source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	1018898	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C65
typical_cds_rare	Chr3	1018978	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C13
typical_cds_rare	Chr3	1019019	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	3	B11,B127,C63
lof_cds	Chr3	1019029	TAG	T	INDEL	2bp_deletion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C48
typical_cds_rare	Chr3	1019029	TAG	T	INDEL	2bp_deletion	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C48
typical_cds_rare	Chr3	1019038	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C14
typical_cds_rare	Chr3	1019055	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	B123
typical_cds_rare	Chr3	1019075	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C55
typical_cds_rare	Chr3	1019152	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	5	A4,B114,B36,C48,C64
typical_cds_rare	Chr3	1019199	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	2	B114,C64
typical_cds_rare	Chr3	1019323	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	B49
typical_cds_rare	Chr3	1019388	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C72
typical_cds_rare	Chr3	1019425	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	3	B26,B4,C39
typical_cds_rare	Chr3	1019486	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	B138
typical_cds_rare	Chr3	1019525	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	3	B34,C56,C73
typical_cds_rare	Chr3	1019565	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	4	B102,B123,C16,C3
typical_cds_rare	Chr3	1019621	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C19
lof_cds	Chr3	1019637	CTA	C	INDEL	2bp_deletion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C19
typical_cds_rare	Chr3	1019637	CTA	C	INDEL	2bp_deletion	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C19
lof_cds	Chr3	1020394	AAC	A	INDEL	2bp_deletion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	45	A18,A5,B102,B103,B108,B109,B111,B112,B113,B115,B118,B131,B16,B18,B23,B30,B51,B53,B56,B62,B63,B70,B79,B85,B9,B90,B95,C10,C11,C16,C18,C20,C22,C24,C29,C30,C33,C43,C51,C58,C68,C69,C78,C80,C9
lof_cds	Chr3	1020398	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	3	B117,B55,B97
typical_cds_rare	Chr3	1020398	C	CG	INDEL	1bp_insertion	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	3	B117,B55,B97
lof_cds	Chr3	1020463	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	75	A1,A18,A5,B102,B103,B108,B109,B111,B112,B113,B115,B117,B118,B121,B127,B128,B13,B18,B23,B27,B30,B35,B36,B37,B43,B54,B55,B56,B62,B63,B66,B68,B70,B75,B79,B89,B90,B93,B95,B97,B98,C10,C11,C16,C17,C20,C24,C25,C27,C29,C3,C30,C33,C43,C49,C5,C51,C57,C58,C59,C62,C63,C68,C69,C7,C75,C76,C77,C78,C8,C80,C87,C9,D3,D8
lof_cds	Chr3	1020466	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	75	A1,A18,A5,B102,B103,B108,B109,B111,B113,B115,B117,B118,B121,B127,B128,B13,B18,B23,B27,B30,B35,B36,B37,B43,B54,B55,B56,B62,B63,B66,B68,B70,B75,B79,B85,B89,B90,B93,B95,B97,B98,C10,C11,C16,C17,C20,C24,C25,C27,C29,C3,C30,C33,C43,C49,C5,C51,C57,C58,C59,C62,C63,C68,C69,C7,C75,C76,C77,C78,C8,C80,C87,C9,D3,D8
typical_cds_rare	Chr3	1020528	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	2	B101,C62
typical_cds_rare	Chr3	1020565	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	2	C34,D11
lof_cds	Chr3	1020579	T	TCC	INDEL	2bp_insertion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	37	A11,B101,B107,B111,B112,B115,B117,B13,B131,B27,B30,B37,B43,B47,B54,B66,B68,B75,B76,B77,B86,B95,C11,C29,C33,C5,C51,C68,C69,C7,C76,C77,C8,C87,C9,D3,D8
lof_cds	Chr3	1020581	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	38	A11,B101,B107,B111,B112,B115,B117,B13,B131,B27,B30,B37,B43,B47,B54,B66,B68,B75,B76,B77,B86,B95,C11,C27,C29,C33,C5,C51,C68,C69,C7,C76,C77,C8,C87,C9,D3,D8
typical_cds_rare	Chr3	1020666	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	3	B109,C45,D11
typical_cds_rare	Chr3	1020887	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	4	B22,B5,B57,C46
typical_cds_rare	Chr3	1020891	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C63
lof_cds	Chr3	1021102	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	37	A14,A25,A3,A9,B1,B102,B107,B11,B113,B117,B132,B20,B3,B31,B41,B47,B6,B68,B69,B8,B90,B92,B96,B98,C10,C17,C27,C42,C43,C51,C56,C7,C70,C75,C79,C9,D11
