source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr2	75392393	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B17,C13,C20
typical_cds_rare	Chr2	75392393	C	CA	INDEL	1bp_insertion	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B17,C13,C20
typical_cds_rare	Chr2	75392408	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	2	C13,C20
typical_cds_rare	Chr2	75392421	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1	1	B4
lof_cds	Chr2	75392423	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1	1	B93
typical_cds_rare	Chr2	75392423	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1	1	B93
lof_cds	Chr2	75392508	C	CTT	INDEL	2bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	1	B88
typical_cds_rare	Chr2	75392508	C	CTT	INDEL	2bp_insertion	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	1	B88
lof_cds	Chr2	75392510	CCA	C	INDEL	2bp_deletion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	1	B88
typical_cds_rare	Chr2	75392510	CCA	C	INDEL	2bp_deletion	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	1	B88
lof_cds	Chr2	75392521	C	CGT	INDEL	2bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	4	B73,C13,C20,D10
typical_cds_rare	Chr2	75392521	C	CGT	INDEL	2bp_insertion	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	4	B73,C13,C20,D10
lof_cds	Chr2	75392546	G	GTT	INDEL	2bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	10	B105,B108,B136,B96,C2,C23,C70,C72,C73,C85
lof_cds	Chr2	75392547	CCG	C	INDEL	2bp_deletion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	10	B105,B108,B136,B96,C2,C23,C70,C72,C73,C85
typical_cds_rare	Chr2	75392580	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B112,B136,B19
typical_cds_rare	Chr2	75392589	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	2	B22,C82
lof_cds	Chr2	75392605	G	GGA	INDEL	2bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	57	A14,A15,A21,A3,A5,A7,A8,B104,B105,B110,B112,B117,B118,B121,B125,B128,B13,B132,B136,B137,B19,B29,B33,B4,B40,B41,B5,B50,B59,B6,B66,B7,B72,B77,B78,B88,B89,B98,C26,C29,C38,C4,C49,C5,C51,C52,C61,C62,C65,C67,C70,C76,C77,C78,C80,C86,D2
lof_cds	Chr2	75392607	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	69	A14,A15,A18,A21,A3,A5,A7,A8,B104,B105,B110,B112,B117,B118,B121,B125,B128,B13,B132,B136,B137,B16,B19,B29,B30,B33,B38,B39,B4,B40,B41,B5,B50,B59,B6,B60,B61,B66,B7,B72,B77,B78,B88,B89,B9,B98,C26,C29,C36,C38,C4,C49,C5,C51,C52,C53,C61,C62,C64,C65,C66,C67,C70,C76,C77,C78,C80,C86,D2
typical_cds_rare	Chr2	75392621	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	2	C59,D10
lof_cds	Chr2	75392630	TAG	T	INDEL	2bp_deletion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	67	A14,A15,A18,A21,A3,A7,B104,B108,B110,B117,B121,B125,B128,B13,B132,B136,B137,B16,B29,B30,B33,B39,B4,B41,B45,B5,B59,B6,B60,B61,B63,B66,B7,B72,B77,B78,B88,B89,B9,B98,C19,C23,C26,C29,C36,C4,C49,C5,C51,C52,C53,C61,C62,C64,C66,C67,C70,C72,C73,C74,C76,C77,C78,C80,C85,C86,D2
lof_cds	Chr2	75392641	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	61	A14,A15,A18,A21,A3,A7,B104,B108,B110,B117,B121,B125,B13,B136,B137,B16,B29,B30,B33,B4,B41,B45,B5,B59,B60,B66,B7,B72,B77,B78,B88,B89,B9,B98,C19,C23,C26,C29,C36,C4,C49,C5,C51,C52,C53,C61,C62,C64,C66,C67,C70,C72,C73,C74,C77,C78,C80,C85,C86,D10,D2
typical_cds_rare	Chr2	75392657	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B56,C16,C9
lof_cds	Chr2	75392669	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B18,B4,C67
typical_cds_rare	Chr2	75392669	C	CA	INDEL	1bp_insertion	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B18,B4,C67
typical_cds_rare	Chr2	75392688	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	1	B18
typical_cds_rare	Chr2	75392689	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	1	B110
lof_cds	Chr2	75392696	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	14	A14,B110,B117,B123,B125,B17,B19,B55,B56,B84,B89,C16,C43,C83
lof_cds	Chr2	75392702	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	13	A14,B110,B117,B123,B125,B17,B19,B55,B56,B84,C16,C43,C83
typical_cds_rare	Chr2	75392705	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	1	B18
typical_cds_rare	Chr2	75392713	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	2	B19,B56
typical_cds_rare	Chr2	75392729	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B125,B17,B84
lof_cds	Chr2	75392762	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	9	A1,B109,B128,B27,B59,C30,C57,C65,C87
typical_cds_rare	Chr2	75392864	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B50,C14,C42
typical_cds_rare	Chr2	75392948	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	1	D9
typical_cds_rare	Chr2	75392955	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	1	D9
typical_cds_rare	Chr2	75392986	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B50,C14,C42
typical_cds_rare	Chr2	75392991	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B50,C14,C42
typical_cds_rare	Chr2	75393001	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	2	C14,C42
typical_cds_rare	Chr2	75393017	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	2	C14,C42
