source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	1172518	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	1	B2
typical_cds_rare	Chr3	1172522	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	5	A9,B104,B20,C18,C2
typical_cds_rare	Chr3	1172524	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	5	A24,A9,C19,C61,C65
typical_cds_rare	Chr3	1172535	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	4	B72,B86,C26,C35
lof_cds	Chr3	1172673	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	12	B127,B56,B57,B64,B72,B91,C14,C24,C63,C68,C87,D5
lof_cds	Chr3	1172675	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	11	B127,B56,B57,B64,B72,B91,C14,C24,C68,C87,D5
typical_cds_rare	Chr3	1172683	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	2	B104,B112
typical_cds_rare	Chr3	1172703	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	1	B11
typical_cds_rare	Chr3	1172868	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	3	C28,C59,C68
lof_cds	Chr3	1172894	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	2	B3,C41
typical_cds_rare	Chr3	1172894	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	2	B3,C41
typical_cds_rare	Chr3	1172993	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	5	B30,B72,C35,C42,D2
typical_cds_rare	Chr3	1173002	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	1	B53
typical_cds_rare	Chr3	1173034	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	5	B74,C18,C33,C49,C72
lof_cds	Chr3	1173067	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	2	B128,C79
typical_cds_rare	Chr3	1173067	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	2	B128,C79
lof_cds	Chr3	1173070	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	2	B117,B78
typical_cds_rare	Chr3	1173070	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	2	B117,B78
typical_cds_rare	Chr3	1173108	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	1	A5
typical_cds_rare	Chr3	1173127	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	4	B51,B81,B93,C38
typical_cds_rare	Chr3	1173128	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	4	B34,C13,C48,C80
typical_cds_rare	Chr3	1173159	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	4	B44,C38,C71,C72
typical_cds_rare	Chr3	1173162	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	1	C33
typical_cds_rare	Chr3	1173169	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	2	A24,B46
typical_cds_rare	Chr3	1173172	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	3	B12,B53,D7
typical_cds_rare	Chr3	1173176	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	2	B117,B33
typical_cds_rare	Chr3	1173178	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	2	B117,B33
lof_cds	Chr3	1173213	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	5	B131,B31,B59,C26,C35
typical_cds_rare	Chr3	1173213	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	5	B131,B31,B59,C26,C35
typical_cds_rare	Chr3	1173242	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	5	B124,B135,B2,B89,C32
lof_cds	Chr3	1173278	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	2	B27,C35
typical_cds_rare	Chr3	1173278	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	2	B27,C35
typical_cds_rare	Chr3	1173285	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	2	C17,C5
typical_cds_rare	Chr3	1173305	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	4	B106,C17,C5,C86
typical_cds_rare	Chr3	1173345	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	2	A14,C41
lof_cds	Chr3	1173352	ACT	A	INDEL	2bp_deletion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	1	B98
typical_cds_rare	Chr3	1173352	ACT	A	INDEL	2bp_deletion	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	1	B98
typical_cds_rare	Chr3	1173367	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	2	C38,C56
lof_cds	Chr3	1173391	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	7	A7,B102,B111,B122,B48,C8,D8
typical_cds_rare	Chr3	1173392	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	2	B105,C31
typical_cds_rare	Chr3	1173400	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	4	B102,B48,C65,C8
typical_cds_rare	Chr3	1173406	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	4	B119,B28,B32,C85
lof_cds	Chr3	1173415	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	4	B101,C56,C65,C67
typical_cds_rare	Chr3	1173415	G	GT	INDEL	1bp_insertion	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	4	B101,C56,C65,C67
typical_cds_rare	Chr3	1173490	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	1	B39
lof_cds	Chr3	1173511	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	13	A21,B120,B131,B137,B16,B29,B56,B58,C40,C50,C65,C74,D10
lof_cds	Chr3	1173525	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	8	B110,B115,B131,B83,B95,C32,C59,C60
typical_cds_rare	Chr3	1173539	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	2	A22,C27
typical_cds_rare	Chr3	1173570	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	1	A14
typical_cds_rare	Chr3	1173582	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	5	B14,B24,B26,B8,C12
typical_cds_rare	Chr3	1173616	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945661.1	1	A5
typical_cds_rare	Chr3	1173998	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	3	B82,C8,D7
typical_cds_rare	Chr3	1173999	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	C22
typical_cds_rare	Chr3	1174075	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	B104
typical_cds_rare	Chr3	1174098	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	2	A14,C41
typical_cds_rare	Chr3	1174124	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	2	C33,D3
lof_cds	Chr3	1174125	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	3	B33,B35,B78
typical_cds_rare	Chr3	1174125	A	AG	INDEL	1bp_insertion	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	3	B33,B35,B78
