source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	1188278	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	4	B5,B66,C18,D5
typical_cds_rare	Chr3	1188278	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	4	B5,B66,C18,D5
typical_cds_rare	Chr3	1188297	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	2	C1,C46
lof_cds	Chr3	1188306	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	7	A2,B120,B41,B71,C10,C74,D1
typical_cds_rare	Chr3	1188322	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	C49
typical_cds_rare	Chr3	1188359	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B59
typical_cds_rare	Chr3	1188391	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	D11
lof_cds	Chr3	1188399	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	20	B133,B23,B3,B34,B38,B39,B86,B87,B94,B95,C1,C11,C12,C13,C48,C65,C69,C80,C85,D6
lof_cds	Chr3	1188407	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	5	B3,B86,B95,B96,C12
typical_cds_rare	Chr3	1188407	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	5	B3,B86,B95,B96,C12
typical_cds_rare	Chr3	1188435	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B47
typical_cds_rare	Chr3	1188463	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	3	B84,C16,C38
lof_cds	Chr3	1188486	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	75	A1,A11,A14,A20,A22,A3,A8,A9,B1,B100,B102,B108,B109,B114,B12,B123,B124,B125,B126,B127,B129,B131,B136,B18,B2,B24,B25,B30,B31,B36,B37,B47,B51,B54,B61,B65,B66,B67,B7,B73,B76,B8,B80,B88,B91,B92,B94,C10,C14,C18,C20,C21,C23,C25,C26,C27,C28,C32,C38,C40,C42,C49,C52,C53,C54,C55,C58,C6,C60,C67,C83,D11,D2,D3,D4
lof_cds	Chr3	1188490	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	72	A11,A14,A20,A22,A3,A8,A9,B1,B100,B102,B108,B109,B114,B12,B123,B124,B125,B126,B127,B129,B131,B136,B18,B2,B24,B25,B30,B31,B36,B37,B51,B54,B61,B65,B66,B67,B7,B73,B76,B8,B80,B88,B91,B92,B94,C10,C18,C20,C21,C23,C25,C26,C27,C28,C3,C32,C38,C40,C42,C49,C52,C54,C55,C58,C6,C60,C67,C83,D11,D2,D3,D4
typical_cds_rare	Chr3	1188497	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	5	A10,B101,B48,B85,C41
lof_cds	Chr3	1188530	A	AGC	INDEL	2bp_insertion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	C72
typical_cds_rare	Chr3	1188530	A	AGC	INDEL	2bp_insertion	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	C72
typical_cds_rare	Chr3	1188532	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	3	A4,B47,C63
typical_cds_rare	Chr3	1188533	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	3	B97,C74,D2
typical_cds_rare	Chr3	1188540	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	4	A4,B47,C60,C63
typical_cds_rare	Chr3	1188579	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	3	A6,B55,C31
typical_cds_rare	Chr3	1188587	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B31
typical_cds_rare	Chr3	1188599	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	4	B118,B134,B57,C19
lof_cds	Chr3	1188615	C	CAA	INDEL	2bp_insertion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B47
typical_cds_rare	Chr3	1188615	C	CAA	INDEL	2bp_insertion	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B47
lof_cds	Chr3	1188620	TGC	T	INDEL	2bp_deletion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	2	B47,C63
typical_cds_rare	Chr3	1188620	TGC	T	INDEL	2bp_deletion	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	2	B47,C63
typical_cds_rare	Chr3	1188668	CG	*	INDEL	1bp_deletion	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	5	B51,C19,C25,C28,C58
lof_cds	Chr3	1188672	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	C58
typical_cds_rare	Chr3	1188672	A	AG	INDEL	1bp_insertion	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	C58
lof_cds	Chr3	1188678	GAA	G	INDEL	2bp_deletion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	2	C25,C58
typical_cds_rare	Chr3	1188678	GAA	G	INDEL	2bp_deletion	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	2	C25,C58
typical_cds_rare	Chr3	1188691	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	5	B131,B35,B55,B59,C9
typical_cds_rare	Chr3	1188706	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	2	B69,C13
typical_cds_rare	Chr3	1188723	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	2	B35,B55
lof_cds	Chr3	1188745	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	6	A14,B16,B22,B58,C33,C4
lof_cds	Chr3	1188748	TGC	T	INDEL	2bp_deletion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	6	A14,B16,B22,B58,C33,C4
typical_cds_rare	Chr3	1188804	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	3	B85,C63,C64
lof_cds	Chr3	1188843	TAA	T	INDEL	2bp_deletion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	3	B12,B79,B83
typical_cds_rare	Chr3	1188843	TAA	T	INDEL	2bp_deletion	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	3	B12,B79,B83
typical_cds_rare	Chr3	1188861	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	C31
