source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr2	14410321	CTA	C	INDEL	2bp_deletion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B47
typical_cds_rare	Chr2	14410321	CTA	C	INDEL	2bp_deletion	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B47
lof_cds	Chr2	14410329	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	16	A21,A4,B104,B105,B114,B12,B124,B4,B85,B94,C44,C54,C58,C85,D1,D5
lof_cds	Chr2	14410341	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B47,C33
typical_cds_rare	Chr2	14410341	GC	G	INDEL	1bp_deletion	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B47,C33
lof_cds	Chr2	14410379	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B2
typical_cds_rare	Chr2	14410379	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B2
lof_cds	Chr2	14410410	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	5	B118,B68,C54,C55,D8
typical_cds_rare	Chr2	14410410	G	GT	INDEL	1bp_insertion	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	5	B118,B68,C54,C55,D8
lof_cds	Chr2	14410442	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B104
typical_cds_rare	Chr2	14410442	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B104
lof_cds	Chr2	14410445	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	D11
typical_cds_rare	Chr2	14410445	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	D11
typical_cds_rare	Chr2	14410493	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B82,C54
lof_cds	Chr2	14410511	AAC	A	INDEL	2bp_deletion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	92	A11,A15,A16,A18,A21,A22,A24,A3,A6,A7,B10,B100,B102,B107,B109,B11,B112,B114,B122,B132,B134,B135,B139,B15,B18,B20,B24,B25,B26,B27,B28,B36,B38,B39,B40,B41,B49,B5,B51,B53,B56,B58,B59,B6,B62,B64,B66,B71,B75,B80,B85,B88,B9,B93,B96,B98,B99,C10,C14,C16,C18,C19,C2,C24,C25,C3,C30,C32,C34,C38,C40,C43,C44,C46,C48,C54,C62,C63,C65,C67,C68,C74,C78,C79,C80,C81,C86,C87,C9,D3,D4,D6
typical_cds_rare	Chr2	14410536	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B47
lof_cds	Chr2	14410558	ACT	A	INDEL	2bp_deletion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	8	A11,A18,B107,B122,B49,C32,C68,C87
lof_cds	Chr2	14410561	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	73	A11,A14,A16,A20,A21,A23,A25,A4,A5,A7,A8,B100,B105,B114,B117,B12,B121,B122,B124,B128,B130,B131,B136,B138,B140,B2,B22,B23,B26,B32,B4,B45,B47,B49,B52,B55,B57,B63,B64,B66,B68,B72,B73,B77,B79,B80,B81,B84,B85,B9,B94,C14,C23,C33,C37,C44,C45,C46,C47,C51,C54,C55,C58,C73,C78,C84,C85,C86,D1,D10,D2,D5,D8
lof_cds	Chr2	14410562	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	29	A2,A25,B100,B102,B118,B120,B123,B129,B131,B27,B28,B4,B44,B91,C11,C18,C37,C47,C48,C54,C61,C65,C67,C69,C73,C80,C83,C86,C9
lof_cds	Chr2	14410566	T	TAC	INDEL	2bp_insertion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B36,B56
typical_cds_rare	Chr2	14410566	T	TAC	INDEL	2bp_insertion	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B36,B56
lof_cds	Chr2	14410574	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B36,B56
typical_cds_rare	Chr2	14410574	T	TG	INDEL	1bp_insertion	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B36,B56
lof_cds	Chr2	14410579	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B36,B56
typical_cds_rare	Chr2	14410579	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B36,B56
lof_cds	Chr2	14410584	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B36,B56
typical_cds_rare	Chr2	14410584	C	CAT	INDEL	2bp_insertion	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B36,B56
typical_cds_rare	Chr2	14410595	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B4,C44
lof_cds	Chr2	14410606	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B56
typical_cds_rare	Chr2	14410606	T	TA	INDEL	1bp_insertion	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B56
typical_cds_rare	Chr2	14410614	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	C50
typical_cds_rare	Chr2	14410625	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	3	B12,B47,B55
lof_cds	Chr2	14410639	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	3	C45,C58,D3
typical_cds_rare	Chr2	14410639	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	3	C45,C58,D3
typical_cds_rare	Chr2	14410644	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B4,D5
lof_cds	Chr2	14410682	G	GAA	INDEL	2bp_insertion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	21	A1,B1,B101,B107,B108,B111,B123,B133,B14,B3,B47,B48,B55,B57,B7,B74,B78,C13,C23,C41,C56
lof_cds	Chr2	14410685	G	GAT	INDEL	2bp_insertion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	88	A10,A19,A2,A23,B10,B101,B103,B106,B109,B112,B113,B115,B117,B118,B121,B122,B123,B124,B129,B13,B134,B135,B137,B138,B140,B15,B16,B19,B28,B42,B43,B46,B52,B53,B54,B6,B64,B66,B68,B69,B77,B8,B81,B82,B84,B86,B87,B93,C1,C12,C15,C16,C19,C20,C21,C22,C26,C3,C32,C33,C34,C39,C4,C42,C47,C50,C51,C55,C61,C68,C71,C72,C76,C78,C79,C8,C80,C82,C83,C84,D1,D2,D3,D4,D5,D6,D8,D9
