source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr2	53642968	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	B35
typical_cds_rare	Chr2	53642968	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	B35
typical_cds_rare	Chr2	53642969	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	A5,B48
typical_cds_rare	Chr2	53642985	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B140,B35
typical_cds_rare	Chr2	53642988	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	B75
lof_cds	Chr2	53643035	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B1,B2
typical_cds_rare	Chr2	53643035	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B1,B2
lof_cds	Chr2	53643038	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B1,B2
typical_cds_rare	Chr2	53643038	A	AC	INDEL	1bp_insertion	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B1,B2
typical_cds_rare	Chr2	53643048	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	3	B59,B76,C37
typical_cds_rare	Chr2	53643079	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	5	B87,C37,C55,C59,D8
typical_cds_rare	Chr2	53643091	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	C32,C68
typical_cds_rare	Chr2	53643092	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	4	B87,B96,C55,D8
typical_cds_rare	Chr2	53643093	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B35,C36
typical_cds_rare	Chr2	53643096	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	A1,C2
lof_cds	Chr2	53643101	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	33	A21,A24,A5,A6,B101,B122,B135,B136,B15,B26,B33,B37,B47,B60,B74,B85,B88,B89,B93,B96,C10,C16,C28,C33,C37,C42,C69,C70,C73,C86,D11,D3,D8
typical_cds_rare	Chr2	53643120	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	5	A2,B105,C43,C61,C87
typical_cds_rare	Chr2	53643122	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	4	B104,B52,B70,B71
lof_cds	Chr2	53643126	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	A1,C2
typical_cds_rare	Chr2	53643126	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	A1,C2
lof_cds	Chr2	53643148	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	6	B112,B117,B13,B136,B44,C55
lof_cds	Chr2	53643156	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	4	A10,B100,C21,C59
typical_cds_rare	Chr2	53643156	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	4	A10,B100,C21,C59
typical_cds_rare	Chr2	53643186	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	A5,B48
typical_cds_rare	Chr2	53643211	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	B84
typical_cds_rare	Chr2	53643225	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	5	A2,B105,C43,C61,C87
lof_cds	Chr2	53643226	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B1,B2
typical_cds_rare	Chr2	53643226	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B1,B2
typical_cds_rare	Chr2	53643241	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	B108
typical_cds_rare	Chr2	53643261	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	B84
lof_cds	Chr2	53643290	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	C71
typical_cds_rare	Chr2	53643290	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	C71
lof_cds	Chr2	53643291	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	B30
typical_cds_rare	Chr2	53643291	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	B30
typical_cds_rare	Chr2	53643305	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	3	B125,B92,C87
lof_cds	Chr2	53643339	TCG	T	INDEL	2bp_deletion	frameshift_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B16,B79
typical_cds_rare	Chr2	53643339	TCG	T	INDEL	2bp_deletion	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B16,B79
typical_cds_rare	Chr2	53643472	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	B97
typical_cds_rare	Chr2	53643476	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	B97
typical_cds_rare	Chr2	53643482	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	3	B41,C10,C42
typical_cds_rare	Chr2	53643523	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	C71
typical_cds_rare	Chr2	53643532	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	B2
lof_cds	Chr2	53643539	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B58,C70
typical_cds_rare	Chr2	53643539	GC	G	INDEL	1bp_deletion	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B58,C70
typical_cds_rare	Chr2	53643541	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	B35
typical_cds_rare	Chr2	53643548	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	C87
typical_cds_rare	Chr2	53643557	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	3	B2,C33,C46
typical_cds_rare	Chr2	53643564	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	C32,C68
typical_cds_rare	Chr2	53643597	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B90,C31
lof_cds	Chr2	53643604	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	32	A10,A14,A21,A22,A3,A9,B103,B113,B120,B133,B136,B137,B138,B28,B4,B43,B47,B50,B76,B81,B85,B86,C11,C16,C44,C45,C51,C52,C6,C69,C71,C74
typical_cds_rare	Chr2	53643619	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	3	B2,B90,C31
