source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr2	7879241	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1	1	B35
typical_cds_rare	Chr2	7879241	G	GA	INDEL	1bp_insertion	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1	1	B35
lof_cds	Chr2	7879242	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1	1	B35
typical_cds_rare	Chr2	7879242	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1	1	B35
lof_cds	Chr2	7879261	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1	3	B125,B35,C12
typical_cds_rare	Chr2	7879261	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1	3	B125,B35,C12
typical_cds_rare	Chr2	7879272	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1	2	B115,C83
typical_cds_rare	Chr2	7879277	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1	2	B115,C83
lof_cds	Chr2	7879299	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1	5	B1,B125,B35,B50,C12
typical_cds_rare	Chr2	7879299	TTG	T	INDEL	2bp_deletion	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1	5	B1,B125,B35,B50,C12
typical_cds_rare	Chr2	7879359	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1	3	B15,C45,D11
typical_cds_rare	Chr2	7879455	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1	1	B135
typical_cds_rare	Chr2	7879469	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1	3	B137,B35,B67
typical_cds_rare	Chr2	7879509	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1	1	A18
lof_cds	Chr2	7879516	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1	66	A10,A13,A16,A19,A5,B1,B102,B106,B108,B114,B117,B118,B12,B123,B128,B129,B137,B138,B139,B16,B31,B35,B36,B38,B39,B4,B41,B51,B52,B54,B57,B58,B62,B67,B7,B85,B89,B91,B95,C1,C10,C11,C14,C22,C23,C25,C30,C31,C38,C44,C46,C47,C49,C51,C52,C54,C56,C57,C65,C67,C69,C71,C80,C81,C83,C9
lof_cds	Chr2	7879669	G	GGA	INDEL	2bp_insertion	frameshift_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1	6	B129,B55,B63,C17,C59,D8
lof_cds	Chr2	7879746	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	10	B129,B20,B3,B55,B63,C12,C32,C39,C59,D8
lof_cds	Chr2	7879760	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	98	A11,A13,A19,A5,B1,B100,B101,B102,B106,B114,B118,B12,B120,B121,B123,B124,B127,B128,B129,B134,B137,B139,B15,B16,B24,B26,B31,B35,B36,B38,B41,B42,B43,B46,B48,B51,B52,B53,B54,B56,B57,B58,B60,B66,B67,B7,B75,B77,B78,B83,B85,B88,B91,B95,B98,C1,C11,C12,C13,C14,C18,C19,C20,C22,C23,C26,C27,C29,C30,C31,C41,C44,C45,C47,C48,C51,C52,C53,C56,C57,C64,C65,C66,C67,C69,C79,C80,C81,C82,C83,C84,C85,D1,D11,D2,D4,D5,D7
lof_cds	Chr2	7879762	T	TTA	INDEL	2bp_insertion	frameshift_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	4	B124,B15,C27,D2
typical_cds_rare	Chr2	7879762	T	TTA	INDEL	2bp_insertion	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	4	B124,B15,C27,D2
lof_cds	Chr2	7879763	G	GAC	INDEL	2bp_insertion	frameshift_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	87	A13,A19,A5,B1,B100,B101,B102,B106,B114,B118,B12,B120,B121,B123,B127,B128,B129,B137,B139,B16,B24,B26,B31,B35,B36,B38,B41,B42,B43,B46,B48,B51,B52,B54,B56,B57,B58,B60,B66,B67,B7,B75,B77,B83,B85,B88,B91,B95,B98,C1,C11,C13,C14,C18,C19,C20,C22,C23,C29,C30,C31,C41,C44,C47,C48,C51,C52,C53,C56,C57,C64,C65,C66,C67,C69,C79,C80,C81,C82,C83,C84,C85,D1,D11,D4,D5,D7
lof_cds	Chr2	7879767	T	TAA	INDEL	2bp_insertion	frameshift_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	91	A19,A22,B1,B100,B101,B102,B106,B114,B118,B12,B120,B121,B123,B124,B127,B128,B129,B137,B139,B15,B16,B19,B24,B26,B31,B35,B36,B38,B41,B42,B43,B46,B48,B51,B52,B54,B56,B57,B58,B60,B66,B67,B7,B75,B77,B83,B85,B91,B95,B98,C1,C11,C13,C14,C18,C19,C20,C22,C23,C27,C29,C30,C31,C41,C44,C45,C47,C48,C51,C52,C53,C56,C57,C64,C65,C66,C67,C69,C71,C79,C80,C81,C82,C83,C84,C85,D1,D11,D2,D5,D7
lof_cds	Chr2	7879888	G	GTC	INDEL	2bp_insertion	frameshift_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	43	A13,A14,A18,A21,A22,A6,A9,B100,B101,B103,B105,B117,B119,B127,B140,B15,B16,B25,B26,B27,B31,B37,B40,B41,B42,B43,B5,B59,B6,B75,B76,B98,C26,C28,C38,C43,C48,C5,C73,C84,C85,D1,D4
