source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr2	29879141	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	3	B80,C37,C49
typical_cds_rare	Chr2	29879145	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	5	A7,C32,C68,C81,D4
lof_cds	Chr2	29879171	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	35	A6,A7,A8,B10,B110,B127,B132,B134,B18,B19,B2,B25,B26,B31,B37,B48,B60,B63,B80,B86,B9,B99,C10,C22,C26,C28,C35,C37,C41,C49,C54,C71,C75,C87,D10
typical_cds_rare	Chr2	29879181	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	2	B133,C76
lof_cds	Chr2	29879198	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	165	A1,A10,A11,A15,A18,A19,A20,A21,A23,A24,A3,A4,A8,A9,B1,B101,B102,B103,B108,B109,B11,B110,B111,B112,B115,B118,B119,B12,B121,B125,B127,B129,B131,B132,B134,B138,B139,B140,B15,B16,B17,B18,B20,B21,B23,B25,B26,B29,B30,B32,B33,B34,B35,B36,B38,B39,B4,B41,B42,B43,B45,B46,B48,B5,B51,B53,B54,B56,B57,B58,B59,B61,B62,B65,B66,B67,B68,B69,B7,B70,B71,B72,B74,B76,B77,B78,B79,B82,B84,B85,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B99,C1,C10,C11,C12,C13,C14,C16,C19,C21,C22,C24,C26,C27,C29,C30,C33,C34,C36,C37,C4,C40,C41,C42,C44,C45,C46,C49,C5,C50,C51,C53,C54,C55,C56,C57,C58,C59,C6,C60,C62,C64,C66,C69,C7,C70,C71,C72,C74,C80,C81,C84,C85,C86,C87,D1,D11,D2,D3,D4,D5,D6,D7,D9
lof_cds	Chr2	29879216	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	7	B138,B14,B2,B48,B9,C71,D10
typical_cds_rare	Chr2	29879228	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	3	B131,B75,C60
typical_cds_rare	Chr2	29879248	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	2	B91,D11
typical_cds_rare	Chr2	29879250	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	2	B75,C60
lof_cds	Chr2	29879257	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	64	A14,A20,A22,A23,A3,A6,A7,A8,A9,B10,B100,B106,B109,B110,B121,B124,B127,B132,B14,B18,B19,B22,B24,B25,B26,B31,B37,B40,B55,B6,B60,B63,B68,B83,B86,B87,B9,B99,C10,C22,C26,C28,C34,C35,C40,C41,C48,C49,C57,C6,C62,C63,C7,C75,C78,C79,C8,C87,D1,D10,D11,D2,D5,D9
lof_cds	Chr2	29879335	C	CGA	INDEL	2bp_insertion	frameshift_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	1	B113
typical_cds_rare	Chr2	29879335	C	CGA	INDEL	2bp_insertion	CDS_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	1	B113
lof_cds	Chr2	29879346	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	208	A1,A10,A11,A13,A14,A16,A19,A20,A22,A24,A25,A3,A4,A5,A6,A7,A8,B1,B10,B100,B101,B102,B103,B104,B105,B108,B109,B11,B111,B112,B114,B115,B117,B118,B119,B12,B120,B121,B123,B124,B125,B127,B129,B13,B131,B132,B133,B134,B136,B137,B138,B139,B14,B15,B17,B2,B20,B21,B23,B24,B25,B26,B27,B28,B29,B3,B32,B33,B34,B35,B37,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B5,B50,B51,B52,B53,B54,B55,B56,B57,B6,B60,B61,B62,B63,B64,B66,B67,B68,B69,B7,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B82,B83,B84,B86,B87,B88,B9,B90,B92,B94,B95,B96,B97,B98,B99,C1,C10,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C35,C36,C37,C38,C39,C4,C42,C43,C45,C47,C48,C49,C5,C50,C51,C53,C54,C55,C56,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C7,C70,C71,C72,C74,C75,C76,C77,C79,C8,C81,C82,C83,C85,C87,C9,D1,D10,D2,D3,D4,D5,D6,D7,D8