typical_cds_rare	Chr2	14410700	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B104
lof_cds	Chr2	14410737	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	9	A11,A18,A4,B107,B49,B68,C32,C68,C87
lof_cds	Chr2	14410738	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	7	B12,B122,B2,B77,C32,C42,C68
typical_cds_rare	Chr2	14410747	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	A2
typical_cds_rare	Chr2	14410755	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	4	B2,B23,B4,C44
typical_cds_rare	Chr2	14410797	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	5	A11,A18,B107,C32,C87
typical_cds_rare	Chr2	14410835	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B28
typical_cds_rare	Chr2	14410859	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B104
lof_cds	Chr2	14410919	TGG	T	INDEL	2bp_deletion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	26	A14,A16,A20,A23,A25,A7,B121,B124,B128,B130,B131,B136,B138,B15,B26,B32,B45,B63,B80,B81,B84,C33,C37,C46,C73,C84
lof_cds	Chr2	14410939	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B47,C33
typical_cds_rare	Chr2	14410939	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B47,C33
typical_cds_rare	Chr2	14410958	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	4	B47,B68,C33,C62
typical_cds_rare	Chr2	14410969	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B42
typical_cds_rare	Chr2	14410971	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	A24
lof_cds	Chr2	14411056	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B54
typical_cds_rare	Chr2	14411056	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B54
lof_cds	Chr2	14411076	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	38	A14,A16,A20,A21,A25,A4,A5,A8,B100,B104,B105,B121,B124,B128,B130,B131,B136,B26,B45,B49,B55,B66,B79,B80,B85,B9,B94,C33,C44,C45,C54,C58,C73,C84,C85,D1,D10,D5
lof_cds	Chr2	14411168	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	9	B140,B4,B74,B84,C1,C71,C72,D5,D8
typical_cds_rare	Chr2	14411197	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B54,C15
lof_cds	Chr2	14411207	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	24	A2,A21,A4,A8,B100,B104,B105,B114,B124,B49,B66,B79,B85,B9,B94,C37,C44,C45,C54,C58,C85,D1,D10,D5
typical_cds_rare	Chr2	14411228	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B21
typical_cds_rare	Chr2	14411230	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	3	B21,B47,C33
typical_cds_rare	Chr2	14411240	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B21
typical_cds_rare	Chr2	14411332	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B104
typical_cds_rare	Chr2	14411360	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	A14,A9
typical_cds_rare	Chr2	14411364	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	5	B53,B69,B74,C78,D2
lof_cds	Chr2	14411377	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B13,B73
typical_cds_rare	Chr2	14411377	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	2	B13,B73
lof_cds	Chr2	14411378	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	58	A14,A15,A16,A22,A24,A9,B10,B102,B104,B107,B111,B115,B12,B121,B122,B126,B131,B135,B137,B14,B15,B23,B3,B34,B35,B4,B41,B5,B54,B58,B65,B68,B70,B8,B82,C12,C15,C20,C24,C30,C32,C34,C35,C36,C4,C40,C44,C49,C50,C56,C60,C65,C68,C72,C74,C76,C77,C78
lof_cds	Chr2	14411382	A	AAT	INDEL	2bp_insertion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B73
typical_cds_rare	Chr2	14411382	A	AAT	INDEL	2bp_insertion	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B73
typical_cds_rare	Chr2	14411490	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B2
typical_cds_rare	Chr2	14411491	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B2
typical_cds_rare	Chr2	14411514	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	3	A15,B54,C15
lof_cds	Chr2	14411537	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B41
typical_cds_rare	Chr2	14411537	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	B41
typical_cds_rare	Chr2	14411556	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	3	B104,B107,C36
typical_cds_rare	Chr2	14411564	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	1	A24
lof_cds	Chr2	14411624	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	53	A14,A16,A20,A21,A23,A25,A4,A5,A7,A8,B100,B104,B105,B114,B12,B121,B124,B128,B130,B131,B136,B138,B15,B26,B32,B4,B45,B47,B49,B55,B63,B66,B72,B79,B80,B81,B84,B85,B9,B94,C33,C37,C44,C45,C46,C54,C58,C73,C84,C85,D1,D10,D5
lof_cds	Chr2	14411667	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC131008027	SmilChr02G000848	131008027	rna-XM_057934931.1	16	A15,A24,B104,B107,B12,B23,B35,B4,B41,B54,C15,C32,C35,C4,C68,C76