typical_cds_rare	Chr3	1021134	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	2	B22,B5
typical_cds_rare	Chr3	1021219	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	5	B12,B4,B81,C9,D10
lof_cds	Chr3	1022366	TAG	T	INDEL	2bp_deletion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C48
typical_cds_rare	Chr3	1022366	TAG	T	INDEL	2bp_deletion	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C48
lof_cds	Chr3	1022454	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	4	B10,B85,C64,C87
typical_cds_rare	Chr3	1022454	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	4	B10,B85,C64,C87
typical_cds_rare	Chr3	1022550	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	5	A18,B117,B33,B35,B78
typical_cds_rare	Chr3	1023175	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C19
typical_cds_rare	Chr3	1023211	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C19
typical_cds_rare	Chr3	1023220	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C19
typical_cds_rare	Chr3	1023267	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	B81
typical_cds_rare	Chr3	1023417	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	2	C25,C7
lof_cds	Chr3	1023432	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	B54
typical_cds_rare	Chr3	1023432	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	B54
typical_cds_rare	Chr3	1023460	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	3	A3,C69,C86
typical_cds_rare	Chr3	1023493	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	4	A3,C69,C86,D7
typical_cds_rare	Chr3	1023504	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C80
lof_cds	Chr3	1023516	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C80
typical_cds_rare	Chr3	1023516	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C80
lof_cds	Chr3	1023531	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	B75
typical_cds_rare	Chr3	1023531	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	B75
typical_cds_rare	Chr3	1023615	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	B1
typical_cds_rare	Chr3	1023637	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	5	B39,B83,B86,C1,C35
typical_cds_rare	Chr3	1023700	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	4	A20,C24,C78,C85
lof_cds	Chr3	1023701	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	30	A21,A8,B101,B105,B114,B134,B41,B45,B46,B48,B65,B67,B7,B70,B72,B76,B86,C10,C16,C25,C26,C35,C42,C63,C67,C68,C74,C87,D11,D9
lof_cds	Chr3	1023704	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	4	A10,A8,B61,C42
typical_cds_rare	Chr3	1023704	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	4	A10,A8,B61,C42
typical_cds_rare	Chr3	1023744	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	5	B103,B124,B79,C62,C8
typical_cds_rare	Chr3	1023764	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	2	B114,C84
typical_cds_rare	Chr3	1023834	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	4	B132,B89,B90,B92
lof_cds	Chr3	1023843	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	20	A9,B128,B133,B137,B139,B25,B3,B56,B63,B71,B93,B94,B95,B98,C12,C19,C41,C53,C70,C79
lof_cds	Chr3	1023845	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	9	A11,B112,B32,B46,B51,B75,B90,C49,C65
lof_cds	Chr3	1023849	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	67	A20,A3,A8,B104,B105,B106,B11,B110,B114,B115,B125,B127,B136,B14,B15,B17,B18,B2,B22,B26,B3,B34,B38,B41,B45,B47,B49,B54,B59,B61,B63,B69,B71,B73,B74,B85,B98,C13,C16,C18,C19,C23,C24,C26,C28,C29,C30,C33,C37,C4,C42,C43,C53,C54,C59,C6,C61,C69,C72,C73,C74,C76,C84,C86,C87,D3,D4
typical_cds_rare	Chr3	1023863	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	3	B122,B30,C47
lof_cds	Chr3	1023908	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C8
typical_cds_rare	Chr3	1023908	CT	C	INDEL	1bp_deletion	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	1	C8
lof_cds	Chr3	1023930	A	AAT	INDEL	2bp_insertion	frameshift_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	3	B131,B28,C62
typical_cds_rare	Chr3	1023930	A	AAT	INDEL	2bp_insertion	CDS_variant	LOC131016790	SmilChr03G000090	131016790	rna-XM_057945520.1	3	B131,B28,C62