source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr2	1080949	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	18	A10,B110,B124,B17,B27,B40,B46,B54,B67,B9,B94,C33,C34,C56,C80,C84,C85,D6
typical_cds_rare	Chr2	1080960	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	4	A8,C82,D11,D3
lof_cds	Chr2	1080970	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	38	A23,A25,B100,B102,B103,B11,B114,B122,B128,B129,B133,B134,B14,B34,B38,B39,B41,B47,B48,B57,B61,B70,B75,B81,C18,C31,C32,C35,C4,C51,C53,C60,C67,C68,C76,C77,C8,C84
lof_cds	Chr2	1080971	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	4	A4,A7,B135,B86
typical_cds_rare	Chr2	1080971	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	4	A4,A7,B135,B86
typical_cds_rare	Chr2	1080982	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	3	C60,C69,C71
typical_cds_rare	Chr2	1081004	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C74
typical_cds_rare	Chr2	1081011	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C74
typical_cds_rare	Chr2	1081054	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C55
typical_cds_rare	Chr2	1081085	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	3	B27,C52,D11
typical_cds_rare	Chr2	1081089	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C55
typical_cds_rare	Chr2	1081092	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C71
lof_cds	Chr2	1081122	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	10	B138,B27,B44,B62,B9,B92,C18,C45,C73,C78
lof_cds	Chr2	1081137	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	25	A1,B1,B101,B113,B21,B48,B52,B55,B56,B63,B64,B83,B85,B87,B93,C17,C22,C49,C55,C7,C74,C81,C87,D4,D9
typical_cds_rare	Chr2	1081140	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	B81,C58
typical_cds_rare	Chr2	1081143	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	B43,B50
typical_cds_rare	Chr2	1081145	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	4	A16,B121,B129,B136
typical_cds_rare	Chr2	1081154	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	B27
lof_cds	Chr2	1081194	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	3	B140,B68,C40
typical_cds_rare	Chr2	1081194	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	3	B140,B68,C40
typical_cds_rare	Chr2	1081218	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	4	B127,B22,B43,B50
lof_cds	Chr2	1081225	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	12	B2,B30,B32,B51,B54,B9,B95,C13,C28,C3,C30,D1
lof_cds	Chr2	1081235	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	50	A19,A25,A3,A9,B10,B107,B109,B111,B120,B123,B125,B126,B127,B133,B135,B136,B138,B140,B18,B20,B28,B31,B50,B6,B60,B61,B63,B66,B71,B74,B75,B80,B82,B85,B95,B96,C16,C25,C29,C30,C52,C54,C62,C67,C72,C78,C79,C87,D4,D5
typical_cds_rare	Chr2	1081247	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C49
lof_cds	Chr2	1081259	AGT	A	INDEL	2bp_deletion	frameshift_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	B29,C71
typical_cds_rare	Chr2	1081259	AGT	A	INDEL	2bp_deletion	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	B29,C71
typical_cds_rare	Chr2	1081275	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	A4,C22
typical_cds_rare	Chr2	1081292	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	A16,C14
typical_cds_rare	Chr2	1081310	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	A14
typical_cds_rare	Chr2	1081331	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C47
typical_cds_rare	Chr2	1081336	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	B54
lof_cds	Chr2	1081337	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	37	A23,A25,B100,B103,B11,B114,B122,B128,B129,B133,B134,B14,B34,B38,B39,B41,B47,B48,B57,B61,B70,B81,B88,C18,C31,C32,C35,C4,C51,C53,C60,C67,C68,C76,C77,C8,C84
typical_cds_rare	Chr2	1081341	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C58
typical_cds_rare	Chr2	1081344	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C74
lof_cds	Chr2	1081345	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C73
typical_cds_rare	Chr2	1081345	TTG	T	INDEL	2bp_deletion	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C73
lof_cds	Chr2	1081370	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	112	A1,A10,A11,A13,A16,A2,A21,A24,A3,A5,A7,A8,B1,B100,B101,B105,B106,B11,B110,B114,B115,B117,B124,B126,B127,B128,B131,B132,B136,B138,B140,B19,B2,B22,B23,B24,B27,B3,B31,B33,B36,B37,B38,B39,B4,B42,B44,B47,B49,B54,B57,B59,B6,B60,B64,B68,B7,B71,B73,B74,B76,B77,B79,B81,B82,B85,B86,B88,B89,B90,B91,B93,B96,C10,C11,C14,C17,C18,C19,C21,C22,C23,C24,C25,C26,C29,C3,C30,C31,C34,C35,C36,C42,C44,C45,C48,C49,C59,C61,C63,C65,C67,C69,C75,C8,C80,C81,C82,C84,D3,D4,D6
lof_cds	Chr2	1081376	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	C52,D2
typical_cds_rare	Chr2	1081376	T	TA	INDEL	1bp_insertion	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	C52,D2
