source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr2	54072686	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	B104
typical_cds_rare	Chr2	54072694	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	B109
typical_cds_rare	Chr2	54072699	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	5	A16,B54,C15,C26,C44
typical_cds_rare	Chr2	54072722	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	D10
typical_cds_rare	Chr2	54072750	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	5	A21,B94,C77,D4,D5
lof_cds	Chr2	54072819	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	2	B35,C49
typical_cds_rare	Chr2	54072819	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	2	B35,C49
typical_cds_rare	Chr2	54072963	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	D3
typical_cds_rare	Chr2	54072967	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	B112
typical_cds_rare	Chr2	54072973	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	2	C42,D10
typical_cds_rare	Chr2	54072985	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	2	B109,D6
typical_cds_rare	Chr2	54073008	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	B109
typical_cds_rare	Chr2	54073021	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	C53
typical_cds_rare	Chr2	54073026	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	D10
typical_cds_rare	Chr2	54073033	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	2	B57,C49
typical_cds_rare	Chr2	54073035	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	3	B109,B48,B89
typical_cds_rare	Chr2	54073037	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	B24
typical_cds_rare	Chr2	54073084	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	4	A7,B35,B58,C49
typical_cds_rare	Chr2	54073107	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	D3
typical_cds_rare	Chr2	54073112	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	B109
typical_cds_rare	Chr2	54073121	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	B109
lof_cds	Chr2	54073130	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	8	B104,B118,B126,B34,B61,B94,C17,C21
lof_cds	Chr2	54073145	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	4	B13,C53,C58,C69
typical_cds_rare	Chr2	54073145	CG	C	INDEL	1bp_deletion	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	4	B13,C53,C58,C69
lof_cds	Chr2	54073149	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	23	A18,B11,B14,B17,B18,B20,B22,B26,B36,B42,B54,B58,B67,B74,B89,B95,C3,C35,C36,C46,C51,C79,C83
lof_cds	Chr2	54073152	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	19	A18,B11,B17,B20,B22,B26,B36,B42,B54,B67,B74,B89,B95,C3,C35,C36,C46,C51,C83
lof_cds	Chr2	54073154	T	TGG	INDEL	2bp_insertion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	19	A18,B11,B17,B20,B22,B26,B36,B42,B54,B67,B74,B89,B95,C3,C35,C36,C46,C51,C83
lof_cds	Chr2	54073165	CGG	C	INDEL	2bp_deletion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	17	A18,B11,B17,B20,B22,B26,B36,B42,B54,B67,B74,B89,B95,C35,C36,C46,C83
lof_cds	Chr2	54073184	C	CAA	INDEL	2bp_insertion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	A7
typical_cds_rare	Chr2	54073184	C	CAA	INDEL	2bp_insertion	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	A7
typical_cds_rare	Chr2	54073194	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	B7
typical_cds_rare	Chr2	54073206	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	4	B134,C22,C53,C64
typical_cds_rare	Chr2	54073214	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	B93
typical_cds_rare	Chr2	54073218	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	4	B89,C35,C51,C64
typical_cds_rare	Chr2	54073228	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	4	B134,C22,C53,C64
typical_cds_rare	Chr2	54073243	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	5	B134,C22,C53,C64,D9
typical_cds_rare	Chr2	54073249	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	3	B134,C22,C53
lof_cds	Chr2	54073286	A	ATC	INDEL	2bp_insertion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	C76
typical_cds_rare	Chr2	54073286	A	ATC	INDEL	2bp_insertion	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	C76
typical_cds_rare	Chr2	54073297	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	2	B11,C55
typical_cds_rare	Chr2	54073313	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	4	B139,B4,B97,C4
lof_cds	Chr2	54073316	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	7	A14,A19,A9,B73,B88,C27,C86
typical_cds_rare	Chr2	54073331	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	D3
lof_cds	Chr2	54073360	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	19	A5,B118,B137,B21,B37,B68,B72,B73,B80,C2,C20,C27,C31,C40,C55,C79,C80,C84,D6
typical_cds_rare	Chr2	54073408	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	B46
lof_cds	Chr2	54073435	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	B13
typical_cds_rare	Chr2	54073435	GT	G	INDEL	1bp_deletion	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	B13
typical_cds_rare	Chr2	54073442	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	D8
typical_cds_rare	Chr2	54073444	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	B41
lof_cds	Chr2	54073461	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	31	A16,A9,B10,B100,B105,B18,B28,B42,B43,B48,B54,B63,B70,B8,B84,B89,B99,C10,C15,C20,C26,C44,C51,C61,C63,C7,C70,C75,D1,D2,D4
lof_cds	Chr2	54073473	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	A19
typical_cds_rare	Chr2	54073473	G	GC	INDEL	1bp_insertion	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	A19
typical_cds_rare	Chr2	54073476	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	5	A19,A3,B35,B58,C49
lof_cds	Chr2	54073477	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	2	A19,A3
typical_cds_rare	Chr2	54073477	A	AC	INDEL	1bp_insertion	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	2	A19,A3
lof_cds	Chr2	54073480	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	2	A19,A3
typical_cds_rare	Chr2	54073480	CT	C	INDEL	1bp_deletion	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	2	A19,A3
lof_cds	Chr2	54073482	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	2	A19,A3
typical_cds_rare	Chr2	54073482	CT	C	INDEL	1bp_deletion	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	2	A19,A3
typical_cds_rare	Chr2	54073510	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	5	A10,B136,B66,C10,C55
typical_cds_rare	Chr2	54073513	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	3	A19,A3,B13
typical_cds_rare	Chr2	54073519	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	3	A19,A3,B13
lof_cds	Chr2	54073524	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	3	A19,A3,B13
typical_cds_rare	Chr2	54073524	G	GC	INDEL	1bp_insertion	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	3	A19,A3,B13
lof_cds	Chr2	54073527	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	3	A19,A3,B13
typical_cds_rare	Chr2	54073527	GC	G	INDEL	1bp_deletion	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	3	A19,A3,B13
lof_cds	Chr2	54073574	CGT	C	INDEL	2bp_deletion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	2	A3,C43
typical_cds_rare	Chr2	54073574	CGT	C	INDEL	2bp_deletion	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	2	A3,C43
typical_cds_rare	Chr2	54073581	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	2	A3,C43
typical_cds_rare	Chr2	54073585	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	2	A3,C43
typical_cds_rare	Chr2	54073588	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	3	A3,C43,C62
typical_cds_rare	Chr2	54073613	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	1	C53
typical_cds_rare	Chr2	54073679	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	3	B120,B20,B55
lof_cds	Chr2	54073799	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	3	B16,C34,C84
typical_cds_rare	Chr2	54073799	G	GA	INDEL	1bp_insertion	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	3	B16,C34,C84
lof_cds	Chr2	54073803	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	3	B16,C34,C84
typical_cds_rare	Chr2	54073803	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131009743	SmilChr02G003278	131009743	rna-XM_057937152.1	3	B16,C34,C84