cds	Chr1	75509243	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	55	A11,A16,A22,A25,B102,B12,B120,B126,B127,B128,B14,B140,B17,B18,B2,B22,B27,B29,B30,B33,B34,B36,B40,B43,B51,B52,B56,B66,B71,B89,B9,B96,C16,C20,C21,C32,C37,C38,C4,C43,C44,C51,C54,C57,C59,C6,C68,C71,C77,C78,C8,C87,C9,D1,D7
lof_cds	Chr1	75509246	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	21	B1,B117,B130,B35,B46,B60,B61,B74,B81,B99,C17,C19,C22,C30,C35,C5,C60,C74,C81,D3,D5
lof_cds	Chr1	75509313	T	TC	INDEL	1bp_insertion	stop_gained,frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	B46
typical_cds_rare	Chr1	75509313	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	B46
lof_cds	Chr1	75509317	CAT	C	INDEL	2bp_deletion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	C60
typical_cds_rare	Chr1	75509317	CAT	C	INDEL	2bp_deletion	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	C60
lof_cds	Chr1	75509321	G	GTT	INDEL	2bp_insertion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	C60
typical_cds_rare	Chr1	75509321	G	GTT	INDEL	2bp_insertion	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	C60
typical_cds_rare	Chr1	75509366	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	3	B129,C22,C49
typical_cds_rare	Chr1	75509411	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	B111
typical_cds_rare	Chr1	75509439	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	A13
typical_cds_rare	Chr1	75509466	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	4	B9,C27,C55,C62
typical_cds_rare	Chr1	75509477	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	4	B110,B47,C59,D4
typical_cds_rare	Chr1	75509505	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	3	B53,B70,D11
lof_cds	Chr1	75509532	CAG	C	INDEL	2bp_deletion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	5	B53,B72,B81,C28,C53
typical_cds_rare	Chr1	75509532	CAG	C	INDEL	2bp_deletion	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	5	B53,B72,B81,C28,C53
typical_cds_rare	Chr1	75509556	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	A3
typical_cds_rare	Chr1	75509579	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	A3
typical_cds_rare	Chr1	75509585	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	2	C54,C80
lof_cds	Chr1	75509597	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	12	A24,A7,B108,B37,B53,B65,B72,B81,C28,C56,C62,C85
typical_cds_rare	Chr1	75509654	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	1	B53
lof_cds	Chr1	75509659	AGG	A	INDEL	2bp_deletion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	7	A24,A7,B37,B65,C28,C63,C77
lof_cds	Chr1	75509675	TAG	T	INDEL	2bp_deletion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	7	A24,A7,B37,B65,C28,C63,C77
typical_cds_rare	Chr1	75509679	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	3	C14,C2,D11
lof_cds	Chr1	75509681	A	ATG	INDEL	2bp_insertion	frameshift_variant	LOC131006251	SmilChr01G005990	131006251	rna-XM_057933433.1	7	A24,A7,B37,B65,C28,C63,C77