typical_cds_rare	Chr2	53643635	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	3	B140,B2,B59
typical_cds_rare	Chr2	53643636	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	C13
typical_cds_rare	Chr2	53643653	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	4	B2,B60,C13,C17
typical_cds_rare	Chr2	53643663	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	B137
typical_cds_rare	Chr2	53643821	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	4	B52,B70,B71,C62
typical_cds_rare	Chr2	53643854	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	5	B72,C11,C13,C26,C69
typical_cds_rare	Chr2	53643855	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B26,C77
typical_cds_rare	Chr2	53643865	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	C54
typical_cds_rare	Chr2	53643879	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	5	A24,A5,B26,B80,C77
typical_cds_rare	Chr2	53643882	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	3	A20,B122,B51
typical_cds_rare	Chr2	53643889	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B13,C54
typical_cds_rare	Chr2	53643891	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	C59,C85
typical_cds_rare	Chr2	53643915	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	B41
typical_cds_rare	Chr2	53643941	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B1,B26
lof_cds	Chr2	53643967	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	119	A1,A10,A2,A20,A24,A5,A9,B1,B101,B102,B103,B104,B105,B107,B113,B114,B117,B119,B12,B121,B122,B125,B131,B133,B135,B136,B15,B16,B18,B2,B20,B22,B26,B30,B33,B34,B37,B4,B40,B45,B46,B47,B48,B53,B56,B58,B6,B60,B61,B65,B69,B7,B70,B74,B75,B76,B77,B82,B84,B85,B88,B89,B90,B92,B93,B96,B97,C10,C11,C13,C15,C16,C18,C19,C2,C20,C22,C28,C31,C32,C33,C34,C35,C37,C38,C40,C42,C43,C44,C45,C48,C54,C56,C58,C60,C62,C63,C64,C66,C67,C68,C69,C70,C71,C73,C74,C78,C79,C8,C80,C81,C84,C86,C87,C9,D1,D4,D5,D7
lof_cds	Chr2	53643985	T	TAG	INDEL	2bp_insertion	frameshift_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	3	B5,C56,C65
typical_cds_rare	Chr2	53643985	T	TAG	INDEL	2bp_insertion	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	3	B5,C56,C65
typical_cds_rare	Chr2	53643992	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B73,C23
typical_cds_rare	Chr2	53644000	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B60,C13
typical_cds_rare	Chr2	53644004	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	A24,C45
typical_cds_rare	Chr2	53644012	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	C33,C46
typical_cds_rare	Chr2	53644040	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	3	B122,C16,C62
typical_cds_rare	Chr2	53644042	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	4	B130,B32,C23,C49
lof_cds	Chr2	53644044	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	89	A14,A16,A2,A22,A3,A4,A7,A9,B1,B102,B105,B106,B109,B11,B112,B115,B119,B120,B127,B131,B138,B140,B18,B2,B21,B22,B25,B26,B29,B31,B33,B35,B36,B38,B39,B4,B40,B42,B43,B45,B46,B54,B57,B58,B59,B65,B70,B71,B78,B84,B85,B86,B9,C14,C16,C17,C20,C22,C24,C26,C30,C31,C35,C37,C46,C47,C48,C5,C50,C54,C57,C59,C61,C62,C65,C71,C74,C76,C77,C78,C80,C82,C84,C85,D1,D11,D2,D3,D5
typical_cds_rare	Chr2	53644048	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	5	B140,B59,B60,C17,C37
lof_cds	Chr2	53644077	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	7	B117,B22,B40,B70,C65,C84,D1
typical_cds_rare	Chr2	53644109	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	3	B122,C16,C62
typical_cds_rare	Chr2	53644135	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	A3
typical_cds_rare	Chr2	53644140	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	3	B125,B90,B92
typical_cds_rare	Chr2	53644142	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	4	B36,B47,B74,C73
lof_cds	Chr2	53644153	CCT	C	INDEL	2bp_deletion	frameshift_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B1,B2
typical_cds_rare	Chr2	53644153	CCT	C	INDEL	2bp_deletion	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B1,B2
lof_cds	Chr2	53644157	T	TTA	INDEL	2bp_insertion	frameshift_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B1,B2
typical_cds_rare	Chr2	53644157	T	TTA	INDEL	2bp_insertion	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B1,B2
typical_cds_rare	Chr2	53644171	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B66,B8
typical_cds_rare	Chr2	53644191	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	3	B128,B38,C43
lof_cds	Chr2	53644202	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	32	A10,A3,A9,B1,B113,B119,B16,B22,B30,B47,B48,B56,B7,B75,B77,B79,B96,C11,C13,C15,C2,C35,C40,C60,C63,C64,C66,C68,C69,C81,D1,D3
lof_cds	Chr2	53644215	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	B129
typical_cds_rare	Chr2	53644215	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	1	B129
typical_cds_rare	Chr2	53644254	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	2	B67,C21
lof_cds	Chr2	53644272	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	6	B104,B52,B70,B71,B84,C62
typical_cds_rare	Chr2	53644323	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131010223	SmilChr02G003237	131010223	rna-XM_057937646.1	5	B112,B117,B136,B44,C55