source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr2	54110061	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	B103,B21
typical_cds_rare	Chr2	54110061	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	B103,B21
typical_cds_rare	Chr2	54110087	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	B129,B58
typical_cds_rare	Chr2	54110131	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	B140,C13
typical_cds_rare	Chr2	54110132	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	B65
lof_cds	Chr2	54110206	TCA	T	INDEL	2bp_deletion	frameshift_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	7	B13,B131,B75,C13,C29,C35,C64
lof_cds	Chr2	54110214	C	CTA	INDEL	2bp_insertion	frameshift_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	6	B13,B131,B75,C13,C29,C35
typical_cds_rare	Chr2	54110228	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	B75,C29
typical_cds_rare	Chr2	54110264	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	5	B25,C14,C32,C45,C68
typical_cds_rare	Chr2	54110269	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	B31
lof_cds	Chr2	54110338	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	C71,D10
typical_cds_rare	Chr2	54110338	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	C71,D10
typical_cds_rare	Chr2	54110369	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	C8
lof_cds	Chr2	54110407	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	80	A1,A13,A22,A6,B101,B106,B108,B111,B112,B113,B125,B128,B134,B137,B139,B14,B15,B16,B17,B18,B21,B22,B24,B26,B36,B42,B43,B5,B56,B57,B58,B6,B61,B62,B67,B69,B72,B78,B79,B83,B9,B94,B96,B99,C10,C12,C14,C15,C16,C20,C22,C23,C25,C28,C32,C34,C37,C38,C39,C4,C40,C43,C49,C52,C56,C59,C6,C63,C64,C66,C67,C68,C71,C74,C77,C84,C85,D3,D5,D7
lof_cds	Chr2	54110411	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	80	A1,A13,A22,A6,B101,B106,B108,B111,B112,B113,B125,B128,B134,B137,B139,B14,B15,B16,B17,B18,B21,B22,B24,B26,B36,B42,B43,B5,B56,B57,B58,B6,B61,B62,B67,B69,B72,B78,B79,B83,B9,B94,B96,B99,C10,C12,C14,C15,C16,C20,C22,C23,C25,C28,C32,C34,C37,C38,C39,C4,C40,C43,C49,C52,C56,C59,C6,C63,C64,C66,C67,C68,C71,C74,C77,C84,C85,D3,D5,D7
typical_cds_rare	Chr2	54110563	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	B65
typical_cds_rare	Chr2	54110584	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	C71,D10
typical_cds_rare	Chr2	54110610	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	C64
typical_cds_rare	Chr2	54110700	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	C30,C49
typical_cds_rare	Chr2	54110708	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	A6,C20
typical_cds_rare	Chr2	54110726	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	B21
typical_cds_rare	Chr2	54110768	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	5	B28,B55,B56,B95,C29
lof_cds	Chr2	54110770	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	5	B28,B55,B56,B95,C29
typical_cds_rare	Chr2	54110770	A	ACC	INDEL	2bp_insertion	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	5	B28,B55,B56,B95,C29
lof_cds	Chr2	54110771	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	5	B28,B55,B56,B95,C29
typical_cds_rare	Chr2	54110771	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	5	B28,B55,B56,B95,C29
typical_cds_rare	Chr2	54110824	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	B84,C71,D10
typical_cds_rare	Chr2	54110835	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	4	B28,B56,C29,C41
typical_cds_rare	Chr2	54110878	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	B140
typical_cds_rare	Chr2	54110879	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	4	A1,A2,B29,B77
lof_cds	Chr2	54110914	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	A1,A15,B29
typical_cds_rare	Chr2	54110914	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	A1,A15,B29
lof_cds	Chr2	54110917	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	A1,A15,B29
typical_cds_rare	Chr2	54110917	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	A1,A15,B29
lof_cds	Chr2	54110941	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	A1,A15,B29
typical_cds_rare	Chr2	54110941	TCC	T	INDEL	2bp_deletion	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	A1,A15,B29
lof_cds	Chr2	54110945	T	TTG	INDEL	2bp_insertion	stop_gained,frameshift_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	A1,A15,B29
typical_cds_rare	Chr2	54110945	T	TTG	INDEL	2bp_insertion	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	A1,A15,B29
typical_cds_rare	Chr2	54110954	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	A1,A15,B29
lof_cds	Chr2	54110973	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	A1,A15,B29
typical_cds_rare	Chr2	54110973	G	GA	INDEL	1bp_insertion	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	A1,A15,B29
