source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr2	48291020	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	D11
typical_cds_rare	Chr2	48291031	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	5	B69,C31,C41,C77,C82
typical_cds_rare	Chr2	48291032	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	2	B133,C7
typical_cds_rare	Chr2	48291034	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	2	B104,C28
typical_cds_rare	Chr2	48291037	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	2	B106,B55
lof_cds	Chr2	48291047	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	6	B104,B106,B139,B55,C20,C28
typical_cds_rare	Chr2	48291051	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	4	A19,B106,C41,C9
typical_cds_rare	Chr2	48291071	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	2	B80,D5
typical_cds_rare	Chr2	48291073	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	B97
lof_cds	Chr2	48291095	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	78	A11,A18,A21,A3,A6,A8,B10,B104,B109,B112,B113,B120,B122,B125,B127,B129,B130,B131,B135,B138,B14,B15,B22,B24,B28,B30,B31,B35,B36,B37,B38,B39,B47,B56,B66,B69,B70,B72,B73,B75,B78,B82,B88,B9,B92,B94,B96,B97,C1,C17,C21,C22,C23,C26,C29,C3,C30,C32,C36,C38,C39,C44,C46,C47,C50,C54,C56,C6,C61,C68,C79,C8,C84,C87,C9,D1,D11,D4
lof_cds	Chr2	48291096	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	14	A13,A8,B106,B13,B44,B54,B81,B90,B92,B94,B97,C24,C54,C67
typical_cds_rare	Chr2	48291099	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	3	B108,C15,D5
lof_cds	Chr2	48291101	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	8	B117,B120,B121,B133,B44,B76,C7,D2
lof_cds	Chr2	48291102	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	13	A15,A3,B122,B123,B16,B24,B32,B35,B37,C25,C63,C86,C9
typical_cds_rare	Chr2	48291123	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	2	A5,D11
typical_cds_rare	Chr2	48291132	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	3	B28,B30,C10
lof_cds	Chr2	48291152	ACC	A	INDEL	2bp_deletion	frameshift_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	53	A23,A3,A7,B100,B109,B11,B111,B120,B121,B123,B13,B130,B137,B15,B2,B25,B27,B31,B40,B41,B42,B43,B45,B50,B54,B56,B69,B71,B74,B76,B77,B8,B9,B95,B96,B98,C17,C18,C2,C30,C32,C35,C4,C40,C47,C62,C68,C70,C72,C80,C81,C86,D1
lof_cds	Chr2	48291156	TCG	T	INDEL	2bp_deletion	frameshift_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	54	A23,A3,A7,B100,B109,B11,B111,B120,B121,B123,B13,B130,B137,B15,B2,B25,B27,B31,B40,B41,B42,B43,B45,B50,B54,B56,B69,B71,B74,B76,B77,B8,B9,B95,B96,B98,C17,C18,C2,C30,C32,C35,C4,C40,C47,C62,C68,C70,C71,C72,C80,C81,C86,D1
typical_cds_rare	Chr2	48291162	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	A5
typical_cds_rare	Chr2	48291185	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	3	A10,B66,C31
lof_cds	Chr2	48291207	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	48	A1,A13,A22,A25,A9,B1,B105,B109,B110,B111,B131,B16,B17,B22,B23,B3,B31,B34,B40,B44,B55,B58,B59,B67,B7,B8,B86,B99,C16,C19,C20,C22,C31,C36,C41,C49,C5,C51,C60,C66,C7,C70,C77,C79,C82,D10,D4,D6
typical_cds_rare	Chr2	48291215	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	C58
typical_cds_rare	Chr2	48291240	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	3	C13,C78,C83
typical_cds_rare	Chr2	48291241	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	5	B14,B73,C19,C69,C84
typical_cds_rare	Chr2	48291257	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	3	B115,B53,C45
typical_cds_rare	Chr2	48291300	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	4	B11,B13,B7,B86
lof_cds	Chr2	48291319	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	11	A13,A8,B106,B22,B44,B54,B90,B94,C24,C54,C67
typical_cds_rare	Chr2	48291340	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	5	B120,B133,B26,C3,C7
typical_cds_rare	Chr2	48291342	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	3	C13,C78,C83
typical_cds_rare	Chr2	48291356	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	2	C63,D3
typical_cds_rare	Chr2	48291362	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	4	A14,B86,C23,C64
typical_cds_rare	Chr2	48291365	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	5	A6,B7,C20,C58,C7