typical_cds_rare	Chr2	29879365	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	1	C49
typical_cds_rare	Chr2	29879373	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	2	B71,C6
typical_cds_rare	Chr2	29879385	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	1	A3
typical_cds_rare	Chr2	29879387	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	1	B6
typical_cds_rare	Chr2	29879388	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	3	B3,C22,C77
typical_cds_rare	Chr2	29879401	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	1	B75
lof_cds	Chr2	29879411	CCG	C	INDEL	2bp_deletion	frameshift_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	4	B135,B59,B98,C42
typical_cds_rare	Chr2	29879411	CCG	C	INDEL	2bp_deletion	CDS_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	4	B135,B59,B98,C42
typical_cds_rare	Chr2	29879413	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	4	B108,B91,D10,D11
typical_cds_rare	Chr2	29879423	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	1	B104
typical_cds_rare	Chr2	29879444	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	2	B129,B91
lof_cds	Chr2	29879445	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	105	A1,A10,A13,A16,A19,A20,A22,A24,A3,A4,A5,A6,B1,B101,B103,B104,B114,B120,B121,B123,B128,B13,B133,B136,B137,B138,B140,B15,B17,B20,B24,B26,B27,B30,B32,B35,B40,B43,B44,B47,B48,B50,B52,B56,B66,B67,B69,B7,B71,B73,B74,B78,B8,B81,B83,B85,B86,B88,B89,B92,B97,B98,C1,C10,C13,C14,C15,C16,C18,C23,C25,C26,C27,C28,C29,C3,C32,C36,C37,C38,C39,C4,C43,C45,C49,C50,C51,C54,C55,C56,C59,C61,C63,C64,C68,C7,C74,C75,C77,C79,C82,C87,C9,D10,D3
lof_cds	Chr2	29879446	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	120	A1,A10,A13,A16,A19,A20,A22,A24,A3,A4,A5,A6,A9,B1,B101,B103,B104,B114,B12,B120,B121,B123,B128,B13,B133,B134,B136,B137,B138,B14,B140,B15,B17,B20,B24,B26,B27,B30,B32,B35,B4,B40,B43,B44,B47,B48,B50,B52,B56,B63,B66,B67,B69,B7,B71,B73,B74,B77,B78,B8,B81,B83,B85,B86,B88,B89,B92,B97,B98,C1,C10,C13,C14,C15,C16,C17,C18,C22,C23,C24,C25,C26,C27,C28,C29,C3,C32,C33,C36,C37,C38,C39,C4,C43,C45,C49,C5,C50,C51,C54,C55,C56,C59,C61,C63,C64,C68,C7,C72,C74,C75,C77,C79,C82,C87,C9,D10,D2,D3,D4
lof_cds	Chr2	29879449	TGC	T	INDEL	2bp_deletion	frameshift_variant	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	115	A1,A10,A13,A16,A19,A20,A22,A24,A3,A4,A5,A6,A9,B1,B101,B103,B104,B114,B12,B120,B121,B123,B128,B13,B133,B134,B136,B137,B138,B14,B140,B15,B17,B20,B24,B26,B27,B30,B32,B35,B4,B40,B43,B44,B48,B50,B52,B56,B63,B66,B67,B69,B7,B73,B74,B77,B78,B8,B81,B83,B85,B86,B89,B97,B98,C1,C10,C14,C15,C16,C17,C18,C22,C23,C24,C25,C26,C27,C28,C29,C3,C32,C33,C36,C37,C38,C39,C4,C43,C45,C49,C5,C50,C51,C54,C55,C56,C59,C61,C63,C64,C68,C7,C72,C74,C75,C77,C79,C82,C87,C9,D10,D2,D3,D4
lof_cds	Chr2	29879515	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131008262	SmilChr02G001604	131008262	rna-XM_057935151.1	57	A1,A10,A13,A14,A20,A4,A5,A6,A9,B101,B104,B114,B130,B133,B134,B140,B15,B17,B24,B34,B35,B4,B42,B43,B48,B50,B56,B63,B66,B72,B73,B74,B78,B80,C1,C10,C14,C15,C17,C18,C23,C24,C25,C29,C3,C36,C37,C38,C4,C43,C49,C50,C51,C54,C61,C68,C74