lof_cds	Chr3	1174230	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	C71
typical_cds_rare	Chr3	1174230	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	C71
typical_cds_rare	Chr3	1174241	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	A18
typical_cds_rare	Chr3	1174263	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	5	B122,B38,B49,B5,C71
typical_cds_rare	Chr3	1174304	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	5	B2,B32,B64,C14,C49
typical_cds_rare	Chr3	1174314	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	5	A21,B26,B94,C85,D4
typical_cds_rare	Chr3	1174403	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	C47
typical_cds_rare	Chr3	1174407	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	4	B24,B86,B99,C58
typical_cds_rare	Chr3	1174425	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	B22
lof_cds	Chr3	1174426	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	9	B104,B138,B26,B53,B78,C47,C57,C85,C87
typical_cds_rare	Chr3	1174454	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	B126
lof_cds	Chr3	1174459	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	C75
typical_cds_rare	Chr3	1174459	A	AC	INDEL	1bp_insertion	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	C75
typical_cds_rare	Chr3	1174460	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	B68
lof_cds	Chr3	1174469	A	AAT	INDEL	2bp_insertion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	C75
typical_cds_rare	Chr3	1174469	A	AAT	INDEL	2bp_insertion	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	C75
typical_cds_rare	Chr3	1174488	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	5	B102,B18,B84,C16,C3
typical_cds_rare	Chr3	1174565	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	3	B22,B6,B76
lof_cds	Chr3	1174595	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	4	B101,C27,C78,C87
typical_cds_rare	Chr3	1174595	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	4	B101,C27,C78,C87
typical_cds_rare	Chr3	1174604	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	3	B101,C78,C87
typical_cds_rare	Chr3	1174621	GT	*	INDEL	1bp_deletion	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	2	B28,C62
lof_cds	Chr3	1174650	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	28	A18,B103,B104,B107,B119,B120,B122,B13,B130,B132,B138,B26,B32,B33,B41,B5,B53,B64,B73,B78,B98,C24,C47,C49,C57,C77,C85,C87
typical_cds_rare	Chr3	1174671	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	3	B22,B6,B76
typical_cds_rare	Chr3	1174692	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	4	B22,B6,B65,B76
typical_cds_rare	Chr3	1174712	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	5	B107,B122,B30,B81,C47
lof_cds	Chr3	1174766	AAG	A	INDEL	2bp_deletion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	10	A11,A13,A19,A6,B112,B46,B85,C22,C61,C63
lof_cds	Chr3	1174816	CTT	C	INDEL	2bp_deletion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	58	A11,A13,A15,A18,A6,A9,B100,B102,B103,B105,B112,B114,B119,B120,B123,B124,B137,B16,B29,B3,B31,B33,B36,B4,B46,B67,B70,B77,B78,B83,B85,B87,B90,B96,C14,C15,C16,C18,C20,C22,C27,C30,C35,C4,C42,C45,C46,C5,C52,C55,C6,C61,C63,C71,C76,C9,D10,D8
lof_cds	Chr3	1174900	G	GAA	INDEL	2bp_insertion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	2	B52,C10
typical_cds_rare	Chr3	1174900	G	GAA	INDEL	2bp_insertion	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	2	B52,C10
lof_cds	Chr3	1174902	CGG	C	INDEL	2bp_deletion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	2	B52,C10
typical_cds_rare	Chr3	1174902	CGG	C	INDEL	2bp_deletion	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	2	B52,C10
typical_cds_rare	Chr3	1174971	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	C32
lof_cds	Chr3	1174990	G	GCC	INDEL	2bp_insertion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	10	A2,B2,B7,B93,C2,C29,C32,C53,C68,D7
typical_cds_rare	Chr3	1175022	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	5	B111,B134,B66,B89,B99
lof_cds	Chr3	1175038	TAC	T	INDEL	2bp_deletion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	13	B106,B107,B120,B122,B33,B41,B64,B98,C74,C77,C81,C87,D3
lof_cds	Chr3	1175043	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	3	B106,C74,C81
typical_cds_rare	Chr3	1175043	A	ACC	INDEL	2bp_insertion	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	3	B106,C74,C81
lof_cds	Chr3	1175044	G	GCA	INDEL	2bp_insertion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	9	B107,B120,B122,B33,B41,B64,B98,C77,C87
typical_cds_rare	Chr3	1175057	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	3	B22,B6,B76
typical_cds_rare	Chr3	1175058	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	3	B18,C35,C42
typical_cds_rare	Chr3	1175062	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	5	B103,B115,B71,B81,C57
typical_cds_rare	Chr3	1175073	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	D9
typical_cds_rare	Chr3	1175081	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	4	B19,B57,B91,C26
typical_cds_rare	Chr3	1175085	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	4	B60,C48,D10,D2
typical_cds_rare	Chr3	1175095	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	2	A24,D7
typical_cds_rare	Chr3	1175103	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	C44
typical_cds_rare	Chr3	1175125	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	3	C17,C30,C45
typical_cds_rare	Chr3	1175191	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	4	B11,B127,B92,D3
lof_cds	Chr3	1175230	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	C84
typical_cds_rare	Chr3	1175230	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	1	C84
typical_cds_rare	Chr3	1175253	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	2	B131,B42
typical_cds_rare	Chr3	1175263	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016879	SmilChr03G000105	131016879	rna-XM_057945660.1	4	A13,B113,C39,C59