typical_cds_rare	Chr2	48291379	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	B34
typical_cds_rare	Chr2	48291380	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	3	B100,C3,D11
typical_cds_rare	Chr2	48291396	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	5	B120,B133,B26,C3,C7
typical_cds_rare	Chr2	48291404	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	2	B97,C9
lof_cds	Chr2	48291406	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	B71
typical_cds_rare	Chr2	48291406	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	B71
typical_cds_rare	Chr2	48291415	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	2	B46,C46
lof_cds	Chr2	48291417	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	B66
typical_cds_rare	Chr2	48291417	G	GT	INDEL	1bp_insertion	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	B66
typical_cds_rare	Chr2	48291426	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	4	A2,B55,B66,C35
typical_cds_rare	Chr2	48291440	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	C23
typical_cds_rare	Chr2	48291442	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	C43
typical_cds_rare	Chr2	48291452	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	4	B36,B48,B71,C37
typical_cds_rare	Chr2	48291473	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	4	B104,B54,B87,D9
typical_cds_rare	Chr2	48291475	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	C28
typical_cds_rare	Chr2	48291486	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	D11
typical_cds_rare	Chr2	48291516	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	B13
lof_cds	Chr2	48291521	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	8	A11,A3,B69,B70,B72,B95,C26,C46
typical_cds_rare	Chr2	48291579	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	3	B104,B112,B84
typical_cds_rare	Chr2	48291584	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	2	C63,D3
typical_cds_rare	Chr2	48291609	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	B78
typical_cds_rare	Chr2	48291630	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	B64
typical_cds_rare	Chr2	48291669	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	C60
lof_cds	Chr2	48291686	CGA	C	INDEL	2bp_deletion	frameshift_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	14	A18,B117,B121,B131,B30,B42,B43,B74,B84,C24,C38,C60,C76,D8
lof_cds	Chr2	48291704	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	99	A10,A11,A18,A2,A24,A6,A8,B1,B10,B102,B105,B108,B111,B112,B118,B119,B12,B120,B123,B128,B13,B134,B137,B139,B19,B21,B24,B25,B26,B29,B30,B31,B35,B41,B47,B5,B50,B53,B55,B56,B57,B60,B62,B64,B65,B68,B69,B71,B75,B83,B84,B86,B91,B98,C1,C10,C11,C13,C14,C16,C18,C19,C23,C26,C28,C30,C32,C35,C38,C39,C41,C43,C45,C46,C48,C49,C52,C59,C61,C64,C65,C66,C67,C68,C69,C7,C75,C79,C80,C82,C84,C9,D10,D2,D4,D5,D6,D7,D9
lof_cds	Chr2	48291705	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	157	A1,A15,A16,A18,A19,A20,A22,A23,A25,A3,A4,A5,A7,A9,B10,B100,B101,B102,B103,B104,B105,B109,B11,B110,B113,B114,B115,B117,B118,B12,B120,B121,B122,B124,B125,B126,B127,B131,B133,B134,B135,B136,B137,B138,B140,B16,B17,B18,B2,B20,B24,B27,B28,B31,B32,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B48,B49,B51,B54,B58,B59,B61,B64,B66,B68,B70,B72,B74,B75,B76,B77,B8,B80,B81,B82,B85,B88,B9,B90,B91,B93,B94,B96,B99,C1,C12,C15,C17,C20,C21,C22,C24,C25,C26,C27,C29,C3,C30,C32,C33,C34,C37,C4,C40,C42,C44,C5,C50,C51,C53,C54,C55,C56,C57,C58,C59,C60,C62,C63,C67,C68,C7,C70,C71,C72,C73,C74,C75,C76,C78,C79,C8,C80,C81,C83,C84,C86,C87,D10,D11,D3,D4,D8
lof_cds	Chr2	48291706	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	B66
typical_cds_rare	Chr2	48291706	C	CA	INDEL	1bp_insertion	CDS_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	1	B66
lof_cds	Chr2	48291707	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	12	A19,B108,B140,B33,B72,C2,C23,C64,C66,C79,C8,C84
lof_cds	Chr2	48291708	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	14	A20,B103,B117,B124,B20,B33,B41,B57,B66,B79,B89,C21,C38,C60
lof_cds	Chr2	48291721	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009642	SmilChr02G002820	131009642	rna-XM_057937055.1	20	A20,B103,B117,B121,B124,B133,B20,B26,B33,B41,B57,B66,B79,B82,B89,C21,C3,C38,C60,C7