typical_cds_rare	Chr2	7879933	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	2	A23,B24
typical_cds_rare	Chr2	7879978	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	1	A23
typical_cds_rare	Chr2	7879986	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	4	A16,A23,B137,B67
typical_cds_rare	Chr2	7880023	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	2	B35,B67
lof_cds	Chr2	7880060	GCC	G	INDEL	2bp_deletion	frameshift_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	1	B69
typical_cds_rare	Chr2	7880060	GCC	G	INDEL	2bp_deletion	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	1	B69
lof_cds	Chr2	7880069	AAC	A	INDEL	2bp_deletion	frameshift_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	56	A13,A14,A21,A22,A6,A9,B102,B103,B105,B117,B119,B127,B128,B137,B140,B19,B2,B25,B26,B27,B31,B32,B37,B40,B43,B5,B59,B6,B60,B66,B71,B75,B76,B80,B94,B98,C13,C26,C27,C28,C38,C43,C45,C5,C53,C54,C57,C62,C63,C72,C73,C8,C84,D1,D3,D4
lof_cds	Chr2	7880076	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	57	A13,A14,A21,A22,A6,A9,B102,B103,B105,B117,B119,B127,B128,B137,B140,B19,B2,B25,B26,B27,B31,B32,B37,B40,B43,B5,B59,B6,B60,B66,B69,B71,B75,B76,B80,B94,B98,C13,C26,C27,C28,C38,C43,C45,C5,C53,C54,C57,C62,C63,C72,C73,C8,C84,D1,D3,D4
typical_cds_rare	Chr2	7880078	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	2	C58,C82
typical_cds_rare	Chr2	7880198	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	1	B137
typical_cds_rare	Chr2	7880199	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	1	C31
typical_cds_rare	Chr2	7880220	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	3	B137,B35,B67
typical_cds_rare	Chr2	7880253	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	2	B35,B67
typical_cds_rare	Chr2	7880319	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	2	C32,C68
typical_cds_rare	Chr2	7880329	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	1	B36
lof_cds	Chr2	7880333	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	116	A10,A15,A19,A20,A22,A25,A3,A4,A6,A7,A8,B1,B105,B106,B109,B11,B110,B111,B113,B114,B117,B118,B119,B120,B123,B125,B128,B129,B130,B131,B132,B134,B136,B139,B14,B27,B28,B29,B31,B33,B36,B38,B39,B41,B44,B47,B51,B52,B57,B58,B6,B61,B64,B65,B67,B70,B72,B74,B8,B81,B83,B84,B86,B87,B89,B90,B92,B95,B97,C1,C10,C11,C12,C14,C16,C17,C18,C19,C21,C23,C25,C26,C28,C3,C33,C34,C35,C36,C37,C39,C4,C41,C46,C47,C49,C50,C51,C58,C59,C6,C62,C65,C67,C69,C71,C73,C74,C75,C76,C77,C78,C86,C9,D1,D6,D8
lof_cds	Chr2	7880334	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	1	B35
typical_cds_rare	Chr2	7880334	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	1	B35
typical_cds_rare	Chr2	7880346	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	2	B106,B35
lof_cds	Chr2	7880375	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	1	B35
typical_cds_rare	Chr2	7880375	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	1	B35
typical_cds_rare	Chr2	7880468	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	1	A9
lof_cds	Chr2	7880485	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	2	B35,B67
typical_cds_rare	Chr2	7880485	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	2	B35,B67
typical_cds_rare	Chr2	7880524	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	1	C60
typical_cds_rare	Chr2	7880565	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	3	B34,B73,B81
lof_cds	Chr2	7880601	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	15	A16,A3,B1,B14,B46,B49,B68,B72,B88,C30,C40,C75,C87,D5,D7
lof_cds	Chr2	7880638	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	1	A9
typical_cds_rare	Chr2	7880638	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	1	A9
typical_cds_rare	Chr2	7880671	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	4	B111,B78,C82,D9
typical_cds_rare	Chr2	7880762	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131012907	SmilChr02G000559	131012907	rna-XM_057940882.1,rna-XM_057940884.1	3	A1,B49,C30