typical_cds_rare	Chr2	1081488	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	4	B139,B54,B98,C27
typical_cds_rare	Chr2	1081514	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	3	A14,B13,B96
typical_cds_rare	Chr2	1081516	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	5	B1,C18,C61,C63,C67
typical_cds_rare	Chr2	1081524	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	3	B73,C27,C28
typical_cds_rare	Chr2	1081527	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	4	A14,B107,B52,C74
lof_cds	Chr2	1081528	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	34	A18,A22,A3,B105,B110,B115,B125,B131,B135,B18,B32,B33,B44,B50,B60,B7,B74,B81,B86,B89,B95,B98,C19,C21,C25,C27,C3,C41,C43,C48,C61,C62,C80,D10
typical_cds_rare	Chr2	1081532	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	5	B35,B36,C29,C6,D4
typical_cds_rare	Chr2	1081570	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	3	A18,B91,C61
typical_cds_rare	Chr2	1081621	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	A16,D10
typical_cds_rare	Chr2	1081630	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	B57,C54
lof_cds	Chr2	1081635	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	61	A18,A21,A3,B101,B108,B110,B112,B113,B120,B121,B124,B13,B131,B132,B16,B17,B19,B21,B22,B25,B27,B35,B36,B40,B45,B46,B49,B51,B54,B6,B67,B78,B83,B88,B89,B9,B94,C1,C17,C19,C33,C34,C35,C36,C45,C56,C61,C63,C7,C70,C72,C75,C78,C80,C83,C84,C85,D2,D5,D6,D8
typical_cds_rare	Chr2	1081821	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	3	B57,C3,C54
lof_cds	Chr2	1081828	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	9	B106,B46,B80,B93,B99,C11,C60,C69,C71
typical_cds_rare	Chr2	1081841	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	A9,B123
typical_cds_rare	Chr2	1081842	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	4	B18,B60,C11,C62
typical_cds_rare	Chr2	1081861	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C22
typical_cds_rare	Chr2	1081887	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	5	B83,C11,C25,C62,C79
typical_cds_rare	Chr2	1081905	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	B29,C71
typical_cds_rare	Chr2	1081908	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	B33
lof_cds	Chr2	1082038	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C70
typical_cds_rare	Chr2	1082038	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C70
typical_cds_rare	Chr2	1082044	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	4	B15,B26,C5,C55
typical_cds_rare	Chr2	1082053	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	B41
typical_cds_rare	Chr2	1082054	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	A14
typical_cds_rare	Chr2	1082125	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	C22,C6
typical_cds_rare	Chr2	1082227	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C53
lof_cds	Chr2	1082237	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C4
typical_cds_rare	Chr2	1082237	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C4
typical_cds_rare	Chr2	1082245	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	B93
lof_cds	Chr2	1082307	TAA	T	INDEL	2bp_deletion	frameshift_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	4	B50,C16,C29,C31
typical_cds_rare	Chr2	1082307	TAA	T	INDEL	2bp_deletion	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	4	B50,C16,C29,C31
typical_cds_rare	Chr2	1082318	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	3	B134,C28,C41
typical_cds_rare	Chr2	1082326	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	B16,B3
typical_cds_rare	Chr2	1082339	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	A24,B64
typical_cds_rare	Chr2	1082343	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	A4,C22
lof_cds	Chr2	1082344	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	16	A13,A22,B108,B112,B118,B123,B138,B4,B82,C11,C23,C26,C34,C44,C69,C80
typical_cds_rare	Chr2	1082350	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	B72,C39
typical_cds_rare	Chr2	1082355	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	A14
typical_cds_rare	Chr2	1082365	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	B73
typical_cds_rare	Chr2	1082367	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	B136
typical_cds_rare	Chr2	1082373	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	2	A4,C22
typical_cds_rare	Chr2	1082374	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	5	B126,B20,C42,C46,C5
typical_cds_rare	Chr2	1082383	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	3	B107,B52,C74
typical_cds_rare	Chr2	1082389	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	B73
typical_cds_rare	Chr2	1082413	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C79
typical_cds_rare	Chr2	1082415	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C52
typical_cds_rare	Chr2	1082428	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012515	SmilChr02G000082	131012515	rna-XM_057940514.1	1	C79