source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr2	15242168	A	ATT	INDEL	2bp_insertion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	25	A15,A6,B105,B114,B135,B47,B56,B63,B64,B66,B8,B83,B96,C12,C21,C4,C40,C46,C47,C52,C57,C84,C86,D1,D9
typical_cds_rare	Chr2	15242183	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	1	D11
typical_cds_rare	Chr2	15242189	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	5	B108,B111,B117,C23,C36
typical_cds_rare	Chr2	15242198	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	2	B86,D8
typical_cds_rare	Chr2	15242214	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	1	B93
typical_cds_rare	Chr2	15242246	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	1	B40
lof_cds	Chr2	15242429	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	17	A18,A22,B100,B12,B2,B37,B56,B6,B64,B96,C27,C32,C43,C63,C68,C74,C83
typical_cds_rare	Chr2	15242461	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	5	B117,B63,B83,C27,D4
typical_cds_rare	Chr2	15242463	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	3	B63,B83,C18
typical_cds_rare	Chr2	15242465	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	4	A1,A23,B70,B98
lof_cds	Chr2	15242507	ATC	A	INDEL	2bp_deletion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	3	A15,B38,B39
typical_cds_rare	Chr2	15242507	ATC	A	INDEL	2bp_deletion	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	3	A15,B38,B39
lof_cds	Chr2	15242537	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	33	A6,B101,B102,B103,B104,B108,B111,B117,B128,B134,B137,B16,B18,B29,B41,B50,B60,B61,B70,B8,B81,B85,C15,C23,C31,C36,C49,C50,C55,C57,C61,C75,D9
typical_cds_rare	Chr2	15242576	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	5	B114,B140,B95,C14,C8
typical_cds_rare	Chr2	15242623	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	2	B56,B96
typical_cds_rare	Chr2	15242649	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	5	B34,B41,B61,B73,B81
lof_cds	Chr2	15242688	CTT	C	INDEL	2bp_deletion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	6	A19,A24,B25,B59,C47,D2
lof_cds	Chr2	15242706	A	ATC	INDEL	2bp_insertion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	24	A10,B103,B134,B29,B30,B36,B40,B64,B68,B84,C16,C17,C2,C26,C30,C35,C45,C5,C7,C75,C80,C84,D10,D2
typical_cds_rare	Chr2	15242735	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	2	A19,B59
lof_cds	Chr2	15242747	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	2	A19,B59
typical_cds_rare	Chr2	15242747	C	CG	INDEL	1bp_insertion	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	2	A19,B59
lof_cds	Chr2	15242749	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	2	A19,B59
typical_cds_rare	Chr2	15242749	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	2	A19,B59
typical_cds_rare	Chr2	15242751	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	5	B108,B111,B117,C23,C36
lof_cds	Chr2	15242754	GGC	G	INDEL	2bp_deletion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	2	A19,B59
typical_cds_rare	Chr2	15242754	GGC	G	INDEL	2bp_deletion	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	2	A19,B59
typical_cds_rare	Chr2	15242905	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	3	B106,B136,B55
typical_cds_rare	Chr2	15242909	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	3	B33,B46,C60
typical_cds_rare	Chr2	15243008	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	4	B34,B41,B61,B81
lof_cds	Chr2	15243024	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	1	D8
typical_cds_rare	Chr2	15243024	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	1	D8
typical_cds_rare	Chr2	15243112	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	1	C10
lof_cds	Chr2	15243114	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	34	A20,A25,B10,B101,B107,B113,B122,B127,B128,B129,B13,B131,B135,B14,B32,B33,B40,B61,B67,B73,B74,B77,B79,B8,B81,B91,B95,C28,C29,C3,C36,C46,C63,D10
