source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	1008690	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	2	C33,D3
typical_cds_rare	Chr3	1008724	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	2	B18,C15
lof_cds	Chr3	1008727	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	B9,C47,C48
typical_cds_rare	Chr3	1008727	G	GT	INDEL	1bp_insertion	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	B9,C47,C48
typical_cds_rare	Chr3	1008741	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	D10
lof_cds	Chr3	1008749	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B107
typical_cds_rare	Chr3	1008749	CT	C	INDEL	1bp_deletion	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B107
typical_cds_rare	Chr3	1008782	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	A8,C28,D10
lof_cds	Chr3	1008785	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	C28
typical_cds_rare	Chr3	1008785	GT	G	INDEL	1bp_deletion	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	C28
typical_cds_rare	Chr3	1008818	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B46
typical_cds_rare	Chr3	1008827	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	A13,B29,B87
typical_cds_rare	Chr3	1008875	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	2	B69,D11
lof_cds	Chr3	1008879	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	68	A13,A20,A21,A4,A6,B1,B105,B109,B112,B117,B124,B128,B134,B138,B139,B18,B20,B23,B26,B3,B32,B36,B40,B41,B43,B48,B52,B56,B6,B63,B64,B67,B68,B69,B74,B85,B88,B90,B92,C12,C13,C14,C19,C22,C3,C36,C39,C41,C44,C46,C47,C49,C50,C52,C56,C59,C61,C63,C65,C78,C79,C82,C86,C87,C9,D10,D6,D7
typical_cds_rare	Chr3	1008882	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	B118,D10,D11
lof_cds	Chr3	1008884	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	4	B57,B94,C13,D6
typical_cds_rare	Chr3	1008884	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	4	B57,B94,C13,D6
typical_cds_rare	Chr3	1008908	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	B122,C72,D11
typical_cds_rare	Chr3	1008986	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B132
typical_cds_rare	Chr3	1009005	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	2	B122,C72
typical_cds_rare	Chr3	1009010	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	2	B122,C72
lof_cds	Chr3	1009012	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B107
typical_cds_rare	Chr3	1009012	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B107
typical_cds_rare	Chr3	1009014	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B107
typical_cds_rare	Chr3	1009024	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B122
typical_cds_rare	Chr3	1009033	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B122
lof_cds	Chr3	1009034	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	C39
typical_cds_rare	Chr3	1009034	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	C39
typical_cds_rare	Chr3	1009040	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B107
typical_cds_rare	Chr3	1009041	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B122
typical_cds_rare	Chr3	1009086	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	B44,C39,C79
typical_cds_rare	Chr3	1009109	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	A20,B106,C63
lof_cds	Chr3	1009180	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	4	B106,C63,C64,D3
typical_cds_rare	Chr3	1009180	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	4	B106,C63,C64,D3
typical_cds_rare	Chr3	1009464	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	C64
lof_cds	Chr3	1009501	ACC	A	INDEL	2bp_deletion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B135
typical_cds_rare	Chr3	1009501	ACC	A	INDEL	2bp_deletion	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B135
typical_cds_rare	Chr3	1009502	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	4	B69,C33,C64,C66
typical_cds_rare	Chr3	1009508	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	4	B69,C33,C64,C66
typical_cds_rare	Chr3	1009559	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	2	B135,B2
lof_cds	Chr3	1009576	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	5	B121,B21,B44,B64,C53
typical_cds_rare	Chr3	1009576	ATT	A	INDEL	2bp_deletion	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	5	B121,B21,B44,B64,C53
typical_cds_rare	Chr3	1009582	GA	*	INDEL	1bp_deletion	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	4	A23,B26,C18,C26
lof_cds	Chr3	1009585	T	TCC	INDEL	2bp_insertion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	8	B121,B21,B3,B44,B64,B97,C53,C74
lof_cds	Chr3	1009591	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	12	A23,B121,B21,B26,B3,B44,B64,B97,C18,C26,C53,C74
lof_cds	Chr3	1009593	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	43	A10,A18,A21,A22,A6,A8,B104,B110,B120,B126,B128,B139,B19,B2,B25,B32,B47,B52,B6,B69,B74,B9,B91,B95,C19,C24,C33,C6,C61,C63,C64,C66,C69,C7,C70,C72,C84,C85,D10,D11,D6,D7,D8
