source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr2	10554059	CTT	C	INDEL	2bp_deletion	frameshift_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	3	B135,B137,B8
typical_cds_rare	Chr2	10554059	CTT	C	INDEL	2bp_deletion	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	3	B135,B137,B8
typical_cds_rare	Chr2	10554079	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	3	B40,C78,D5
lof_cds	Chr2	10554080	TAG	T	INDEL	2bp_deletion	frameshift_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	33	B102,B107,B14,B21,B22,B23,B24,B26,B30,B40,B53,B6,B63,B91,C13,C17,C2,C23,C3,C32,C34,C36,C40,C47,C5,C68,C76,C78,C86,D1,D10,D5,D9
lof_cds	Chr2	10554086	G	GAA	INDEL	2bp_insertion	frameshift_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	B21
typical_cds_rare	Chr2	10554086	G	GAA	INDEL	2bp_insertion	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	B21
lof_cds	Chr2	10554090	G	GAT	INDEL	2bp_insertion	frameshift_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	3	B40,C78,D5
typical_cds_rare	Chr2	10554090	G	GAT	INDEL	2bp_insertion	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	3	B40,C78,D5
typical_cds_rare	Chr2	10554109	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	B102
typical_cds_rare	Chr2	10554153	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	5	B135,B137,B41,B74,D8
typical_cds_rare	Chr2	10554160	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	C78,D5
typical_cds_rare	Chr2	10554186	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	B113
typical_cds_rare	Chr2	10554207	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	3	B113,D6,D8
typical_cds_rare	Chr2	10554208	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	5	A4,B36,B94,C14,D11
typical_cds_rare	Chr2	10554215	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	C78,D5
typical_cds_rare	Chr2	10554293	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	3	C46,C48,D6
typical_cds_rare	Chr2	10554294	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	C46,D6
lof_cds	Chr2	10554342	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	A13,B15
typical_cds_rare	Chr2	10554342	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	A13,B15
typical_cds_rare	Chr2	10554366	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	B15,C46
lof_cds	Chr2	10554382	TAA	T	INDEL	2bp_deletion	frameshift_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	B33
typical_cds_rare	Chr2	10554382	TAA	T	INDEL	2bp_deletion	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	B33
typical_cds_rare	Chr2	10554395	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	B47,C21
typical_cds_rare	Chr2	10554409	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	3	B109,B15,C46
lof_cds	Chr2	10554411	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	C27
typical_cds_rare	Chr2	10554411	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	C27
lof_cds	Chr2	10554471	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	19	A21,A25,B113,B123,B27,B28,B4,B44,B5,B62,B66,C11,C18,C26,C67,C69,C73,C80,C83
lof_cds	Chr2	10554472	A	AT	INDEL	1bp_insertion	stop_gained,frameshift_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	B80
typical_cds_rare	Chr2	10554472	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	B80
lof_cds	Chr2	10554524	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	C78,D5
typical_cds_rare	Chr2	10554524	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	C78,D5
lof_cds	Chr2	10554600	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	B64
typical_cds_rare	Chr2	10554600	C	CG	INDEL	1bp_insertion	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	B64
lof_cds	Chr2	10554779	AGT	A	INDEL	2bp_deletion	frameshift_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	C71
typical_cds_rare	Chr2	10554779	AGT	A	INDEL	2bp_deletion	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	C71
typical_cds_rare	Chr2	10554786	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	3	A22,B74,C78
typical_cds_rare	Chr2	10554801	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	B1,B35
typical_cds_rare	Chr2	10554837	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	5	A19,B1,B117,B94,C49
typical_cds_rare	Chr2	10554855	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	4	B119,B67,B8,C71
typical_cds_rare	Chr2	10554858	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	B8,C78
typical_cds_rare	Chr2	10554867	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	D10
lof_cds	Chr2	10554935	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	14	B105,B125,B40,B43,B52,B68,B90,B92,C1,C21,C50,C61,C72,C73
lof_cds	Chr2	10555008	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	11	B105,B125,B40,B43,B68,B92,C1,C21,C50,C61,C73
lof_cds	Chr2	10555047	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	9	B105,B125,B43,B68,C1,C21,C50,C61,C73
typical_cds_rare	Chr2	10555089	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	3	B45,B78,C84
lof_cds	Chr2	10555271	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	8	A14,B121,B22,B24,B79,C20,C41,C52
typical_cds_rare	Chr2	10555389	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	A6
typical_cds_rare	Chr2	10555408	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	A6
lof_cds	Chr2	10555467	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	11	A11,A15,B119,B39,B47,B53,B58,B65,B67,C23,C42
typical_cds_rare	Chr2	10555677	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	5	B113,B135,B137,B74,C86
typical_cds_rare	Chr2	10555736	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	B65,B89
typical_cds_rare	Chr2	10555875	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	5	A16,B33,B46,C30,C60
lof_cds	Chr2	10555910	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	7	B128,B130,B32,B7,C54,C57,C59
typical_cds_rare	Chr2	10555951	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	B104
lof_cds	Chr2	10555963	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	B125
typical_cds_rare	Chr2	10555963	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	B125
typical_cds_rare	Chr2	10555975	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	3	C15,C34,D6
typical_cds_rare	Chr2	10555985	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	C34,D6
lof_cds	Chr2	10556091	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	A13
typical_cds_rare	Chr2	10556091	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	A13
lof_cds	Chr2	10556163	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	6	B85,C11,C42,C58,C69,C87
lof_cds	Chr2	10556182	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	A13
typical_cds_rare	Chr2	10556182	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	A13
lof_cds	Chr2	10556292	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	B82
typical_cds_rare	Chr2	10556292	A	AG	INDEL	1bp_insertion	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	B82
typical_cds_rare	Chr2	10556521	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	C50,C7
typical_cds_rare	Chr2	10556528	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	C60
typical_cds_rare	Chr2	10556544	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	B135,C70
typical_cds_rare	Chr2	10556550	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	B76
lof_cds	Chr2	10556601	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	C12
typical_cds_rare	Chr2	10556601	A	AC	INDEL	1bp_insertion	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	C12
typical_cds_rare	Chr2	10556602	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	1	C12
lof_cds	Chr2	10556617	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	C30,C60
typical_cds_rare	Chr2	10556617	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	C30,C60
lof_cds	Chr2	10556640	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	11	A9,B20,B36,B80,B94,B99,C14,D11,D2,D4,D5
lof_cds	Chr2	10556648	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	B120,D10
typical_cds_rare	Chr2	10556648	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	B120,D10
typical_cds_rare	Chr2	10556692	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131007983	SmilChr02G000676	131007983	rna-XM_057934890.1	2	B130,C52