typical_cds_rare	Chr2	15243141	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	1	B93
typical_cds_rare	Chr2	15243155	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	1	B93
typical_cds_rare	Chr2	15243158	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	1	D10
lof_cds	Chr2	15243170	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	4	B114,B140,B95,C8
typical_cds_rare	Chr2	15243170	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	4	B114,B140,B95,C8
typical_cds_rare	Chr2	15243183	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	4	B114,B140,B95,C8
lof_cds	Chr2	15243235	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	12	A4,B105,B114,B22,B23,B85,B9,C33,C54,C58,C65,C85
typical_cds_rare	Chr2	15243247	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	2	C8,D7
typical_cds_rare	Chr2	15243252	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	5	B34,B41,B61,B73,B81
typical_cds_rare	Chr2	15243259	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939114.1,rna-XM_057939115.1	5	B34,B41,B61,B73,B81
lof_cds	Chr2	15243525	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	65	A10,A13,A14,A15,A18,A23,A24,A3,A6,B105,B106,B107,B108,B109,B119,B120,B133,B135,B136,B138,B139,B19,B21,B29,B31,B35,B42,B43,B45,B46,B53,B54,B55,B57,B65,B66,B69,B71,B8,B84,B88,B89,B91,C12,C15,C17,C24,C29,C38,C43,C49,C51,C52,C54,C57,C6,C61,C77,C79,C86,C9,D1,D4,D6,D9
lof_cds	Chr2	15243533	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	81	A10,A14,A24,A4,A6,B101,B102,B103,B104,B105,B112,B114,B117,B128,B134,B137,B16,B18,B22,B23,B28,B29,B30,B35,B36,B40,B41,B46,B50,B60,B61,B63,B64,B68,B70,B8,B81,B83,B84,B85,B86,B9,C15,C16,C17,C18,C2,C24,C26,C27,C30,C31,C33,C35,C45,C48,C49,C5,C50,C51,C54,C55,C57,C58,C59,C61,C65,C7,C75,C76,C79,C80,C84,C85,D1,D10,D11,D2,D3,D4,D9
lof_cds	Chr2	15243586	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	39	A6,A8,B10,B100,B102,B109,B110,B125,B132,B18,B19,B25,B34,B41,B52,B58,B60,B63,B86,B87,B9,B90,B92,B94,B99,C1,C10,C18,C21,C28,C35,C41,C6,C7,C73,C75,C79,C86,D2
typical_cds_rare	Chr2	15243600	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	5	B114,B140,B95,C14,C8
typical_cds_rare	Chr2	15243618	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	2	A13,A24
typical_cds_rare	Chr2	15243691	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	2	A13,A24
typical_cds_rare	Chr2	15243693	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	3	B35,B64,C24
lof_cds	Chr2	15243727	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	93	A10,A13,A16,A24,A4,A5,A7,A8,B1,B103,B104,B105,B11,B111,B117,B118,B12,B120,B121,B123,B125,B128,B129,B130,B132,B133,B134,B139,B15,B17,B20,B21,B25,B27,B29,B3,B31,B36,B38,B39,B45,B47,B48,B5,B55,B6,B67,B68,B69,B7,B75,B78,B82,B83,B85,B87,B88,B90,B94,B97,C11,C12,C13,C14,C19,C20,C23,C3,C30,C33,C39,C41,C42,C47,C49,C5,C51,C53,C58,C59,C64,C65,C66,C67,C69,C7,C70,C72,C80,C82,C87,C9,D8
typical_cds_rare	Chr2	15243743	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	1	B14
typical_cds_rare	Chr2	15243748	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	1	D11
lof_cds	Chr2	15243752	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	16	A22,B100,B12,B2,B37,B56,B6,B64,B96,C27,C32,C43,C63,C68,C74,C83
lof_cds	Chr2	15243770	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	1	D11
typical_cds_rare	Chr2	15243770	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	1	D11
typical_cds_rare	Chr2	15243826	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	3	B23,C27,C44
typical_cds_rare	Chr2	15243857	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	5	B34,B41,B61,B73,B81