lof_cds	Chr3	1009596	G	GCA	INDEL	2bp_insertion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	27	A21,A22,A8,B126,B128,B137,B139,B47,B52,B6,B69,B7,B95,C19,C24,C33,C6,C61,C63,C64,C66,C69,C7,C70,C85,D11,D7
lof_cds	Chr3	1009601	GTA	G	INDEL	2bp_deletion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	13	A23,B121,B21,B26,B3,B44,B64,B97,C18,C26,C53,C56,C74
lof_cds	Chr3	1009624	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	13	A23,B121,B21,B26,B3,B44,B64,B97,C18,C26,C53,C56,C74
lof_cds	Chr3	1009653	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	7	B3,B44,B97,C47,C56,C59,C74
lof_cds	Chr3	1009659	A	AGG	INDEL	2bp_insertion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	7	B3,B44,B97,C47,C56,C59,C74
typical_cds_rare	Chr3	1009701	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	5	A8,B135,B2,C63,C65
typical_cds_rare	Chr3	1009709	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	C62
typical_cds_rare	Chr3	1009736	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	A8,B135,B2
lof_cds	Chr3	1009808	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	17	B113,B119,B121,B3,B41,B43,B44,B5,B93,B97,C12,C18,C24,C26,C47,C53,C56
lof_cds	Chr3	1009825	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	7	B3,B41,B97,C18,C26,C47,C59
lof_cds	Chr3	1009827	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	7	B3,B41,B97,C18,C26,C47,C59
lof_cds	Chr3	1009840	A	ATC	INDEL	2bp_insertion	stop_gained,frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	12	B119,B121,B3,B41,B44,B97,C18,C26,C47,C53,C59,C74
lof_cds	Chr3	1009842	CCT	C	INDEL	2bp_deletion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	11	B121,B3,B41,B44,B97,C18,C26,C47,C53,C59,C74
typical_cds_rare	Chr3	1009850	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	C53
typical_cds_rare	Chr3	1009872	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	C53
lof_cds	Chr3	1009885	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	C53
typical_cds_rare	Chr3	1009885	G	GC	INDEL	1bp_insertion	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	C53
typical_cds_rare	Chr3	1012278	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B69
typical_cds_rare	Chr3	1012433	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	B49,C13,D6
typical_cds_rare	Chr3	1012463	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	A10,B118,B42
typical_cds_rare	Chr3	1012478	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	B85,C63,D5
typical_cds_rare	Chr3	1012493	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	D10
typical_cds_rare	Chr3	1012520	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	5	A8,B135,B2,C12,C65
lof_cds	Chr3	1012558	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	B52,C23,C29
typical_cds_rare	Chr3	1012558	G	GA	INDEL	1bp_insertion	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	B52,C23,C29
lof_cds	Chr3	1012561	AAC	A	INDEL	2bp_deletion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	B52,C23,C29
typical_cds_rare	Chr3	1012561	AAC	A	INDEL	2bp_deletion	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	B52,C23,C29
typical_cds_rare	Chr3	1012574	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	B52,C23,C29
typical_cds_rare	Chr3	1012611	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	5	A1,B119,B54,B62,B89
typical_cds_rare	Chr3	1012614	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	B34,B8,C33
lof_cds	Chr3	1012641	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	2	A1,B54
typical_cds_rare	Chr3	1012641	C	CA	INDEL	1bp_insertion	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	2	A1,B54
lof_cds	Chr3	1012644	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B54
typical_cds_rare	Chr3	1012644	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B54
typical_cds_rare	Chr3	1012677	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	D11
typical_cds_rare	Chr3	1012723	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	5	B81,C39,D11,D6,D7
typical_cds_rare	Chr3	1012740	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	B135,B2,C12
typical_cds_rare	Chr3	1012762	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	D3
lof_cds	Chr3	1012812	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B127
typical_cds_rare	Chr3	1012812	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B127
lof_cds	Chr3	1012814	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B127
typical_cds_rare	Chr3	1012814	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	1	B127
typical_cds_rare	Chr3	1012869	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	3	C22,C26,D5
typical_cds_rare	Chr3	1013028	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016848	SmilChr03G000088	131016848	rna-XM_057945623.1	5	B112,B136,B47,B91,B96