typical_cds_rare	Chr3	1188871	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	C59
typical_cds_rare	Chr3	1188938	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	5	B38,C1,C13,C80,D6
typical_cds_rare	Chr3	1189012	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	3	B97,C74,D2
lof_cds	Chr3	1189014	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	19	A18,A21,B112,B38,B39,B40,B46,B49,B55,B82,B97,C14,C61,C7,C77,C8,C87,C9,D1
lof_cds	Chr3	1189018	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	A11
typical_cds_rare	Chr3	1189018	T	TGA	INDEL	2bp_insertion	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	A11
typical_cds_rare	Chr3	1189045	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	D8
typical_cds_rare	Chr3	1189064	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	2	C51,C69
typical_cds_rare	Chr3	1189098	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	2	B85,D1
typical_cds_rare	Chr3	1189125	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B104
typical_cds_rare	Chr3	1189186	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B104
typical_cds_rare	Chr3	1189215	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	C8
typical_cds_rare	Chr3	1189217	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B104
typical_cds_rare	Chr3	1189249	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	4	B111,B83,C59,C74
typical_cds_rare	Chr3	1189250	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	4	B111,B83,C59,C74
typical_cds_rare	Chr3	1189313	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	C58
typical_cds_rare	Chr3	1189333	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	5	B102,B108,B117,B3,C81
typical_cds_rare	Chr3	1189357	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	2	B102,B108
lof_cds	Chr3	1189411	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	3	B30,B67,C59
typical_cds_rare	Chr3	1189411	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	3	B30,B67,C59
typical_cds_rare	Chr3	1189414	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B104
typical_cds_rare	Chr3	1189416	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	5	B49,B82,B97,C77,C9
typical_cds_rare	Chr3	1189454	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	D10
lof_cds	Chr3	1189455	C	CAA	INDEL	2bp_insertion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B19
typical_cds_rare	Chr3	1189455	C	CAA	INDEL	2bp_insertion	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B19
typical_cds_rare	Chr3	1189469	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	D11
typical_cds_rare	Chr3	1189480	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B94
typical_cds_rare	Chr3	1189490	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	2	B4,D7
lof_cds	Chr3	1189499	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	8	A19,A4,B112,B119,B18,B83,B97,C59
typical_cds_rare	Chr3	1189512	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	3	B52,C10,C23
typical_cds_rare	Chr3	1189514	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	4	B11,B135,B78,C47
lof_cds	Chr3	1189532	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B67
typical_cds_rare	Chr3	1189532	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B67
typical_cds_rare	Chr3	1189558	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	3	B43,B78,C47
typical_cds_rare	Chr3	1189580	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	2	B139,C87
typical_cds_rare	Chr3	1189605	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	5	B109,B132,B133,B71,D9
typical_cds_rare	Chr3	1189699	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	5	B136,B2,B64,B94,C49
typical_cds_rare	Chr3	1189745	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	2	B35,C9
typical_cds_rare	Chr3	1189754	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	2	C33,D3
typical_cds_rare	Chr3	1189772	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	2	B24,B54
typical_cds_rare	Chr3	1189825	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B19
typical_cds_rare	Chr3	1189840	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	2	A9,C58
typical_cds_rare	Chr3	1189844	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B65
typical_cds_rare	Chr3	1189941	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B115
typical_cds_rare	Chr3	1190047	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B34
typical_cds_rare	Chr3	1190186	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	C72
lof_cds	Chr3	1190299	T	TGG	INDEL	2bp_insertion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B41
typical_cds_rare	Chr3	1190299	T	TGG	INDEL	2bp_insertion	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B41
lof_cds	Chr3	1190313	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B41
typical_cds_rare	Chr3	1190313	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131015744	SmilChr03G000107	131015744	rna-XM_057944166.1	1	B41