lof_cds	Chr2	15243864	A	AAT	INDEL	2bp_insertion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	158	A1,A11,A13,A15,A18,A19,A2,A20,A21,A22,A23,A24,A25,A4,A6,A8,A9,B1,B10,B101,B103,B104,B107,B110,B111,B112,B113,B117,B118,B121,B122,B124,B126,B127,B128,B129,B130,B131,B132,B134,B135,B136,B137,B138,B139,B14,B18,B19,B2,B22,B23,B24,B25,B26,B28,B3,B30,B33,B37,B38,B39,B4,B40,B42,B43,B44,B45,B49,B5,B50,B52,B53,B54,B56,B57,B58,B60,B61,B65,B68,B69,B71,B74,B75,B77,B78,B79,B8,B81,B82,B84,B86,B87,B88,B9,B90,B91,B92,B94,B95,B96,B97,C10,C11,C12,C13,C14,C15,C16,C19,C2,C20,C21,C22,C23,C25,C26,C27,C3,C32,C33,C34,C36,C37,C39,C4,C40,C41,C42,C44,C48,C5,C50,C52,C53,C55,C59,C6,C60,C61,C67,C68,C69,C70,C72,C73,C75,C77,C80,C81,C83,C84,C86,C87,D10,D5,D6,D7
lof_cds	Chr2	15243868	TTA	T	INDEL	2bp_deletion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	158	A1,A11,A13,A15,A18,A19,A2,A20,A21,A22,A23,A24,A25,A4,A6,A8,A9,B1,B10,B101,B103,B104,B107,B110,B111,B112,B113,B117,B118,B121,B122,B124,B126,B127,B128,B129,B130,B131,B132,B134,B135,B136,B137,B138,B139,B14,B18,B19,B2,B22,B23,B24,B25,B26,B28,B3,B30,B33,B37,B38,B39,B4,B40,B42,B43,B44,B45,B49,B5,B50,B52,B53,B54,B56,B57,B58,B60,B61,B65,B68,B69,B71,B74,B75,B77,B78,B79,B8,B81,B82,B84,B86,B87,B88,B9,B90,B91,B92,B94,B95,B96,B97,C10,C11,C12,C13,C14,C15,C16,C19,C2,C20,C21,C22,C23,C25,C26,C27,C3,C32,C33,C34,C36,C37,C39,C4,C40,C41,C42,C44,C48,C5,C50,C52,C53,C55,C59,C6,C60,C61,C67,C68,C69,C70,C72,C73,C75,C77,C80,C81,C83,C84,C86,C87,D10,D5,D6,D7
typical_cds_rare	Chr2	15243874	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	4	B33,B40,B46,C60
typical_cds_rare	Chr2	15243884	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	5	B34,B41,B61,B73,B81
typical_cds_rare	Chr2	15243902	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	1	D8
typical_cds_rare	Chr2	15243935	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	1	D8
lof_cds	Chr2	15243984	CAT	C	INDEL	2bp_deletion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	15	A11,A2,A21,B112,B122,B137,B76,B78,C16,C22,C45,C61,C76,D11,D3
typical_cds_rare	Chr2	15243991	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	4	B33,B46,B82,C60
typical_cds_rare	Chr2	15244069	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	1	D8
typical_cds_rare	Chr2	15244095	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	5	B114,B140,B95,C14,C8
lof_cds	Chr2	15244110	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	4	B104,B54,B86,D11
typical_cds_rare	Chr2	15244110	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	4	B104,B54,B86,D11
typical_cds_rare	Chr2	15244214	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	5	B114,B140,B95,C14,C8
lof_cds	Chr2	15244217	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	5	B33,B46,B82,B93,C60
typical_cds_rare	Chr2	15244217	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	5	B33,B46,B82,B93,C60
lof_cds	Chr2	15244218	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	1	D10
typical_cds_rare	Chr2	15244218	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	1	D10
lof_cds	Chr2	15244274	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	5	B114,B140,B95,C14,C8
typical_cds_rare	Chr2	15244274	CT	C	INDEL	1bp_deletion	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	5	B114,B140,B95,C14,C8
typical_cds_rare	Chr2	15244296	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	1	B93
typical_cds_rare	Chr2	15244300	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	5	B34,B41,B73,B81,B93
typical_cds_rare	Chr2	15244386	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	1	B104
typical_cds_rare	Chr2	15244421	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	2	A13,A24
typical_cds_rare	Chr2	15244427	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	4	A15,B139,B74,D10
lof_cds	Chr2	15244676	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	5	B104,B4,B66,C27,C44
typical_cds_rare	Chr2	15244676	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131011334	SmilChr02G000884	131011334	rna-XM_057939116.1	5	B104,B4,B66,C27,C44