source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr2	635035	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	1	C36
typical_cds_rare	Chr2	635035	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	1	C36
typical_cds_rare	Chr2	635061	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	5	B110,B126,B132,B67,C1
typical_cds_rare	Chr2	635146	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	3	A18,B104,C15
lof_cds	Chr2	635147	A	ATG	INDEL	2bp_insertion	frameshift_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	5	A8,B122,B78,C9,D6
typical_cds_rare	Chr2	635147	A	ATG	INDEL	2bp_insertion	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	5	A8,B122,B78,C9,D6
typical_cds_rare	Chr2	635161	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	2	B104,C15
lof_cds	Chr2	635197	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	2	B36,C3
typical_cds_rare	Chr2	635197	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	2	B36,C3
typical_cds_rare	Chr2	635215	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	5	B115,B15,B79,C20,C34
typical_cds_rare	Chr2	635364	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	3	B23,C24,C27
typical_cds_rare	Chr2	635536	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	4	A23,B114,B13,B86
typical_cds_rare	Chr2	635556	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	3	B114,B46,B86
lof_cds	Chr2	635620	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	25	A3,B2,B20,B21,B36,B45,B46,B49,B52,B54,B61,B8,B80,C27,C28,C32,C47,C55,C58,C68,C70,C82,D3,D5,D8
typical_cds_rare	Chr2	635623	GCA	*	INDEL	2bp_deletion	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	5	B106,B109,B15,B16,B34
typical_cds_rare	Chr2	635768	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	1	D10
lof_cds	Chr2	635807	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	36	A2,B102,B113,B118,B119,B12,B123,B136,B137,B14,B140,B29,B31,B35,B41,B48,B59,B89,B95,C10,C13,C2,C25,C30,C33,C37,C38,C39,C4,C53,C73,C74,C76,C8,C80,D10
typical_cds_rare	Chr2	635862	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	3	B103,B58,B89
lof_cds	Chr2	635870	ATC	A	INDEL	2bp_deletion	frameshift_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	20	A13,A2,A5,B1,B115,B12,B28,B33,B55,B6,B94,B96,B98,C10,C17,C25,C27,C35,C73,C83
lof_cds	Chr2	635876	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	2	C58,C9
typical_cds_rare	Chr2	635876	T	TG	INDEL	1bp_insertion	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	2	C58,C9
lof_cds	Chr2	635959	GCA	G	INDEL	2bp_deletion	frameshift_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	9	B111,B124,B18,B32,C12,C16,C62,C78,C81
lof_cds	Chr2	635962	T	TTA	INDEL	2bp_insertion	frameshift_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	7	B124,B18,B32,C12,C16,C62,C78
lof_cds	Chr2	635993	TTA	T	INDEL	2bp_deletion	frameshift_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	6	B10,B29,B67,B75,B95,C77
lof_cds	Chr2	636000	A	ATT	INDEL	2bp_insertion	frameshift_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	6	B10,B29,B67,B75,B95,C77
lof_cds	Chr2	636003	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	7	B132,B22,B78,C1,C19,C47,D10
typical_cds_rare	Chr2	636030	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	1	C18
lof_cds	Chr2	636049	GCC	G	INDEL	2bp_deletion	frameshift_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	2	C1,D2
typical_cds_rare	Chr2	636049	GCC	G	INDEL	2bp_deletion	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	2	C1,D2
lof_cds	Chr2	636053	AAC	A	INDEL	2bp_deletion	frameshift_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	6	A4,B137,B29,B69,C18,C73
typical_cds_rare	Chr2	636093	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	2	B45,B94
typical_cds_rare	Chr2	636292	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	3	A7,B122,B135
typical_cds_rare	Chr2	636304	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	4	B123,B21,B82,C23
typical_cds_rare	Chr2	636350	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	1	D3
typical_cds_rare	Chr2	636358	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	3	B123,B42,C67
lof_cds	Chr2	636423	TGG	T	INDEL	2bp_deletion	frameshift_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	62	A13,A16,A18,A23,A25,A7,B10,B105,B106,B109,B115,B118,B121,B122,B123,B124,B138,B139,B2,B20,B22,B24,B25,B29,B30,B31,B34,B4,B42,B55,B63,B64,B70,B76,B77,B78,B84,B87,B9,B94,B98,C23,C24,C25,C33,C35,C36,C42,C55,C56,C59,C62,C7,C73,C81,C82,C83,C87,D10,D3,D4,D6
lof_cds	Chr2	636426	A	AAC	INDEL	2bp_insertion	frameshift_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	62	A13,A16,A18,A23,A25,A7,B10,B105,B106,B109,B115,B118,B121,B122,B123,B124,B138,B139,B2,B20,B22,B24,B25,B29,B30,B31,B34,B4,B42,B55,B63,B64,B70,B76,B77,B78,B84,B87,B9,B94,B98,C23,C24,C25,C33,C35,C36,C42,C55,C56,C59,C62,C7,C73,C81,C82,C83,C87,D10,D3,D4,D6
typical_cds_rare	Chr2	636463	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	1	A24
typical_cds_rare	Chr2	636468	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	2	B55,C7
typical_cds_rare	Chr2	636469	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	1	B140
typical_cds_rare	Chr2	636474	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	1	D11
typical_cds_rare	Chr2	636489	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	2	B115,C24
typical_cds_rare	Chr2	636503	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	2	B115,C24
typical_cds_rare	Chr2	636519	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	1	D6
typical_cds_rare	Chr2	636575	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	3	B78,C60,D9
typical_cds_rare	Chr2	636729	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	1	B19
typical_cds_rare	Chr2	636829	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	3	B21,C19,C71
typical_cds_rare	Chr2	636843	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	1	B21
typical_cds_rare	Chr2	636943	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	5	B100,B26,B45,C50,C55
lof_cds	Chr2	637469	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131012466	SmilChr02G000046	131012466	rna-XM_057940422.1	127	A1,A13,A14,A15,A18,A22,A24,A25,A4,A5,A6,A7,B1,B10,B100,B102,B105,B108,B11,B110,B112,B115,B117,B121,B122,B123,B125,B126,B128,B129,B13,B131,B132,B134,B135,B136,B138,B14,B15,B2,B21,B22,B24,B25,B26,B36,B38,B39,B4,B40,B44,B45,B48,B50,B60,B61,B62,B63,B65,B67,B68,B69,B7,B70,B72,B73,B79,B82,B87,B91,B92,B93,B96,B99,C11,C14,C16,C19,C20,C21,C22,C26,C29,C3,C31,C33,C34,C37,C40,C42,C44,C46,C47,C49,C5,C52,C53,C54,C55,C58,C60,C63,C64,C66,C67,C69,C70,C71,C72,C73,C74,C77,C78,C79,C8,C80,C81,C82,C84,C87,C9,D1,D10,D2,D5,D8,D9