typical_cds_rare	Chr2	54110979	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	A1,A15,B29
lof_cds	Chr2	54110992	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	27	A16,A22,A5,B105,B117,B122,B130,B35,B44,B48,B55,B71,B75,B76,B84,B88,B91,C49,C53,C60,C66,C69,C71,C78,D11,D2,D5
typical_cds_rare	Chr2	54111004	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	B30,B57
typical_cds_rare	Chr2	54111014	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	B69
lof_cds	Chr2	54111027	CGA	C	INDEL	2bp_deletion	frameshift_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	A15,C77
typical_cds_rare	Chr2	54111027	CGA	C	INDEL	2bp_deletion	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	A15,C77
typical_cds_rare	Chr2	54111038	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	5	B21,B32,B34,B87,C19
typical_cds_rare	Chr2	54111043	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	A15,C77
typical_cds_rare	Chr2	54111070	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	B88
typical_cds_rare	Chr2	54111131	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	B1,C17
typical_cds_rare	Chr2	54111142	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	4	B59,C77,D2,D4
typical_cds_rare	Chr2	54111175	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	B10,B80
typical_cds_rare	Chr2	54111196	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	B84,C71
typical_cds_rare	Chr2	54111215	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	A19,B1
typical_cds_rare	Chr2	54111235	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	B118
typical_cds_rare	Chr2	54111240	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	A6,B108,C43
lof_cds	Chr2	54111245	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	B112,C28
typical_cds_rare	Chr2	54111245	C	CA	INDEL	1bp_insertion	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	B112,C28
typical_cds_rare	Chr2	54111250	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	B108
typical_cds_rare	Chr2	54111252	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	B132,B28,B68
typical_cds_rare	Chr2	54111276	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	B84,C71,D10
typical_cds_rare	Chr2	54111289	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	C66
typical_cds_rare	Chr2	54111294	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	5	B115,B20,C62,C80,D8
typical_cds_rare	Chr2	54111312	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	B104
typical_cds_rare	Chr2	54111338	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	B65
typical_cds_rare	Chr2	54111362	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	5	A6,B108,B111,C20,C43
typical_cds_rare	Chr2	54111366	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	A19,B1
typical_cds_rare	Chr2	54111403	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	B22
lof_cds	Chr2	54111408	G	GAA	INDEL	2bp_insertion	frameshift_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	C30,C49
typical_cds_rare	Chr2	54111408	G	GAA	INDEL	2bp_insertion	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	C30,C49
typical_cds_rare	Chr2	54111413	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	B84,C71,D10
typical_cds_rare	Chr2	54111512	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	B104,D11
lof_cds	Chr2	54111518	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	4	B120,C14,C87,D6
typical_cds_rare	Chr2	54111518	GC	G	INDEL	1bp_deletion	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	4	B120,C14,C87,D6
typical_cds_rare	Chr2	54111529	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	3	B84,C71,D10
typical_cds_rare	Chr2	54111557	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	A16
typical_cds_rare	Chr2	54111558	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	4	A6,B108,C20,C43
typical_cds_rare	Chr2	54111559	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	5	B125,B21,B52,B7,C55
lof_cds	Chr2	54111591	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	B10,B80
typical_cds_rare	Chr2	54111591	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	B10,B80
lof_cds	Chr2	54111595	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	B10,B80
typical_cds_rare	Chr2	54111595	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	B10,B80
typical_cds_rare	Chr2	54111619	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	5	B25,B63,B79,B86,C16
typical_cds_rare	Chr2	54111651	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	5	B115,B20,C62,C80,D8
typical_cds_rare	Chr2	54111674	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	D10
typical_cds_rare	Chr2	54111677	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	D10
typical_cds_rare	Chr2	54111724	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	2	C30,C49
typical_cds_rare	Chr2	54111733	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009745	SmilChr02G003280	131009745	rna-XM_057937154.1	1	C28