lof_cds	Chr2	75393034	A	AAG	INDEL	2bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	20	A25,A6,B104,B17,B18,B2,B24,B47,B56,B96,B97,C11,C17,C2,C25,C65,C7,C84,C9,D11
lof_cds	Chr2	75393041	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	19	A25,A6,B104,B18,B2,B24,B47,B56,B84,B96,B97,C17,C2,C25,C65,C7,C84,C9,D11
lof_cds	Chr2	75393051	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	10	A25,B125,B18,B24,C11,C25,C7,C84,D10,D11
lof_cds	Chr2	75393055	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	12	A10,A6,A7,B101,B123,B17,B2,B47,B57,C17,C38,C47
lof_cds	Chr2	75393059	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	10	A10,A6,A7,B17,B2,B47,B57,C17,C38,C47
lof_cds	Chr2	75393061	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	19	A25,B104,B125,B17,B18,B24,B47,B56,B84,B96,C11,C17,C2,C25,C65,C7,C84,D10,D11
lof_cds	Chr2	75393064	A	AAG	INDEL	2bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	1	B101
typical_cds_rare	Chr2	75393064	A	AAG	INDEL	2bp_insertion	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	1	B101
lof_cds	Chr2	75393068	C	CTT	INDEL	2bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	4	A6,B118,C2,C38
typical_cds_rare	Chr2	75393068	C	CTT	INDEL	2bp_insertion	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	4	A6,B118,C2,C38
lof_cds	Chr2	75393070	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	1	C17
typical_cds_rare	Chr2	75393070	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	1	C17
lof_cds	Chr2	75393078	AGT	A	INDEL	2bp_deletion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	16	A25,B104,B125,B17,B24,B47,B56,B84,B96,C2,C25,C65,C7,C84,D10,D11
lof_cds	Chr2	75393082	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	4	A6,B118,C2,C38
typical_cds_rare	Chr2	75393082	T	TA	INDEL	1bp_insertion	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	4	A6,B118,C2,C38
lof_cds	Chr2	75393097	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	14	A6,B118,B125,B17,B24,B47,B56,B84,B96,C2,C38,C65,D10,D11
lof_cds	Chr2	75393098	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	4	B101,B57,B97,C47
typical_cds_rare	Chr2	75393098	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	4	B101,B57,B97,C47
lof_cds	Chr2	75393101	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	12	A6,B118,B125,B17,B47,B56,B84,B96,C2,C38,C65,D11
lof_cds	Chr2	75393114	ACC	A	INDEL	2bp_deletion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	8	B101,B50,B57,B97,C14,C17,C42,C47
lof_cds	Chr2	75393130	C	CGT	INDEL	2bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B57,B97,C16
typical_cds_rare	Chr2	75393130	C	CGT	INDEL	2bp_insertion	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B57,B97,C16
lof_cds	Chr2	75393132	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B57,B97,C16
typical_cds_rare	Chr2	75393132	TTC	T	INDEL	2bp_deletion	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B57,B97,C16
lof_cds	Chr2	75393133	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	11	B118,B125,B17,B47,B52,B56,B84,C2,C38,C65,D10
lof_cds	Chr2	75393136	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	11	B118,B125,B17,B47,B52,B56,B84,C2,C38,C65,D10
lof_cds	Chr2	75393150	A	ATG	INDEL	2bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	5	A14,B26,B94,C47,C77
typical_cds_rare	Chr2	75393150	A	ATG	INDEL	2bp_insertion	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	5	A14,B26,B94,C47,C77
lof_cds	Chr2	75393155	TAC	T	INDEL	2bp_deletion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	5	A14,B26,B94,C47,C77
typical_cds_rare	Chr2	75393155	TAC	T	INDEL	2bp_deletion	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	5	A14,B26,B94,C47,C77
typical_cds_rare	Chr2	75393167	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	2	B26,C47
typical_cds_rare	Chr2	75393211	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	C45,C58,C77
lof_cds	Chr2	75393224	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	22	B111,B118,B18,B30,B38,B39,B40,B57,B84,B95,B99,C12,C16,C26,C36,C45,C52,C53,C66,C67,C74,D2
lof_cds	Chr2	75393329	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	34	A16,A23,A4,A7,B1,B100,B110,B112,B120,B124,B131,B14,B19,B26,B32,B35,B4,B42,B43,B49,B55,B89,B90,B92,C12,C14,C19,C37,C50,C72,C8,C9,D4,D7
typical_cds_rare	Chr2	75393423	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	2	B104,D11
typical_cds_rare	Chr2	75393454	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B50,C14,C42
lof_cds	Chr2	75393470	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B50,C14,C42
typical_cds_rare	Chr2	75393470	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B50,C14,C42
lof_cds	Chr2	75393473	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	16	A8,B12,B138,B139,B21,B50,B53,B58,B73,B91,B95,C14,C27,C29,C40,C82
typical_cds_rare	Chr2	75393515	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B50,C14,C42
typical_cds_rare	Chr2	75393574	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	3	B111,B129,B31
typical_cds_rare	Chr2	75393575	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	4	B111,B129,B31,C39
typical_cds_rare	Chr2	75393585	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131009495	SmilChr02G005534	131009495	rna-XM_057936856.1,rna-XM_057936857.1	2	A10,B101